mRNA_C-linearis_contig95.16984.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Match: D7FRC9_ECTSI (Heat shock protein 70-putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC9_ECTSI) HSP 1 Score: 251 bits (640), Expect = 1.070e-69 Identity = 148/312 (47.44%), Postives = 188/312 (60.26%), Query Frame = 2 Query: 1304 SVAPDDAGVFLLESFQKDGMYRVLRNWEEGNIGLRRVEDSCRVVLSEMVKALDVNEPATAMDTARTETSRGHEGGFDGGPNAMESAALILSRLGRVRLPRIAEAVSAKLNLEELQGLTSVVMVGGFAGSVHVQEVVEKRVEDKYPDKSVKMVTPEKNPDLAIVQGAARYVGSLGSGLKHPTSAPQFTAVNCDLSYGILASEPGSWHAAVFDAYLLKGKGYPHGHT----------------------------------------IT-----PVPGQRWGMCC-RRGSSAVKQGEKSAKDAETPVVVEFTVM 2101
SVAP AG F LESF++DGMY+VL+NWEE +GL + CR+ +SEMV+AL V++PA AMDTAR +T+ G + G + +L+R R + RIA AVS KL EEL+GL SVVMVGGFAGS+HVQ V K V ++YP+KSV++V +PDLA+VQGAA YVG LG K+PTSAP+ + C SYGIL S G+W A F+A LLKG+ YP+GHT IT PVPG W MCC RR +SAV+Q E K+ ETP+ VEFT++
Sbjct: 157 SVAPR-AGHFQLESFERDGMYKVLQNWEEAKVGLSVDKPECRIDMSEMVEALGVSQPAMAMDTARKKTNNGGQDLVGGSGTELVLKPALLTRFFRTQCDRIAGAVSEKLKTEELRGLKSVVMVGGFAGSMHVQAAVRKSVLEEYPNKSVQVVVAT-SPDLAVVQGAALYVGPLGPRPKYPTSAPEMNGITCGSSYGILTSGRGTWDAKFFEAVLLKGEAYPNGHTKDFDYTVGSDCKLAFGSCGASEVKEGRNRLDSIGGIGAVHITVSETIPVPGG-WDMCCCRRSTSAVEQDENGIKEGETPIKVEFTII 465
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Match: D7FSN9_ECTSI (Heat shock protein 70-putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSN9_ECTSI) HSP 1 Score: 159 bits (402), Expect = 4.840e-37 Identity = 177/574 (30.84%), Postives = 247/574 (43.03%), Query Frame = 2 Query: 338 EDYVVAIGLGTSCTACSWRRAAD-AAVFVEVPDTIVRIEDVRGKTPTVLLIRGKLDPHREKAFEHAGVEALGRGAESRSREEKKGIPYNAQLFQRFKMV----------RWSCRCQHLLLTVLLVRRRRGFLMILHSDYWVDDLGSGELHRKNRKATTDKTCTTQRPPVSPGWPS*SCGTRSSSPSSTSKTSLWRTWLGRVCNPKAFRGC*PSLHAARLRRKALCGMLPSNPASSKAKTMGSTLSYAPSLWPLASRSGPTWTGQLATPTCMCNMLFLTLLATHRRTTFASAARFSSTKSTRRASNKWETPSARREVQRTWTINSRPSS*ASLGSVAPDDAGVFLLESF-QKDGMYRVLRNWEEGNIGLRRVEDSCRVVLSEM------VKALDVNEPATAMDTARTETSRGHEGGFDGGPNAMESAALILSRLGRVRLPRIAEAVSAKLNLEELQGLTSVVMVGGFAGSVHVQEVVEKRVEDKYPDKSVKMVTPEKNPDLAIVQGAARYV------GSLGSGLKHPTSAPQFTAVNCDLSYGILASEPGSWHA-AVFDAYLLKGKGYPHGHTIT 1984
+D+VVAI LGTSCTA SW+ D A + VPD ED+ GK+PT LLI G +K F G EA GR E++ R IP+ AQLF+RFKM+ S + + +L+ + F++ L V +G H + + T PV P+ +++ + K L P A + R+R K L ++ + S PSL L SG W V R + + + SVA +AG LESF YR+ + WE IGLR V+ CR+ LSE+ V +++E + TE GH G FD + +L + + + I+ AVS +L LQGL++VVMVGGF+GS+HVQE V V KYPD SV++ P K+PDLAIV+GAA +V G++G G + +AP+F AV SYGI+ SE G A FD + LKG+GY H +T
Sbjct: 2 KDFVVAIDLGTSCTAFSWKSIVDPAGPSIGVPDMKPN-EDIIGKSPTTLLIAGSTGS--DKMFRPTGAEAYGR--EAQHRYANGDIPHGAQLFKRFKMIYDDLVDAVTKSTSRKAEMMLMDI--------FVIALEYIKSVALMGMTLTHAVSAEDVTWVLTV----PVCCSEPAKHFMREAATKAGFIKGGNDDEGLVLCMEPIAACLALGNRLQWRMRDKYL--VIDCGGGTVDISAFEVISSAPPSLEQLGEASGGPWGST--------------------------------------------------NVDRLFEAYLKDF----VLSVA-QEAGERSLESFFASSASYRINQAWERAKIGLRSVDHDCRIDLSELSREPLEVTTEEMDEGRRLKNRGGTEFVGGH-GTFD-----LVLRPALLRKFFKEQCKNISGAVSEQLERPHLQGLSAVVMVGGFSGSMHVQEAVRACVARKYPDGSVEVSIP-KSPDLAIVEGAAHFVSAPPASGAVGPGGQQLPAAPRFAAVTSANSYGIVVSETGGGVVPAFFDPFFLKGQGYEMNHMVT 494
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Match: A0A6H5JT12_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT12_9PHAE) HSP 1 Score: 139 bits (350), Expect = 1.480e-30 Identity = 100/238 (42.02%), Postives = 134/238 (56.30%), Query Frame = 2 Query: 1304 SVAPDDAGVFLLESF-QKDGMYRVLRNWEEGNIGLRRVEDSCRVVLSEMVKA-LDVNEPATAMDTARTETSRGHEGGFDGGPNAMESAA--LILSRLGRVRLPRIAEAVSAKLNLEELQGLTSVVMVGGFAGSVHVQEVVEKRVEDKYPDKSVKMVTPEKNPDLAIVQGAARYV------GSLGSGLKHPTSAPQFTAVNCDLSYGILASEPGSWHA-AVFDAYLLKGKGYPHGHTIT 1984
SVA +AG LESF YR+ + WE IGLR ++ CR+ LSE+ + L+V + MD R + G F GG E +L + + I+ AVS +L LQGL++VVMVGGF+GSVHVQE V V +YPD SV++ P K+PDLAIV+GAA +V G++G + +AP+F AV SYGI+ SE G A FD + LKG+GY HT+T
Sbjct: 245 SVA-QEAGARALESFFASSASYRINQAWERAKIGLRSLDHDCRIDLSELSREPLEVTKDE--MDEGRRLKNIGGTE-FVGGHGTFELVLRPALLRKFFNNQCENISGAVSEQLERPHLQGLSAVVMVGGFSGSVHVQEAVRACVARRYPDGSVQVSIP-KSPDLAIVEGAAHFVSAPLPSGAVGLDGQQLPAAPRFAAVTSANSYGIVVSETGGGVVPAFFDPFFLKGQGYEMNHTVT 477
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Match: A0A6H5JYS2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS2_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 3.220e-12 Identity = 48/100 (48.00%), Postives = 61/100 (61.00%), Query Frame = 2 Query: 332 GDEDYVVAIGLGTSCTACSWRRAAD-AAVFVEVPDTIVRIEDVRGKTPTVLLIRGKLDPHREKAFEHAGVEALGRGAESRSREEKKGIPYNAQLFQRFKM 628
G++++VVAI LGTSCTA SW+ AD A + VPD +D+ GK+PT LLI G R F G EA GR E++ R IP+ AQLF+RFKM
Sbjct: 34 GEKEFVVAIDLGTSCTAFSWKSLADPAGPSIGVPDMKPN-DDIIGKSPTTLLIAGSTGSDR--MFRPTGAEAYGR--EAQRRYAIGDIPHGAQLFKRFKM 128
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Match: A0A6H5K4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4X7_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 4.110e-12 Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 1 Query: 853 VALEHIKDVALENLARSG---VQPKSVSWVLTVPACCTPAAQSFMRDASIKSGLIEGEDDGEHLVVCSEPVAACLALWPD----LDWTVGNTYMYVQYAVFDAVGDPSPYNICQRCAFQLDKVDPPSLEQVGDTISEA*GSTYVDDQFEAFL 1287
+ALE+IKDV + L + ++ + WVLTVPA + ++FMR A++++GLI+ E+D EHL +C EP AACL + W G M V D G + ++DP LE++ + GST D +F+ F+
Sbjct: 135 LALEYIKDVIINRLNNADSHTLRASDIRWVLTVPAIWSSFGKAFMRSAALRAGLIQDENDMEHLRLCLEPEAACLTVEHHHHNIRKWETGMKVM-----VLDCGG-----GTVDITTHHVVRMDPLGLEELEEPTGGPWGSTTADTKFKLFI 276
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Match: D7G266_ECTSI (Heat shock protein 70 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G266_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 2.310e-9 Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 1 Query: 853 VALEHIKDVALENLARSG---VQPKSVSWVLTVPACCTPAAQSFMRDASIKSGLIEGEDDGEHLVVCSEPVAACLALWPDL----DWTVGNTYMYVQYAVFDAVGDPSPYNICQRCAFQLDKVDPPSLEQVGDTISEA*GSTYVDDQFEAFLMSFAR 1302
+ALE+IKDV + L ++ ++ + WVLTVPA + +FMR A++++GLI+ E+D EHL +C EP AACL + W G M V D G + +P LE++ + GST D +F+ F+ R
Sbjct: 135 LALEYIKDVVINRLNKADSHTLKAFDIRWVLTVPAIWSSFGTTFMRTAALRAGLIQRENDMEHLRLCLEPEAACLTVEHHHRNVHKWENGMKVM-----VLDCGG-----GTIDITTHHVVSTNPLGLEELEEPAGGPWGSTTADAKFKLFIKELLR 281
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Match: A0A6H5JDD7_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDD7_9PHAE) HSP 1 Score: 65.5 bits (158), Expect = 5.610e-7 Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 2 Query: 1310 APDDAGVFLLESF-QKDGMYRVLRNWEEGNIGLRRVEDSCRVVLSEMVK-ALDVNEPATAMDTARTETS-RGHE--GGFDGGPNAMESAALILSRLGRVRLPRIAEAVSAKLNLEELQGLTSVVMVGGFAGSVHVQEVVEKRVEDKYPDKSVKMVTPEKNPDLAIVQGAARY 1810
A AG + SF R+++ WE +G + D CR+ L+E+ L+V MD AR + + G E GG+ G + + + + + + I++AV+ +L+ ELQG+ SVVMVGGF+ + VQE + V +K P V ++ + P LAI +GA +
Sbjct: 284 AASGAGKRAITSFLNSSAKLRIMQAWETSKVGWKDKNDECRIDLTELGNYPLEVT--MEDMDRARDDKNGHGEELVGGY--GTSVLVLKPAWMRKAFQQPIESISQAVAEQLDEPELQGVKSVVMVGGFSENFLVQEAIRTCVLEKRPRADVHVLVHAR-PGLAIAEGATFF 450 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16984.1 >prot_C-linearis_contig95.16984.1 ID=prot_C-linearis_contig95.16984.1|Name=mRNA_C-linearis_contig95.16984.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=293bp MYRVLRNWEEGNIGLRRVEDSCRVVLSEMVKALDVNEPATAMDTARTETSback to top mRNA from alignment at C-linearis_contig95:314532..323775+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16984.1 ID=mRNA_C-linearis_contig95.16984.1|Name=mRNA_C-linearis_contig95.16984.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9244bp|location=Sequence derived from alignment at C-linearis_contig95:314532..323775+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:314532..323775+ >mRNA_C-linearis_contig95.16984.1 ID=mRNA_C-linearis_contig95.16984.1|Name=mRNA_C-linearis_contig95.16984.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1758bp|location=Sequence derived from alignment at C-linearis_contig95:314532..323775+ (Chordaria linearis ClinC8C monoicous)back to top |