mRNA_C-linearis_contig95.16986.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: D8LLI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI1_ECTSI) HSP 1 Score: 442 bits (1136), Expect = 7.390e-152 Identity = 239/303 (78.88%), Postives = 252/303 (83.17%), Query Frame = 1 Query: 1 MKTAVAVAACWVVGVQAFVQGGMAXXXXXXXXXXXXXXXXXXXXXXXXXRMSLLEGE---PAAFSRSEALGRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
MKTAVAVAACW G+ AF+ G+ RM + + E +A SRSEAL GAA LGAVVVG GVPAPASAGSVAEANKRLS++NLPPVVDVPGGFNTLLEGYG DGALKNSLGSSNR PILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSL+GGSSLSSK+ MEGV+KKALSQKG+NQFQSFKLKSVKDG TDFNGNKYYIADFQYELLTGAGFTVERKGVASV Q+GNSV AVVGATTANRAKTVKPQLQEIA SFRVYEGKFD
Sbjct: 1 MKTAVAVAACWAGGINAFITPGVPVVPVSARQASSSSGRVAATT-----RMGVSDREGLASSACSRSEALSTFGAAVLGAVVVGTGVPAPASAGSVAEANKRLSEYNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLIGGSSLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETDFNGNKYYIADFQYELLTGAGFTVERKGVASVTQIGNSVNAVVGATTANRAKTVKPQLQEIARSFRVYEGKFD 298
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A835Z8Y2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y2_9STRA) HSP 1 Score: 207 bits (528), Expect = 2.600e-60 Identity = 120/242 (49.59%), Postives = 154/242 (63.64%), Query Frame = 1 Query: 172 PAAFSRSEALGRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSS--KEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEG 891
P SR +A+ AA AV++ P PASA + N RL+ + LP V P G LLE YG D NR +LVTWNYP GWI QRP+ DTN E GTV+TGDY +GDSA L V P ++GG LS+ K ++E +V ++++QKG NQ Q+FKLK V +GAT G +Y +F+Y+LLTGAGF VER G S+ QVG V +V+ TTA R K ++P+LQEIATSFRVY+G
Sbjct: 50 PQQVSRRQAMVAASAAIAAAVLMQE--PQPASALGLKAVNARLADYGLPGVGKPPDGMKALLEIYGRD---------QNRETLLVTWNYPNGWITQRPSLDTNSEDGTVATGDYQKGDSAFLVVQPLDVLGGEKLSATNKALVEKLVLQSITQKGANQIQNFKLKKVTEGATGAKGQQYINVEFKYDLLTGAGFIVERVGYGSLTQVGKGVQSVMAVTTAARLKKLQPKLQEIATSFRVYDG 280
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A4D9DCV0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCV0_9STRA) HSP 1 Score: 172 bits (437), Expect = 1.040e-47 Identity = 100/224 (44.64%), Postives = 135/224 (60.27%), Query Frame = 1 Query: 226 GAVVVG--AGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEG 891
G ++VG AGV PA A +++ N L+ + LPP++DVPGGF+ L+E YG K R +LV + YP W+V +P+ D N E GT+S GDY +GDSA +V G S + VV +A+ QK N +Q+FK+ + GA NG +Y I +F+YELLTGAGFTV+RKGVASV QVG +V + ATTA R K + +A SFRVY+G
Sbjct: 4 GPLLVGGKAGVVQPAQAAGLSKVNGELASYGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVTRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 222
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: W7TXP4_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXP4_9STRA) HSP 1 Score: 175 bits (443), Expect = 1.790e-47 Identity = 101/224 (45.09%), Postives = 136/224 (60.71%), Query Frame = 1 Query: 226 GAVVVG--AGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEG 891
G ++VG AGV PA A +++ N L+ + LPP++DVPGGF+ L+E YG K R +LV + YP W+V +P+ D N E GT+S GDY +GDSA +V G S + VVK+A+ QK N +Q+FK+ + GA NG +Y I +F+YELLTGAGFTV+RKGVASV QVG +V + ATTA R K + +A SFRVY+G
Sbjct: 95 GPLLVGGKAGVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKKE-----RETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 313
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7S2V7M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7M0_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.820e-45 Identity = 100/242 (41.32%), Postives = 147/242 (60.74%), Query Frame = 1 Query: 184 SRSEAL---GRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVV-DVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSS-KEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGK 894
SR EA+ G+ A + A V+G+ P A A S+ EAN L+ + + P +VP GF+ L+E +G DG R P L+++ YP W++Q+P+ TN E+GT + G+Y +GDSA ++V P + G ++ K+ + +V L+QKG+NQ+Q+FK + GAT G KYY+ DF+YELLTGAGF ++R+GVA+V +V A+V ATT R K + L IA SFR Y+GK
Sbjct: 58 SRREAIINAGQAAGAIMIAGVLGSS-PQSAEAKSIKEANNELTNYGVSPFEGNVPQGFSPLVEVWGKDGI---------RPPYLISFLYPALWVIQKPSMTTNGESGTYAAGNYQKGDSAAVYVGPSEVDGNDVMAKGKDYISSIVLGGLTQKGENQYQNFKTTKIVAGATGLKGQKYYVVDFKYELLTGAGFYIDRRGVAAVTGTPKNVQAIVCATTDTRYKKLADDLHVIADSFRAYDGK 289
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: F0YP05_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP05_AURAN) HSP 1 Score: 164 bits (416), Expect = 2.690e-44 Identity = 100/249 (40.16%), Postives = 152/249 (61.04%), Query Frame = 1 Query: 154 SLLEGEPAAFSRSEALGRIGAAFLGAVVVGAGV----PAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYE 888
SL + A + ++ R GA GA +V AG+ PAPA A +A+ N++L + LPPV +P GF+ +L D +L +V +N+P W+V +P+ +TN E+GTVS GDYG+GDSA L+V+ G + +K + +G L+QKGDNQFQ+F++++V G+ + + DF+YELLTGAGFTVER+GVA+V+ V A++ TT+ R K ++P+L++I SFRVY+
Sbjct: 13 SLAPTQSRAPAPGPSVARRGALAGGASLVAAGLVSLAPAPALAYDLAKYNRKLDKLGLPPVAGIPDGFSPVLSSVNQDQSL------------IVQFNHPNAWLVVKPSVNTNGESGTVSAGDYGKGDSAALYVSDLPPGGDKAFYAKLIAKG-----LAQKGDNQFQNFRVRAVSPGSPNA------VVDFEYELLTGAGFTVERRGVAAVSGVAGKSQALLAVTTSARYKKLEPELRKIVDSFRVYD 238
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A6U3V0C4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V0C4_9STRA) HSP 1 Score: 159 bits (403), Expect = 4.250e-42 Identity = 89/225 (39.56%), Postives = 132/225 (58.67%), Query Frame = 1 Query: 214 AAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKS-LMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVY 885
A +G+ + PA A G + N +L+ + LPP+ +VP GF+ L+E YG NR P+LV++ +P WIV P+ D N E GT+ G+Y +GD+A ++ P S + S K+ + + +A+SQKGD+ +Q FK+ V+ D+N +Y I DF+Y LLTGAGF V+R+GVASV GN+V + A+T R K ++ L+ IA SFRVY
Sbjct: 45 AGVVGSTFLQTAEPANAFGGGLKTCNAKLASYGLPPIANVPSGFSPLVEVYGK---------GRNRTPLLVSFVHPLDWIVTLPSQDVNGEDGTIQAGEYAKGDTATFYILPDSGKVDNISEQPKDFFKNAISRAISQKGDSIYQDFKITKVEPVKGDYNNQQYVICDFKYTLLTGAGFEVDRQGVASVTSEGNAVEVLWTASTRQRYKKLEEGLRSIAGSFRVY 260
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7S4MBN6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBN6_9STRA) HSP 1 Score: 155 bits (392), Expect = 2.250e-40 Identity = 92/238 (38.66%), Postives = 137/238 (57.56%), Query Frame = 1 Query: 190 SEALGRIGAAFLGAVVVGAGVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPK-SLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
S A GAA + + G PA A G + + N +L+ LP + +P GF+ L E +G +NR P+LV + +P W+V P+ D N E GT+ G+YG+GD++ FV + + + K E V++KA+SQK N +Q+FK+K+++ ++ Y I DFQY+L+TGAGF V+RK VASV GN+V A+ A+TA R K ++P L++IA SFRVY D
Sbjct: 49 SNAAAVAGAAMTSSFLQGPTEPALALGGGIKKVNAKLASLGLPEMKKLPDGFSPLCELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTIQAGEYGKGDTSTFFVYEEPGNVADIASQPKSFFEDVLQKAISQKSANIYQNFKVKNIQPTKGEYKDQTYVIVDFQYQLVTGAGFEVDRKAVASVTSQGNAVEALWCASTAIRYKKMEPALRDIAGSFRVYSDGLD 277
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7R9WJF7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJF7_9STRA) HSP 1 Score: 155 bits (391), Expect = 3.150e-40 Identity = 99/251 (39.44%), Postives = 142/251 (56.57%), Query Frame = 1 Query: 160 LEGEPAAFSRSEALGRIGAAFLGAVVVGA---GVPAPASAGSVAEANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFV-APKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSVKDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
L E SR G +GAA GAV + G APA A +++ N +L LP + VP GF+ LLE +G +NR P+LV + +P W+V P+ D N E GTV G+YG+GD+A FV + + + K E V++KA+SQK N +Q+FK+ +++ + Y I DF+Y+L+TGAGF V+RK VASV G +V A+ A+TA R K ++P L++IA+SFRVY D
Sbjct: 37 LYNEVPTASRRRFFGTVGAA-AGAVATSSLLQGPVAPAHAAKLSKVNAKLEALGLPAMGKVPDGFSPLLELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTVQAGEYGKGDTATFFVYEDEGNVADIASQPKSFFENVLQKAISQKSANIYQNFKVTNIQPTKGGYQDQTYMIVDFKYQLVTGAGFEVDRKAVASVTSQGKAVEALWCASTAVRYKKLEPALRDIASSFRVYSDGLD 277
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Match: A0A7R9ZTM7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTM7_9STRA) HSP 1 Score: 153 bits (387), Expect = 1.470e-39 Identity = 97/247 (39.27%), Postives = 137/247 (55.47%), Query Frame = 1 Query: 178 AFSRSEALGRIGAAFLGAVVVGAGV--PAPASAGSVAE-ANKRLSQFNLPPVVDVPGGFNTLLEGYGMDGALKNSLGSSNRAPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFV-APKSLMGGSSLSSKEVMEGVVKKALSQKGDNQFQSFKLKSV--KDGATDFNGNKYYIADFQYELLTGAGFTVERKGVASVAQVGNSVTAVVGATTANRAKTVKPQLQEIATSFRVYEGKFD 900
A SR + L A + A + GV P PA+A S A+ N +L F LPP+ V G LLE YG NR P+LV N+P W+VQ P+ D N E GT+ G+Y +GD+A ++ + + + K + E + A+SQKG N +Q+FK+ V + G D+NG Y + DF+YELLTGAGF V+R+GVAS+ G +V + A+T R K +PQL++I SFRV+ D
Sbjct: 42 AESRRKFLSNSFATYSAAALASTGVLAPLPANAASAADKVNAKLRAFGLPPINKVANGMKPLLEVYGK---------GKNRFPLLVLMNHPLTWVVQLPSNDVNGEDGTIQAGEYAKGDTATFYLYQEEGHVNDIGNAPKSLFEKALIGAISQKGANVYQNFKVTKVNPQTGNPDYNGKDYVLCDFKYELLTGAGFEVDRRGVASITSDGAAVEVLWAASTRERFKKTEPQLRDIVESFRVFGDGID 279 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16986.1 >prot_C-linearis_contig95.16986.1 ID=prot_C-linearis_contig95.16986.1|Name=mRNA_C-linearis_contig95.16986.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=301bp MKTAVAVAACWVVGVQAFVQGGMAAAAAAAAATTTSAAAAAAAATTTTTRback to top mRNA from alignment at C-linearis_contig95:354806..360718- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16986.1 ID=mRNA_C-linearis_contig95.16986.1|Name=mRNA_C-linearis_contig95.16986.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5913bp|location=Sequence derived from alignment at C-linearis_contig95:354806..360718- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:354806..360718- >mRNA_C-linearis_contig95.16986.1 ID=mRNA_C-linearis_contig95.16986.1|Name=mRNA_C-linearis_contig95.16986.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at C-linearis_contig95:354806..360718- (Chordaria linearis ClinC8C monoicous)back to top |