mRNA_C-linearis_contig95.16977.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16977.1
Unique NamemRNA_C-linearis_contig95.16977.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: D7FLY8_ECTSI (Endothelial protein B9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY8_ECTSI)

HSP 1 Score: 460 bits (1183), Expect = 5.230e-162
Identity = 229/278 (82.37%), Postives = 247/278 (88.85%), Query Frame = 1 
Query:   31 SLAGYNRTITRDKPAFGETVDPFNKTAAGVSPAVSRQRSDAGGGLAAPSGAANFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGYNRPEGMPGIHQGQRFEPYAAGAGGGNAHHKVSSSIFGNTYTSGSKTSFVG 864
            +LA   RTITRDKPAFG+T DPFNKTAAGVSPA +              GA+NFF+MCTGQVEFGEFGSLD+LYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQ+T+VVWNFPIDVTFK+TNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQR RAWVSGAYPEFFDSKFVTRGEGREVTRVR+SGTVKVSLDV+TRGM++FGYNRPEGM G+ Q QRFE Y+   GGG + H+VSSSIFGNT  +GSKTSFVG
Sbjct:    3 TLAAMTRTITRDKPAFGKTTDPFNKTAAGVSPAATASXXXXXXXXX-XXGASNFFIMCTGQVEFGEFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDVTFKSTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPEFFDSKFVTRGEGREVTRVRRSGTVKVSLDVMTRGMVDFGYNRPEGMQGVSQDQRFESYS---GGGGSSHRVSSSIFGNT--TGSKTSFVG 274
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A6H5KBF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF1_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 1.660e-103
Identity = 156/223 (69.96%), Postives = 174/223 (78.03%), Query Frame = 1 
Query:  196 VMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGYNRPEGMPGIHQGQRFEPYAAGAGGGNAHHKVSSSIFGNTYTSGSKTSFVG 864
            ++C  ++   +FGSLD+LYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQ+T+VVWNFPID+TFK+TNAFGWPR+ALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQR RAWVSGAYPE                             V+  GM +FGYNRPEGM G+ Q QRFE Y+   GGG + H+VSSSIFGNT  +GSKTSFVG
Sbjct:    1 MLCACRLLAPQFGSLDNLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQDTSVVWNFPIDITFKSTNAFGWPRLALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRFRAWVSGAYPE-----------------------------VIMLGMADFGYNRPEGMQGVSQDQRFESYS---GGGGSTHRVSSSIFGNT--TGSKTSFVG 189
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A7S1U2U9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U2U9_9STRA)

HSP 1 Score: 249 bits (635), Expect = 3.330e-79
Identity = 119/235 (50.64%), Postives = 156/235 (66.38%), Query Frame = 1 
Query:  136 RQRSDAGGGLAAPSGAANFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGYNRPEGMPGIHQGQRFEPYAAGAGGGNAHHKVSSSIFGNTYTS 840
            R RS       APS  + F +M TGQ+  G+F   D+LYCRY+L FG+DW + HG D+GLSQIA+R GG + A+VWNFPID TFK+TN FGWPRIA+SV+ VD +GRD + GYGSV+IPT  G++ERV HMYAP  SS+ Q+L AW+ G  PEFFDS F  +G GR+VTRVR  GTV+V+L+VL RG+  FGY+           +R    A      +   +   +++G+T  S
Sbjct:    4 RDRSSRRRAAEAPSAPSEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYDYXXXXXXXXXSERLASLAGAFASTDKDARAEKTVYGSTLRS 238
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BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A7S1U318_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U318_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.560e-78
Identity = 114/194 (58.76%), Postives = 144/194 (74.23%), Query Frame = 1 
Query:  136 RQRSDAGGGLAAPSGAANFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGYN 717
            R RS       APS  + F +M TGQ+  G+F   D+LYCRY+L FG+DW + HG D+GLSQIA+R GG + A+VWNFPID TFK+TN FGWPRIA+SV+ VD +GRD + GYGSV+IPT  G++ERV HMYAP  SS+ Q+L AW+ G  PEFFDS F  +G GR+VTRVR  GTV+V+L+VL RG+  FGY+
Sbjct:    4 RDRSSRRRAAEAPSAPSEFHLMVTGQIRSGDFDGADNLYCRYSLVFGHDWTVCHGPDSGLSQIARRGGGVDPALVWNFPIDATFKSTNPFGWPRIAISVYGVDGLGRDVIKGYGSVVIPTCPGKYERVVHMYAPVSSSLAQQLLAWIGGTPPEFFDSSFTAQGTGRDVTRVRACGTVRVTLNVLPRGLAAFGYD 197
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: F0YE40_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE40_AURAN)

HSP 1 Score: 222 bits (566), Expect = 2.250e-69
Identity = 104/175 (59.43%), Postives = 129/175 (73.71%), Query Frame = 1 
Query:  190 FFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGY 714
            FFV+  GQVE GEF   D LY RY  SFG DW +V G++TGLSQIA++A G + +VVWNFP+D++FK+TNA GWPR+++SV+ VD +GRD V GYGSVLIP   G ++R  H Y P PSS+ QR  +W +G Y EF+DSKFV +GE REVTRV  +G VKV  DVLTRGM   GY
Sbjct:   17 FFVVVNGQVESGEFPD-DDLYVRYGFSFGPDWTVVDGIETGLSQIARKAPGVDQSVVWNFPVDISFKSTNAHGWPRMSISVYGVDGLGRDVVRGYGSVLIPPFPGGYDRYIHTYVPVPSSLWQRFVSWFTGTYAEFYDSKFVAQGENREVTRVESTGVVKVKFDVLTRGMETLGY 190
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A836CI87_9STRA (B9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI87_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.070e-67
Identity = 101/161 (62.73%), Postives = 126/161 (78.26%), Query Frame = 1 
Query:  211 QVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTR 693
            QVE+GEF   D+LY RY LSFG+DW ++HGL+TGLSQ+A+R+G    AV WNFPIDV  K+T AFGWPR+ALSV+ VD +GRD VVGY SVL+P   G H +  + YAP+ SS+LQR+R W++GAYPEFFD K V R EGREVTRV++ G V+VSL V+TR
Sbjct:    9 QVEYGEFSGYDNLYVRYALSFGHDWTVLHGLETGLSQMARRSGSGGEAV-WNFPIDVALKSTCAFGWPRLALSVYAVDALGRDAVVGYASVLVPPTPGPHAQWVYTYAPKASSILQRVRGWIAGAYPEFFDPKLVARSEGREVTRVQRRGRVRVSLTVMTR 168
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A8J2WZC0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZC0_9STRA)

HSP 1 Score: 218 bits (555), Expect = 3.650e-67
Identity = 103/189 (54.50%), Postives = 135/189 (71.43%), Query Frame = 1 
Query:  163 LAAPSGAANFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGYNRPEG 729
            LA+ S  + FFV+  GQ+E GEF   D LY RY  SFG DW +V G++ GLSQIA++A G + +VVWNFP+D++FK+TNA GWPR+++S++ VD +GRD V GYGSVL+P  AG +ER  H Y P PSS+ QRL +W++G Y EF+DSK V + + REVTRV  +G VKV   VLTRGM   GY+   G
Sbjct:   48 LASKSDFSAFFVVVNGQLESGEF-PYDDLYVRYGFSFGPDWTVVDGIENGLSQIARKAAGCDNSVVWNFPVDISFKSTNAHGWPRMSVSIYGVDSLGRDVVRGYGSVLLPPFAGDYERYIHTYIPVPSSLWQRLVSWLTGTYAEFYDSKLVAQSDNREVTRVESTGVVKVKFSVLTRGMAALGYSLAPG 235
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A7S2BJK9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJK9_9STRA)

HSP 1 Score: 218 bits (554), Expect = 7.090e-67
Identity = 102/184 (55.43%), Postives = 136/184 (73.91%), Query Frame = 1 
Query:  187 NFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLD---TGLSQIAQR--AGGQET---AVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGY 714
            +F++M TGQVE G+FG  D+LYC+Y+ S+G+DW +V GLD    GLSQIA++  AG   T   +VVWNFPIDV FK+TNAFGWPRI+ +V+ +D +GRD   GYGS+L+PTQ G +++   MYAP PSS  QR+   ++G YPEFFD+KFV++G  REVTRV  +G+VKV + V T+ M  FGY
Sbjct:   29 SFYLMITGQVESGDFGGADNLYCKYSFSYGHDWTVVTGLDGVTAGLSQIAKKGSAGMDNTFGGSVVWNFPIDVAFKSTNAFGWPRISFTVYGIDALGRDKTYGYGSMLVPTQPGHYQKEIEMYAPMPSSWYQRILNGITGTYPEFFDTKFVSQGSNREVTRVESTGSVKVQVQVATKDMQKFGY 212
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A7S1CLA7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLA7_9STRA)

HSP 1 Score: 214 bits (546), Expect = 4.850e-66
Identity = 96/179 (53.63%), Postives = 128/179 (71.51%), Query Frame = 1 
Query:  178 GAANFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGY 714
            G + FFVM TGQ+  GEF   + LYC++ ++ G DW +V G   GLSQ+A++A G +  VVWN+PIDV+FK TNAFGWPR+ LSVF VD +GRD + GYG++ +PT  GR+ R    + P  SS+ Q   AW++G  PEFF+ KFV++GEGREVTRVR +G V+V ++VLTRGM   GY
Sbjct:   14 GPSGFFVMATGQIRRGEFSDGEKLYCKFDVACGPDWKVVQGHAQGLSQVAKKAAGGDDGVVWNYPIDVSFKATNAFGWPRLVLSVFEVDALGRDVIRGYGALHVPTVPGRYTRFVRTFTPASSSLFQEFTAWLTGNRPEFFNPKFVSQGEGREVTRVRSTGVVQVDINVLTRGMSEHGY 192
[Close]
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Match: A0A218UVW0_9PASE (B9 domain-containing protein 1 n=13 Tax=Passeriformes TaxID=9126 RepID=A0A218UVW0_9PASE)

HSP 1 Score: 201 bits (510), Expect = 5.400e-61
Identity = 93/195 (47.69%), Postives = 128/195 (65.64%), Query Frame = 1 
Query:  163 LAAPSGAANFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHGLDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDMGRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFFDSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGYNRPEGMPGIHQ 747
            +AAPS    F +  +G++E GEF   D LYC+++  +G DW    GL+ G+SQI  ++    T +VWNFPID+TFK+TN FGWP+I LSV+  D  G D V GYG+V +P   GRH+R   M+ P+ +S LQ+L +W +G  PEF D + V RGEGREVTRVR  G V VS +V+T+ +   GY+  +G  G+HQ
Sbjct:    1 MAAPS---VFLLAVSGEIESGEFPGFDDLYCKFSFVYGQDWVPTAGLEEGISQITSKSSVSPTTLVWNFPIDITFKSTNPFGWPQIVLSVYGPDFFGHDVVRGYGAVHVPFVPGRHKRTIAMFVPESTSRLQQLTSWFTGRRPEFTDPRVVARGEGREVTRVRSQGFVTVSFNVMTKDLHKLGYDVGQGPQGLHQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLY8_ECTSI5.230e-16282.37Endothelial protein B9 n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KBF1_9PHAE1.660e-10369.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U2U9_9STRA3.330e-7950.64Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U318_9STRA1.560e-7858.76Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0YE40_AURAN2.250e-6959.43Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A836CI87_9STRA1.070e-6762.73B9 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A8J2WZC0_9STRA3.650e-6754.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2BJK9_9STRA7.090e-6755.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1CLA7_9STRA4.850e-6653.63Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A218UVW0_9PASE5.400e-6147.69B9 domain-containing protein 1 n=13 Tax=Passerifor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:270323..273890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score461.1
Seed ortholog evalue3.9e-127
Seed eggNOG ortholog2880.D7FLY8
Preferred nameB9D1
KEGG koko:K16744
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001701,GO:0001944,GO:0002065,GO:0003674,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007423,GO:0007568,GO:0007610,GO:0008104,GO:0008150,GO:0008158,GO:0008340,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010259,GO:0015630,GO:0016020,GO:0016043,GO:0022406,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030326,GO:0030537,GO:0030855,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035177,GO:0035869,GO:0036038,GO:0036064,GO:0038023,GO:0042733,GO:0042995,GO:0043009,GO:0043010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051640,GO:0051641,GO:0051716,GO:0060089,GO:0060173,GO:0060271,GO:0060429,GO:0060563,GO:0060756,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072358,GO:0072359,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1904491,GO:1905515
EggNOG free text desc.hedgehog receptor activity
EggNOG OGsKOG4027@1,KOG4027@2759
Ec32 ortholog descriptionB9 domain
Ec32 orthologEc-22_000220.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons7
Model size867
Cds size867
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930813.5342612-CDS-C-linearis_contig95:270322..2704951622930813.5342612-CDS-C-linearis_contig95:270322..270495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 270323..270495 -
1690881263.272114-CDS-C-linearis_contig95:270322..2704951690881263.272114-CDS-C-linearis_contig95:270322..270495Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 270323..270495 -
1622930813.5487783-CDS-C-linearis_contig95:270931..2710311622930813.5487783-CDS-C-linearis_contig95:270931..271031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 270932..271031 -
1690881263.2843447-CDS-C-linearis_contig95:270931..2710311690881263.2843447-CDS-C-linearis_contig95:270931..271031Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 270932..271031 -
1622930813.5604787-CDS-C-linearis_contig95:271488..2716531622930813.5604787-CDS-C-linearis_contig95:271488..271653Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 271489..271653 -
1690881263.293431-CDS-C-linearis_contig95:271488..2716531690881263.293431-CDS-C-linearis_contig95:271488..271653Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 271489..271653 -
1622930813.5758965-CDS-C-linearis_contig95:271979..2721111622930813.5758965-CDS-C-linearis_contig95:271979..272111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 271980..272111 -
1690881263.3022323-CDS-C-linearis_contig95:271979..2721111690881263.3022323-CDS-C-linearis_contig95:271979..272111Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 271980..272111 -
1622930813.5936606-CDS-C-linearis_contig95:272657..2727261622930813.5936606-CDS-C-linearis_contig95:272657..272726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 272658..272726 -
1690881263.3108368-CDS-C-linearis_contig95:272657..2727261690881263.3108368-CDS-C-linearis_contig95:272657..272726Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 272658..272726 -
1622930813.6096954-CDS-C-linearis_contig95:273307..2733851622930813.6096954-CDS-C-linearis_contig95:273307..273385Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 273308..273385 -
1690881263.3197653-CDS-C-linearis_contig95:273307..2733851690881263.3197653-CDS-C-linearis_contig95:273307..273385Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 273308..273385 -
1622930813.6281023-CDS-C-linearis_contig95:273740..2738901622930813.6281023-CDS-C-linearis_contig95:273740..273890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 273741..273890 -
1690881263.32884-CDS-C-linearis_contig95:273740..2738901690881263.32884-CDS-C-linearis_contig95:273740..273890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 273741..273890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16977.1prot_C-linearis_contig95.16977.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 270323..273890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16977.1

>prot_C-linearis_contig95.16977.1 ID=prot_C-linearis_contig95.16977.1|Name=mRNA_C-linearis_contig95.16977.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp
MSACAERRTVSLAGYNRTITRDKPAFGETVDPFNKTAAGVSPAVSRQRSD
AGGGLAAPSGAANFFVMCTGQVEFGEFGSLDSLYCRYTLSFGNDWYIVHG
LDTGLSQIAQRAGGQETAVVWNFPIDVTFKTTNAFGWPRIALSVFRVDDM
GRDTVVGYGSVLIPTQAGRHERVAHMYAPQPSSMLQRLRAWVSGAYPEFF
DSKFVTRGEGREVTRVRQSGTVKVSLDVLTRGMINFGYNRPEGMPGIHQG
QRFEPYAAGAGGGNAHHKVSSSIFGNTYTSGSKTSFVG*
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mRNA from alignment at C-linearis_contig95:270323..273890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16977.1 ID=mRNA_C-linearis_contig95.16977.1|Name=mRNA_C-linearis_contig95.16977.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3568bp|location=Sequence derived from alignment at C-linearis_contig95:270323..273890- (Chordaria linearis ClinC8C monoicous)
ATGTCTGCGTGTGCTGAACGGCGCACGGTTTCTCTTGCGGGATACAACAG
AACCATCACCCGAGACAAGCCGGCGTTCGGGGAAACTGTCGACCCATTCA
ACAAGACAGCAGCGGGGGTTTCTCCGGCGGTGAGTCGACAGAGATCGGAC
GTCGTACAGCTGCCTGCAACCTACACAAAGTATATTTACATGTTTCTACA
TGCACGTAACAGCACGTAAGTAGACTAGATCCCCTGAAATCTCCTTAGGC
TATCAGCCAAGGAGCCGCCAGGGCACCGGGGTGTGGTGTACCCGACCCCG
CTCTTCTGCGCAACTCGAAGCCTTCCTCCTCTCGCTTCTTCTATTTAGCC
GGCAAAAAAATCTGCTGTTATTGTTGTTTAGACAATGCTCAAGACAACCC
TTACTGTAGTAGAGAGTGGCATGGATTCCTGCGGGGGCGCTAAATGCTCT
GCTGTTTTGACGATTGTTCGGTTTATCAAAACGTTCTGTTGCGCGCTGTC
GAAAGGCCGGAGGAGGGCTAGCGGCGCCTTCAGGGGCGGCTAATTTCTTC
GTGATGTGTACTGGTCAGGTGGAATTCGGCGAGGTAGGAAAGATTGAAGA
GACCCCAGCTGCTTATCCGTCAATGATCCTGCGTGATTCACTCGGTGGTA
ACTCTTGACGACGTCTCCTGACCATTCTTCCGAACTCCCGAAATTGTTGT
TGTCGATGTCGTTGTCTTTGTTGTTTGTTGTTGTTTGTTGTTGATGTCTT
CACATTAAAAACAATCCCGATCTCCACCCGGTACCCCCCTTTGTCCGTAC
TGATCCAACGCAAGACACGGCCAAATCCCGTGGTCACAGGCTAACTTAAC
CAAAAACAGGTATACTTAAAATGGATCTGAAGGGTTCCGGCCTTTTGATT
TCATCGCCCTGCTGACCCTTCAGATCCATTTGAAACCACGGTACTTGGCT
GGTGATGGGCTGTTTTCTCCCAAGATTTCAAAACGAAATGAGAATCACGC
ACTCTTTACGAGATACTTCAAGGCGAAATGAGAGGTGTGAGTAATATTAT
CTGAAAGAACGCTTCGGATACCCTTCCTACTGTAAGGGATCAAGGGCTTT
CGTTGCGGGAACCACGCACAGAGATTTCTGCCCGAACATGTATGTGCTTG
GTCCTTAATTGCAGTTTGGGAGCTTGGATAGCCTCTACTGCCGGTATACC
CTCAGCTTTGGGAACGACTGGTACATCGTCCACGTGAGTACCGCACTTAA
ACCCTTGAAACCATATTCGCCGCTTTATGGCTAGATATGTCAAACGAGCC
GAAATGCCGACGGGTGTCTCTGAACTTCCAACCCGCTTTCTCGGACCAGC
TCATGATATCAAGGAAGTGGCATTGTAGAAAGAGAACAACAAGTCGTACA
GCAGCAGTCTAGTTTTAGACATGTGTTGTCGCTGATTTGTCGTGGCTGCG
TGCGGTCAGGGTGTGGCGAGGTTACAAAAATTCTGCAGGAGTCGGCACCA
AGCAGTACCTCGCACAATTGCCGCCCAAACGCAAACCAAGTCGGCCGTAC
GAAAAAACTTGATTGAAAGTTACAGAAATGTCGATTGTTCAACGCCCCTC
CGGCACACCAAAAAATCAGTTTGTTTTACTCACACCTTGCTTTAATGGGC
GATTGGCGGACAAACCCGCTGGGGCCGGCAGGGACACCCAAACGAGCGCT
TGCTAACTTGGCGTACTTGTAAGGTTGTTAACTCTGTCTGTGTGCGTCTC
ACTCGGCGGTGCTCGCTTCGTTCTCTCAGGGGCTCGACACGGGCTTGTCA
CAGATCGCGCAGCGGGCGGGAGGGCAGGAAACGGCGGTTGTCTGGAACTT
CCCCATCGACGTAACCTTCAAAACCACGAATGCCTTTGGGTGGCCTCGCA
TTGCCCTCAGCGTAAGTAGGCCATGCCCATTCGTTCTGCAGCGGTATGAT
CACGGCCGGTGGTGGAGAGCATGAGTCGGTTGCCGATTGCCGTCCCCTTC
CCCCTGTCCCGGCAGCAAGTACGCGTCATGGGAAAACGGGGATCAACGCC
CGTTAGCTCTTTCACGATTACAATACATCAATGCCCTCGGACTCCGTAAA
GAGCGCACTCAACGCGGAATACCCTCTCTTAAGTGAGCCTGGTGCTATAA
TAGCCCTTCCTCCTGCCCGGTGTCCTTACCACACCCACCCCCCGTCCATT
TGCACTCGCGCCATGCCTGCACGATACCATACCACAGGTGTTTCGAGTGG
ACGATATGGGCCGAGACACGGTTGTGGGGTACGGGTCCGTCTTAATTCCC
ACCCAGGCAGGACGACATGAGAGGGTGGCACACATGTACGCCCCTCAGCC
GTCGTCCATGCTCCAGAGACTCAGGGCTTGGGTGTCCGGGGCGTATCCTG
AGGTGAGAATCTATCCATGTCTGGCTTCTGACGTTGACTCAACGGGAAAG
GGGACTTCATCGTGCATTCCTGTCGATATGCTTAGGGAGGGAGCAGCTAC
AGCTTGTGTTGGAAAAGTATCGTACAGGTTGTTTGGGCGGCACTCAAGTG
GACTCGGGTGGTGGGTACTAGAAGTATTTCGTTTCTACCCGGTGAGGGAT
AGATTGATGCGAGTGATCCACAGCGCTCGAAAGCTGACGAATGCCGTGGA
CACCTTCGAAGAGAAAGATACAACTTGATTCGTCCGTTTAAGAGAAGAGA
AAAACATAAAGTACATCGTTGCTTCGCTTGCCATGTGGTTGCCGCACGAT
GCTTGGTGCATATCCCCGTCATGCGACACTTAACACTGTCTCGCACACGG
CCCTTCATTCGCCACCCGCCACATCCTCTATGTTCCTCCAACTTGGGATT
GATTTGCAGTTTTTTGACTCCAAGTTCGTGACACGCGGCGAAGGGAGGGA
GGTGACCCGAGTAAGGCAGTCTGGCACGGTCAAAGTGTCGTTGGATGTGC
TTACTCGAGGTGAGCTGTGAGGGTGGGGGCGAGGTGAACCGGTTTCTCCG
CCAAGTCGCTATTGCGCCTGAGCTGGAAGCCAAACAAGGATTTTTTGTTC
GGCTCAGGGAAAGAGGTAGGAGTAGGGGAAGGGGCATGCTGTGCTACGGG
TGCGTTGCCCTGACTTTTATGTAGATGCGTATTGACGCGCGGTTGGACTG
AAACACCCAATTTTGGCTAACGTGGGCATGGTGACGAAGTCAGAGTTCGA
GGAGATTGACCGGTCCCTGAAGATGCAACCGTTCAACTAGCCGAGACGAA
GCCTGAAGACCTCAAGACGTTTTTTTTTTAAATATGCAACCGCCAAAGCT
CGTCAACCAGTACTCTATGTAGTATTGATTTTCCTTGCTTCCGGTTAATG
GTTGGATGGCCGCGCGGTTCCCTCCACGTTTAAACCTTTGAACAGGTATG
ATAAACTTTGGATACAACCGGCCAGAGGGTATGCCGGGAATTCACCAAGG
CCAGCGGTTCGAGCCATACGCGGCCGGCGCGGGAGGGGGAAATGCCCACC
ACAAAGTGTCGTCCTCAATTTTCGGAAATACTTATACTTCAGGGAGCAAG
ACGAGCTTTGTTGGGTGA
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Coding sequence (CDS) from alignment at C-linearis_contig95:270323..273890-

>mRNA_C-linearis_contig95.16977.1 ID=mRNA_C-linearis_contig95.16977.1|Name=mRNA_C-linearis_contig95.16977.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig95:270323..273890- (Chordaria linearis ClinC8C monoicous)
ATGTCTGCGTGTGCTGAACGGCGCACGGTTTCTCTTGCGGGATACAACAG
AACCATCACCCGAGACAAGCCGGCGTTCGGGGAAACTGTCGACCCATTCA
ACAAGACAGCAGCGGGGGTTTCTCCGGCGGTGAGTCGACAGAGATCGGAC
ATGTCTGCGTGTGCTGAACGGCGCACGGTTTCTCTTGCGGGATACAACAG
AACCATCACCCGAGACAAGCCGGCGTTCGGGGAAACTGTCGACCCATTCA
ACAAGACAGCAGCGGGGGTTTCTCCGGCGGTGAGTCGACAGAGATCGGAC
GCCGGAGGAGGGCTAGCGGCGCCTTCAGGGGCGGCTAATTTCTTCGTGAT
GTGTACTGGTCAGGTGGAATTCGGCGAGGCCGGAGGAGGGCTAGCGGCGC
CTTCAGGGGCGGCTAATTTCTTCGTGATGTGTACTGGTCAGGTGGAATTC
GGCGAGTTTGGGAGCTTGGATAGCCTCTACTGCCGGTATACCCTCAGCTT
TGGGAACGACTGGTACATCGTCCACTTTGGGAGCTTGGATAGCCTCTACT
GCCGGTATACCCTCAGCTTTGGGAACGACTGGTACATCGTCCACGGGCTC
GACACGGGCTTGTCACAGATCGCGCAGCGGGCGGGAGGGCAGGAAACGGC
GGTTGTCTGGAACTTCCCCATCGACGTAACCTTCAAAACCACGAATGCCT
TTGGGTGGCCTCGCATTGCCCTCAGCGGGCTCGACACGGGCTTGTCACAG
ATCGCGCAGCGGGCGGGAGGGCAGGAAACGGCGGTTGTCTGGAACTTCCC
CATCGACGTAACCTTCAAAACCACGAATGCCTTTGGGTGGCCTCGCATTG
CCCTCAGCGTGTTTCGAGTGGACGATATGGGCCGAGACACGGTTGTGGGG
TACGGGTCCGTCTTAATTCCCACCCAGGCAGGACGACATGAGAGGGTGGC
ACACATGTACGCCCCTCAGCCGTCGTCCATGCTCCAGAGACTCAGGGCTT
GGGTGTCCGGGGCGTATCCTGAGGTGTTTCGAGTGGACGATATGGGCCGA
GACACGGTTGTGGGGTACGGGTCCGTCTTAATTCCCACCCAGGCAGGACG
ACATGAGAGGGTGGCACACATGTACGCCCCTCAGCCGTCGTCCATGCTCC
AGAGACTCAGGGCTTGGGTGTCCGGGGCGTATCCTGAGTTTTTTGACTCC
AAGTTCGTGACACGCGGCGAAGGGAGGGAGGTGACCCGAGTAAGGCAGTC
TGGCACGGTCAAAGTGTCGTTGGATGTGCTTACTCGAGTTTTTTGACTCC
AAGTTCGTGACACGCGGCGAAGGGAGGGAGGTGACCCGAGTAAGGCAGTC
TGGCACGGTCAAAGTGTCGTTGGATGTGCTTACTCGAGGTATGATAAACT
TTGGATACAACCGGCCAGAGGGTATGCCGGGAATTCACCAAGGCCAGCGG
TTCGAGCCATACGCGGCCGGCGCGGGAGGGGGAAATGCCCACCACAAAGT
GTCGTCCTCAATTTTCGGAAATACTTATACTTCAGGGAGCAAGACGAGCT
TTGTTGGGTGAGTATGATAAACTTTGGATACAACCGGCCAGAGGGTATGC
CGGGAATTCACCAAGGCCAGCGGTTCGAGCCATACGCGGCCGGCGCGGGA
GGGGGAAATGCCCACCACAAAGTGTCGTCCTCAATTTTCGGAAATACTTA
TACTTCAGGGAGCAAGACGAGCTTTGTTGGGTGA
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