Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 1 |
| Model size | 1586 |
| Cds size | 222 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930813.7177217-UTR-C-linearis_contig95:277348..277778 | 1622930813.7177217-UTR-C-linearis_contig95:277348..277778 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig95 277349..277778 + |
| 1690881263.3405912-UTR-C-linearis_contig95:277348..277778 | 1690881263.3405912-UTR-C-linearis_contig95:277348..277778 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig95 277349..277778 + |
| 1622930813.7569857-UTR-C-linearis_contig95:278000..278934 | 1622930813.7569857-UTR-C-linearis_contig95:278000..278934 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig95 278001..278934 + |
| 1690881263.360564-UTR-C-linearis_contig95:278000..278934 | 1690881263.360564-UTR-C-linearis_contig95:278000..278934 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig95 278001..278934 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930813.7348804-CDS-C-linearis_contig95:277778..278000 | 1622930813.7348804-CDS-C-linearis_contig95:277778..278000 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 277779..278000 + |
| 1690881263.3518398-CDS-C-linearis_contig95:277778..278000 | 1690881263.3518398-CDS-C-linearis_contig95:277778..278000 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 277779..278000 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16979.1 >prot_C-linearis_contig95.16979.1 ID=prot_C-linearis_contig95.16979.1|Name=mRNA_C-linearis_contig95.16979.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=74bp
MSFSPVLRALAVSPFPTFFVSFFLVFSSRCFCRALLREGLAMGLFRGMGS
TTLREGLQQTVYFPTVSVLESQA* back to topmRNA from alignment at C-linearis_contig95:277349..278934+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig95.16979.1 ID=mRNA_C-linearis_contig95.16979.1|Name=mRNA_C-linearis_contig95.16979.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1586bp|location=Sequence derived from alignment at C-linearis_contig95:277349..278934+ (Chordaria linearis ClinC8C monoicous)
CGTGAGGTACCTAATAGATGGCATTCCATGGCGGGGACCCGGGATGATGC
TCGACCGCATGGTGTCTTTTTAGTCAGATTTTGTTTTCGGCCTCGGTTTC
TCGGTCAGTTTTGGCTGGTAAACTGGGCATGGACGCCTTCAGTAGGCAGA
GGATATGATGGCAGAACCCACGCTGTGCTGTGTTTTTCATGCCCCCACCA
CGCCGCTCCGAATTGACCTTACGTGTCTACTGATTGATCCATATGTGTGT
GCTGCGAAGTATATATTTTTCATTTAGGCGAAGACGATGAGAGGCGCCTG
TGCGGTAGACCTCGTGAGAAAGTGAGTGAGACTGTTCCCAAGCACAAGAG
TGTTAGTTGACCGCACCCAGGTGGGTTGGCGATTGCGTTAGTTGCTCGGT
GTTTCAAGGTCGTGATCACAGCAGTACGTAATGTCTTTCTCCCCAGTCTT
GCGGGCCCTTGCCGTGTCTCCGTTCCCGACTTTCTTTGTGTCCTTTTTTT
TGGTTTTTTCTTCCCGTTGTTTTTGTCGGGCTTTGCTCAGGGAGGGGCTA
GCGATGGGTTTGTTCCGGGGCATGGGATCGACCACGCTGAGAGAAGGGCT
CCAGCAGACCGTTTATTTCCCGACGGTGAGTGTGCTTGAGAGTCAGGCCT
GAAACTGCGGCAGGCATTTAACGGGTTTTTCGTTCTACTCGACACGCTGT
CCTGTTTTCGACTTATTTTCGGTTATTTTTGCTTCCGTCCAGGTTTTGTT
GAATTGATGTGCGAGGGACATTGGTGTCTTGGTACGAATCGTTTGATCGT
TTGATCGTTTGATCGTTTGGTCACGTCCTTGACTTGCGGCACGCTTTTGG
AACAATACCTCGGCCTACGACGGCGAGCTATCAATAGCGCGGTAGCACAG
AGTCGCATCGACAATCAGCGGCAGCGGCAGCGGCAGCGACAGTAGCATCA
GCAGCAATGCACAGTTGTCGCCAAGAGTGATTTCGGGGAGAGCGAAGATT
GCGGTAGGCGCGCTTCTATTATATTCTGGCGCGTGTCTGTGATTTTGCGT
GTTTTCTGCTTGGGGAAGCAGCAGCGACCGCGCAAAGTTCTCACACGGAG
TTACTACCCCCGCGTTGACACACGATCCTTTGTCGTAATTACTCCGAAAA
CACAGACGAAAGAAAAAGAAAGGATCCGAACGTCCGTATCCGCGAATTAC
AGCTGGGCGGTGGAAATACTCTTACGGTGCCCCTTTTGGGACAGCGACGT
AGCGGGGTGGATATGTATGTACTGGGGTTGTCGAACGTGTGTCGTGATGG
CCTGTGACTGCCATGGGGAGAATGGGTCTCCACCCTTTGGTTGCATATAC
CTGGCTGGTGCGCCGGGGAACCCATGCTAATGATTCGTGATCGTAGTAGG
GAGTAGGGCGAGAGTGGCTGCGATGGAGCTAAAAGCCAGACGACGAGCCG
AGAGTCCGTGGCAAGCGTAAGGGCGCGCAGAGGCAGCGCCACTTGGCGAG
CCGATGAACCTGCAATGGAAATGCCGGTCTTACGGTGCCCTGATTTCGGC
GAACTGTGAGTAGGGGGTTGTGACGTATGTGGTGAG back to topCoding sequence (CDS) from alignment at C-linearis_contig95:277349..278934+ >mRNA_C-linearis_contig95.16979.1 ID=mRNA_C-linearis_contig95.16979.1|Name=mRNA_C-linearis_contig95.16979.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at C-linearis_contig95:277349..278934+ (Chordaria linearis ClinC8C monoicous)
ATGTCTTTCTCCCCAGTCTTGCGGGCCCTTGCCGTGTCTCCGTTCCCGAC
TTTCTTTGTGTCCTTTTTTTTGGTTTTTTCTTCCCGTTGTTTTTGTCGGG
CTTTGCTCAGGGAGGGGCTAGCGATGGGTTTGTTCCGGGGCATGGGATCG
ACCACGCTGAGAGAAGGGCTCCAGCAGACCGTTTATTTCCCGACGGTGAG
TGTGCTTGAGAGTCAGGCCTGAATGTCTTTCTCCCCAGTCTTGCGGGCCC
TTGCCGTGTCTCCGTTCCCGACTTTCTTTGTGTCCTTTTTTTTGGTTTTT
TCTTCCCGTTGTTTTTGTCGGGCTTTGCTCAGGGAGGGGCTAGCGATGGG
TTTGTTCCGGGGCATGGGATCGACCACGCTGAGAGAAGGGCTCCAGCAGA
CCGTTTATTTCCCGACGGTGAGTGTGCTTGAGAGTCAGGCCTGA back to top
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