mRNA_C-linearis_contig95.16973.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16973.1
Unique NamemRNA_C-linearis_contig95.16973.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI)

HSP 1 Score: 1051 bits (2719), Expect = 0.000e+0
Identity = 653/957 (68.23%), Postives = 707/957 (73.88%), Query Frame = 1 
Query:  475 APTHFIPKIAPPPNAWKILSHKAAVDLPSKQQQQKSSDRSENRSSGVSLSTAPSXXXXXXXXXXXXXSRSESRDDATQRRAPGVSVSGNGGDVGNEDEXXXXXFRDFGDVPLSVTSIPEPPDMEITINRSSGTPANAQTRPAAAAAAKAAADSANVLEEWVDGEPVEVHHGRARMASSQQPHRPADLAGASGEMKLVEMACLAGLSSTAGKSAGRIMHEELGGFAHLLRGLREDVRPSLRRRVLQAISTVVDSDPTLAPYLLDLD---HGQDSGAALRKXXXXXXXXXXXXXXXXXXXXNKVKTNTKKR-----------------GKGDKNRDRGGRKRSTPATAAAPTSPGAVVGEDDLLERITAILGYHGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVRRAGGVFRALVRRFPVPQVRPPFSSTVGSRVAGFAAATMEXXXXXXXXXXXXXXXXXXXXXXXXXXGDQEAAREGRDWWKDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGRRVSRERLVEEALELTFRLIMSGDVALDALKVDGNLVAALRRVAEGGGQRLQYDAKGVLRRTGPRLSHSQHLAYKCLASLGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPGGGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAERMLPD 3285
            APTHFIPK APPPNAWKILS K+ V+ P      K+SD+S +RS     S++                 S S     Q +  G S  G+  D+ ++D      FRDFGD+PLSVTSIP PPDMEITINRSSGTPANA+TRPAAAAAAKAAADS NVLEEWVDGEPVEVH GR  M SS +P RP  L+G SGEMKLVEMACL GLSS AGKSAGRIM EELG F+HLLRGLR DVRPSL+RRVLQAISTV+DSDP+LAP+ L LD   H  D   A   XXXXXXXXXXXXXXXXXXXX                           G GD                 +P+SPG  VGEDDL+ERITAILGYH V    XXXXXXXXX                     R       FR  V   P+P+VRP FSS+  +   GF                                GD +AAREGRDWWKDE            XXXXXXXXXXXXXXXXXXXXXXXXX               GRGRRVSRERLVEEALELTFRLIMSGD ALDALKVD NLV+A++RVAEGGGQ+LQYD++GVL+R GP L+HSQ LA KCLA+LGAH+WRPK +GQKG+RILCFDGGGTRGVLTLALLKH+EKALGGRQPHEVFDMIVGTSTGGIIAGLAGVK FPV ECE+MYD+LINKIFIKHPGGGMKLALKQAFYDEVGWMKIL+SIL D LM+DSAQDPLRPLI+CPST ISSNPA+VMLWRNYNYPPGHQGRY+GSFR+MVRQAIRATTAAPTFF PLMI+GALYSDGALLCNNPSAVAFHEAKH FPGVPIEMIVS+GTGCFFEEK+EFLEPA LGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRM DMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAE+MLPD
Sbjct:  464 APTHFIPKFAPPPNAWKILSSKSPVEEP------KASDQSGDRSPAAPPSSSVP---------------SGSVGAVGQDKWEGGSSEGSAADIDDDDGEEHDEFRDFGDLPLSVTSIPRPPDMEITINRSSGTPANAETRPAAAAAAKAAADSDNVLEEWVDGEPVEVHRGR--MTSSWKPTRPDGLSGTSGEMKLVEMACLTGLSSRAGKSAGRIMLEELG-FSHLLRGLRGDVRPSLQRRVLQAISTVIDSDPSLAPHFLGLDGLDHPDDDKTAKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGAGD----------------GSPSSPGPAVGEDDLVERITAILGYHMVPGGGXXXXXXXXXFGVPGGVEAAVAPGSGDGPLGRA------FRLAVGSLPLPRVRP-FSSSAAAESLGFHQQQRSPLEGAAVVGRGAGTREGEGE------GDFQAAREGRDWWKDEVALEEEGLEQQAXXXXXXXXXXXXXXXXXXXXXXXXX---------------GRGRRVSRERLVEEALELTFRLIMSGDAALDALKVDENLVSAIKRVAEGGGQKLQYDSRGVLKRAGPPLTHSQLLANKCLAALGAHQWRPKTRGQKGVRILCFDGGGTRGVLTLALLKHLEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQAFYDEVGWMKILNSILGDMLMVDSAQDPLRPLIICPSTTISSNPAKVMLWRNYNYPPGHQGRYHGSFRHMVRQAIRATTAAPTFFPPLMINGALYSDGALLCNNPSAVAFHEAKHAFPGVPIEMIVSIGTGCFFEEKREFLEPAGLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMTDMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAEKMLPD 1352
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: A0A6H5KXR6_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR6_9PHAE)

HSP 1 Score: 1050 bits (2715), Expect = 0.000e+0
Identity = 643/959 (67.05%), Postives = 700/959 (72.99%), Query Frame = 1 
Query:  463 ARAAAPTHFIPKIAPPPNAWKILSHKAAVDLPSKQQQQKSSDRSENRSSGVSLSTAPSXXXXXXXXXXXXXSRSESRDDATQRRAPGVSVSGNGGDVGNEDEXXXXXFRDFGDVPLSVTSIPEPPDMEITINRSSGTPANAQTRPAAAAAAKAAADSANVLEEWVDGEPVEVHHGRARMASSQQPHRPADLAGASGEMKLVEMACLAGLSSTAGKSAGRIMHEELGGFAHLLRGLREDVRPSLRRRVLQAISTVVDSDPTLAPYLL---DLDHGQDSGAALRKXXXXXXXXXXXXXXXXXXXXNKVKTNTKKR---------------GKGDKNRDRGGRKRSTPATAAAPTSPGAVVGEDDLLERITAILGYHGVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVRRAGGVFRALVRRFPVPQVRPPFSSTVGSRVAGFAAATMEXXXXXXXXXXXXXXXXXXXXXXXXXXGDQEAAREGRDWWKDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGRRVSRERLVEEALELTFRLIMSGDVALDALKVDGNLVAALRRVAEGGGQRLQYDAKGVLRRTGPRLSHSQHLAYKCLASLGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPGGGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAERMLPD 3285
            A A A THFIPK APPPNAWKILS K+ V+ P      K+SD+S +RS G S +   S              + E           G S  G+  D+ ++D      FRDFGD+PLSVTSIP+PPDMEITINRSSGTPANA+TRPAAAAAAKAAADS NVLEEWVDGEPV+VHHGR  M SS +P RP  L+G SGEMKLVEMACL GLSS AGKSAGRIM EELG F HLLRGLR DVRPSL+RRVLQAISTV+DSDP+LAP LL   DLDH  D       XXXXXXXXXXXXXXXXXXXX                         G GD                 +P+S G  VGEDDLLERITAILGYH VA   XXXXXXXXXXXXXX                 + RA   FR +V   P+P+VRP FSS   +  + F                                GD + AREGRDWWKDE                        XXXXXXXXXXX                 G+GRRVSRERLVEEALELTFRL+MSGD ALD LKV+ +LV+A++RVAEGGGQ+LQYD++GVL+R GP L+HSQ LA KCLA+LGAH+WRPKM+GQKG+RILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVK FPV ECE+MYD+LINKIFIKHPGGGMKLALKQAFYDEVGWMKIL+SIL D LM+DSAQDPLRPLI+CPST ISSNPA+VMLWRNYNYPPGHQGRY+GSFR+MVRQAIRATTAAPTFF PLMI+GALYSDGALLCNNPSAVAFHEAKH FPGVPIEMIVS+GTGCFFEEK+EFLEPA LGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRM DMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAE+MLPD
Sbjct:  339 AAATAHTHFIPKFAPPPNAWKILSSKSPVETP------KASDQSGDRSPGGSPALPSSSSVPYGSGGVVGQDKRE-----------GGSSEGSAVDIDDDDGEEHDEFRDFGDLPLSVTSIPKPPDMEITINRSSGTPANAETRPAAAAAAKAAADSDNVLEEWVDGEPVQVHHGR--MTSSWKPTRPDGLSGTSGEMKLVEMACLTGLSSRAGKSAGRIMLEELG-FGHLLRGLRGDVRPSLQRRVLQAISTVIDSDPSLAPILLGLDDLDHPDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGAGD----------------GSPSSLGPAVGEDDLLERITAILGYHMVAGGGXXXXXXXXXXXXXXVPGGVEASVAPGGGDGPLGRA---FRLVVGSLPLPRVRP-FSSAAAAESSDFQQQR------PPLEGAAVVGRGNGTREEGEGEGDYQVAREGRDWWKDEVALEEEGLEQQAATQAAAMFPGGSXXXXXXXXXXXWVWWW------------GKGRRVSRERLVEEALELTFRLVMSGDAALDTLKVNEDLVSAIKRVAEGGGQKLQYDSRGVLKRAGPPLTHSQLLANKCLAALGAHQWRPKMRGQKGVRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQAFYDEVGWMKILNSILGDMLMVDSAQDPLRPLIICPSTTISSNPAKVMLWRNYNYPPGHQGRYHGSFRHMVRQAIRATTAAPTFFPPLMINGALYSDGALLCNNPSAVAFHEAKHAFPGVPIEMIVSIGTGCFFEEKREFLEPAGLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMTDMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAEKMLPD 1239
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: A0A835YX58_9STRA (Calcium-independent phospholipase-like protein A2-gamma, C terminal part n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX58_9STRA)

HSP 1 Score: 449 bits (1156), Expect = 6.140e-142
Identity = 211/324 (65.12%), Postives = 266/324 (82.10%), Query Frame = 1 
Query: 2293 LGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPGGGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFETPENQARLQEM 3264
            LGA EW PK +GQKG+RILCFDGGGTRGVLT+A+LK +   +G R+P +VFD++VGTSTG I+A LAG++CFP+ +CE MYD LI  IF K P GG+KLALKQAFYDE  WM IL SIL D+ MID A  PL P +  PST+IS NP+++ LWRNYNYP GH GRY GS+R+ VR+++RATTAAPTFF+PL+I+G LYSDGAL+ NNP+AVA HEAKH++PGVP+E++VSLGTGCFFE+ ++F +PA +GWDGI+NQ+I+SATETE T DI+SDL+P +Q+FRFNPRM DM IDE R ERL +LK L++ YFE P  +A+L E+
Sbjct:    2 LGATEWVPKTRGQKGLRILCFDGGGTRGVLTIAMLKRIMAEVG-REPAQVFDIVVGTSTGAIVAALAGLECFPLAQCEAMYDALIKDIFQKSPSGGVKLALKQAFYDEENWMAILRSILGDKAMIDYADTPLAPKVAFPSTVISVNPSKLWLWRNYNYPTGHAGRYSGSYRHTVRESLRATTAAPTFFSPLLINGTLYSDGALMANNPTAVALHEAKHIYPGVPVELVVSLGTGCFFEQARDFSDPA-VGWDGIVNQLISSATETENTNDIMSDLVPAQQYFRFNPRMTDMAIDETRPERLAFLKELSDRYFEEPATRAQLDEL 323
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: A0A0G4F2X6_VITBC (PNPLA domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F2X6_VITBC)

HSP 1 Score: 358 bits (919), Expect = 3.570e-97
Identity = 206/432 (47.69%), Postives = 274/432 (63.43%), Query Frame = 1 
Query: 2089 ALELTFRLIMSGDVALDALKVDGNLVAALRRV-AEGGGQ------------RLQYDAKGVLRRTGPRLSHSQHLAYKCLASLGAH-EWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPG--GGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNYNYPP-GHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFET-PENQARLQEMAE---RMLPDA*RGRTSNVT*P 3321
            AL L   + +S D  + AL+ D  +   LRR+  + GG             + Q      L+R   R+      A K LA++G + +W P++ GQ+G+RILC DGGGTRGVLT+A+LK +   +G R+ HEVFD+I GTSTGGIIA L GV+   V E E +YDNLI  IF+K PG   G +L +KQA+YDE  W  IL++ L D  MID+A DP  P   C ST++S+NP+ ++LWRNYNYPP G QG+Y GSFR   R A+RATTAAPTFF  L +DG  Y DGALL NNP+A+A  EAK +FP  PIE IVS+GTG F ++         +GWDGI+NQ++ SAT TE T +++S+ LP +++FRFNP++E   IDE    +LD +K  A  YFE  P+N+ RLQ++AE     LP    G  + VT P
Sbjct: 1329 ALHLLCTMALSSDRVIWALQTDSRVAPLLRRILVQAGGTNPSAGVVKSRWAKWQGKDDKPLQRDLERI----RTANKLLAAMGCNNDWHPRVPGQRGLRILCLDGGGTRGVLTIAILKFIVAVMG-REVHEVFDIICGTSTGGIIAMLLGVQKSSVNEVEVLYDNLIKDIFVKDPGPISGARLVVKQAYYDETAWELILENTLGDIRMIDTAADPDVPKTFCLSTMVSANPSSLILWRNYNYPPNGRQGKYAGSFRIRCRDALRATTAAPTFFPALRLDGEAYGDGALLANNPTAIALAEAKALFPDTPIEAIVSVGTGRFPQQSYG----GRVGWDGIVNQLVCSATNTEGTHEMLSEFLPEDKYFRFNPKIEMWAIDETDPGKLDQMKRFAARYFEDIPDNRRRLQQLAELCRAKLPPGSGGIRAGVTLP 1751
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: A0A4D9CW07_9STRA (PNPLA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW07_9STRA)

HSP 1 Score: 330 bits (845), Expect = 1.200e-95
Identity = 178/402 (44.28%), Postives = 257/402 (63.93%), Query Frame = 1 
Query: 2074 RLVEEALELTFRLIMSGDVALDALKVDGNLVAALRRVAEGGGQRLQYDAKGVLRRTGPRLSHSQHLAYKCLASLGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPG--GGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPL---RPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPAD-LGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFETPENQARLQE 3261
            R    A+ L + + ++ + A++AL+ +G L+ AL+++     +RL  +        GP   +  H  +K L+ +G HEW+P+  GQKG+RIL  DGGGTRGV+T+ALL H+ +A G ++ HE+FD+I GTSTGGI+A L  VK   V+E  ++YD LI KIF K P       L L+ A Y+E  W  +L  ++ + L+ID+   P     P     S+++S NPA++ +WRNYNY    + RY G FR  VR+AIRATTAAPT+F PL+  G ++SDGALL NNP+A+A HEAK ++P VPIE +VS+GTG   E +     P +  GW  I NQ+I SAT TE   D ++D LP ++++RFNP +E++ IDE+R E+L +LK  A EYF+ P N+ RL +
Sbjct:  131 RCQRAAIYLLYTMCLASERAIEALQTEGRLIPALQQILR---ERLFEE--------GPMSVY--HTIHKLLSIVGYHEWKPRQAGQKGLRILSLDGGGTRGVMTIALLSHLIEATG-KEVHELFDIICGTSTGGILAALFAVKATKVKEAGRLYDELIKKIFNKSPAPLAYSNLVLRTAQYNENVWEDVLKVLIGETLLIDTMGGPQGLNTPKFFVLSSVLSCNPAKLFMWRNYNYRRAQRSRYEGDFRAKVREAIRATTAAPTYFYPLVRGGMVHSDGALLANNPTAIAIHEAKIIYPNVPIEAVVSVGTGNVLEPQ-----PVEGFGWAPIFNQIINSATNTEAVHDSLADFLPQDRYYRFNPNIENVSIDEIRPEKLAYLKATAKEYFQDPRNKERLDQ 513
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: A0A7S2R4X2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4X2_9STRA)

HSP 1 Score: 307 bits (786), Expect = 8.930e-87
Identity = 153/377 (40.58%), Postives = 235/377 (62.33%), Query Frame = 1 
Query: 2134 LDALKVDGNLVAALRRVAEGGGQRLQYDAK----------GVLRRTGPRLSHSQHLAYKCLASLGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHP-GGGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFE 3231
            L  L+    L + L ++ +    RL  + K          G +   G + S  + +    +A LG  +WRP+    KG+R+LC DGGGTRGVLT+A+L+ + +A+G +  HE+FD++ GTSTG IIA L G+K  P+ EC K+YD L+++IF+K+   G +KL ++QA+YDE  W +IL  +  +Q MIDS        ++C +T+IS +PA++ + RN+NY    + RY G +R+ VR A+R+TTAAPT F PL+++G  Y DGA   NNP+AVA++EA+ +FP V +E+++S+G+G F E + E  E    GWD ++NQ++ S+T+T    + +   LP + +FRFNPRM  +PIDE     L   K  A E+F+
Sbjct:  147 LPLLQGSDRLASTLDKMGDAAHSRLMQERKRRDDPTYGRYGGMTVDGSQFSQDELVNMNAMA-LGVRKWRPRSPHHKGVRVLCLDGGGTRGVLTIAVLQQISRAIG-KDIHEIFDVVAGTSTGAIIACLIGLKHTPIDECAKLYDQLVSEIFVKNVISGPIKLGIRQAYYDEKNWERILLRLCGEQRMIDSTSSATSIAVMCLATVISVDPAKMFVARNFNYARSQESRYLGDYRWQVRHALRSTTAAPTIFTPLVLNGVTYCDGAFFANNPTAVAYYEAQKLFPDVEVELVLSIGSGTFHEVEMESYE---FGWDKLVNQLVESSTDTHRVHETLESFLPSDMYFRFNPRMRCIPIDETNPSALQEHKIAAREFFQ 518
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: K8Z805_NANGC (Calcium-independent phospholipase a2-gamma n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z805_NANGC)

HSP 1 Score: 313 bits (801), Expect = 4.380e-85
Identity = 179/437 (40.96%), Postives = 260/437 (59.50%), Query Frame = 1 
Query: 2074 RLVEEALELTFRLIMSGDVALDALKVDGNLVAALRRVAEGGGQRLQYDAKGVLRRTGPRLSHSQHLAYKCLASLGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPG--GGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPL---RPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPAD-LGWDGIINQVI--------------------------ASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEV--RKERLDWLKTLANEYFETPENQARLQEMAERMLP 3282
            R    A+ L + + ++ + A++AL+ +G L+ AL+++     +RL  +        GP   +  H  +K L+ +G HEW+P+  GQKG+RIL  DGGGTRGV+T+ALL H+ +A G ++ HE+FD+I G STGGI+A L  VK   V+E  ++YD LI KIF K P       L L+ A Y+E  W  +L  ++ + L+ID+   P     P     S+++S NPA++ +WRNYNY    + RY G FR  VR+AIRATTAAPT+F PL+  G ++SDGALL NNP+A+A HEAK ++P VPIE +VS+GTG   E +     P +  GW  I NQ+I                           SAT TE   D ++D LP ++++RFNP +E++ IDEV  R E+L +LK  A EYF+ P N+ RL ++ + + P
Sbjct:  501 RCQRAAIYLLYTMCLASERAIEALQTEGRLIPALQQILR---ERLFEE--------GPMSVY--HTIHKLLSIVGYHEWKPRQAGQKGLRILSLDGGGTRGVMTIALLSHLIEATG-KEVHELFDIICGNSTGGILAALFAVKATKVKEAGRLYDELIKKIFNKSPAPLAYSNLVLRTAQYNENVWEDVLKVLIGETLLIDTMGGPQGLNTPKFFVLSSVLSCNPAKLFMWRNYNYRRAQRSRYEGDFRAKVREAIRATTAAPTYFYPLVRGGMVHSDGALLANNPTAIAIHEAKIIYPNVPIEAVVSVGTGNVLEPQ-----PVEGFGWAPIFNQIINSCHTSITVNFTPFPFFILPRSLRFSVSATNTEAVHDSLADFLPQDRYYRFNPNIENVSIDEVGIRPEKLAYLKATAKEYFQDPRNKERLDQLIKLLQP 918
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: D8LL86_ECTSI (Similar to Calcium-independent phospholipase A2-gamma, C terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL86_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 5.650e-85
Identity = 159/344 (46.22%), Postives = 216/344 (62.79%), Query Frame = 1 
Query: 2293 LGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPGGGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAERMLPDA*RGRTSNVT*PA 3324
            LG H W P+  GQKG+RIL  DGGGTRGVLT+ALL+ V K    +  HEVFD+I GTSTGGI+A L   +   +     MYD+LI KIF K      KL L+QA Y    W  IL+ IL D+ MID+   P  P +V  STI++ +P  +MLWRNY Y P  +  Y G +R  +R+ +RATTAAP+FF PL+    +Y+DGA L NNP+++A  EAK ++P VPIE ++S+GTG +   +KE      + W  ++NQ++ SAT+TE    ++   LP +Q+FRFN  ++   IDE R E+LD LK LA EY + PE +AR +E+  R+L    RG  SN   P+
Sbjct:    2 LGVHHWTPRQPGQKGLRILSLDGGGTRGVLTIALLREVLKGFD-KDVHEVFDVICGTSTGGILAMLFASEKQSLASATTMYDSLIVKIFKKDLLANAKLVLQQAQYSSTDWEAILEDILGDRRMIDTMTLPNNPKVVICSTIMNVDPLEMMLWRNYGYRPEQEPPYKGDYRRKMRECVRATTAAPSFFTPLVDGKMMYADGAFLANNPTSIALTEAKLLYPNVPIECVLSVGTGFYVPTRKE----PGMSWGTVLNQLVNSATDTEGVDSMLKTFLPRDQYFRFNAPIQPFDIDETRVEKLDELKALAKEYTQRPEIKARAEEL-RRLL----RGENSNSGWPS 335
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: A0A4D9DA09_9STRA (PNPLA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA09_9STRA)

HSP 1 Score: 296 bits (758), Expect = 1.830e-78
Identity = 166/394 (42.13%), Postives = 235/394 (59.64%), Query Frame = 1 
Query: 2089 ALELTFRLIMSGDVALDALKVDGNLVAALRRVAEGGGQRLQYDAKGVLRRTGPRLSHSQHLAYKCLASLGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPG-GGMKLALKQAFYDEVGWMKILDSILADQLMIDS-AQDPLRPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFETPENQARLQEM 3264
            A+E+ F+L+++ D A+   + DG L  AL+          Q  A G+     P  +      +K LA+LG +EWRP+  GQ+G+RIL FDGGGTRGVL++ALLK V K +G +   E FD+I GTSTGGI+A L G++   V E E +YD L++KIF   P     KL L+ ++YDEV W ++L  +L D LMIDS  + PL P + C S  + +NPA + +WR                         ATTAAPTFF+PL  + A Y DGA L NNP+AVA +E + ++PGVP+E +VS+GTG   + +K        GW+GI+N +I  AT TE+T   +S  LP  +++RFNP+ E  P+DE + ERL  +K++A EYF   EN+ R+ E+
Sbjct:  880 AVEVLFQLVLASDKAISLAQKDGRLWNALQ----------QMTADGMYAAGSPTFA----TCHKLLAALGHNEWRPRQPGQRGLRILSFDGGGTRGVLSVALLKQVMKRVG-KDVFETFDVICGTSTGGILAVLFGIERRTVDEAEALYDKLVSKIFASSPLIQTTKLLLRTSYYDEVVWEQVLQDMLGDDLMIDSMGEGPLSPKVFCASLSLKTNPASLYIWR-------------------------ATTAAPTFFSPLEREDAKYCDGAFLANNPTAVALNEVRTLYPGVPVECVVSIGTGVHVDNRKA---DGGYGWEGIVNDLINCATNTEVTHQTLSAFLPKSKYYRFNPQTEFFPLDETKPERLARMKSIAREYFWQSENKERMNEL 1230
[Close]
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Match: A0A6H5KSL4_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 4.800e-78
Identity = 167/366 (45.63%), Postives = 226/366 (61.75%), Query Frame = 1 
Query: 2272 AYKCLASLGAHEWRPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVGTSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPGGGMKLALKQAFYDEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNYNYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCNNPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIINQVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKTLANEYFETPENQARLQEMAERMLPDA*RGRTSNVT*PAQVSVSSSTSGTGSGD 3369
            A K L+ LG H W P+  GQKG+RIL  DGGGTRGVLT+ALL+ V K L  +  HEVFD+I GTSTGGI+A L   +   +     +YD+LI KIF K      KL L+QA Y    W  IL+ IL D+ MID+   P  P +V  STI++ +P  +MLWRNY Y P  +  Y G +R  +R+ +RATTAAP+FF PL+    +Y+DGA L NNP+++A  EAK ++P VPIE ++S+GTG +   +KE      + W  ++NQ++ SAT+TE    ++   LP +Q+FRFN  ++   IDE R E+LD LK LA EY + P+ +AR +E+  R+L    RG  SN   P      S   G GSGD
Sbjct: 1228 ASKLLSMLGVHHWTPRQPGQKGLRILSLDGGGTRGVLTIALLREVLKGLD-KDVHEVFDVICGTSTGGILAMLFASEKQSLASATTLYDSLIVKIFKKDLLANAKLVLQQAQYSSTDWEAILEDILGDRRMIDTMTLPNNPKVVICSTIMNVDPLEMMLWRNYGYRPEQEPPYKGDYRRKMRECVRATTAAPSFFTPLVDGNMMYADGAFLANNPTSIALTEAKLLYPNVPIECVLSVGTGFYVPTRKE----PGMSWGTVLNQLVNSATDTEGVDSMLKTFLPRDQYFRFNAPIQPFDIDETRVEKLDELKALAKEYTQRPDIKARAEEL-RRLL----RGENSNSGWP------SIGRGGGSGD 1577
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE8_ECTSI0.000e+068.23Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5KXR6_9PHAE0.000e+067.05PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YX58_9STRA6.140e-14265.12Calcium-independent phospholipase-like protein A2-... [more]
A0A0G4F2X6_VITBC3.570e-9747.69PNPLA domain-containing protein n=1 Tax=Vitrella b... [more]
A0A4D9CW07_9STRA1.200e-9544.28PNPLA domain-containing protein n=1 Tax=Nannochlor... [more]
A0A7S2R4X2_9STRA8.930e-8740.58Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K8Z805_NANGC4.380e-8540.96Calcium-independent phospholipase a2-gamma n=2 Tax... [more]
D8LL86_ECTSI5.650e-8546.22Similar to Calcium-independent phospholipase A2-ga... [more]
A0A4D9DA09_9STRA1.830e-7842.13PNPLA domain-containing protein n=2 Tax=Monodopsid... [more]
A0A6H5KSL4_9PHAE4.800e-7845.63PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:213323..226874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score1066.6
Seed ortholog evalue7.2e-309
Seed eggNOG ortholog2880.D7FNE8
KEGG koko:K16815
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phosphatidylethanolamine catabolic process
EggNOG OGsKOG4231@1,KOG4231@2759
Ec32 ortholog descriptionPatatin/Phospholipase A2-related
Ec32 orthologEc-22_001470.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons18
Model size4834
Cds size3081
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16973.1prot_C-linearis_contig95.16973.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 213533..225276 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930812.114214-UTR-C-linearis_contig95:213322..2135321622930812.114214-UTR-C-linearis_contig95:213322..213532Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 213323..213532 +
1690881262.7285662-UTR-C-linearis_contig95:213322..2135321690881262.7285662-UTR-C-linearis_contig95:213322..213532Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 213323..213532 +
1622930812.4267874-UTR-C-linearis_contig95:225276..2258711622930812.4267874-UTR-C-linearis_contig95:225276..225871Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 225277..225871 +
1690881262.9300685-UTR-C-linearis_contig95:225276..2258711690881262.9300685-UTR-C-linearis_contig95:225276..225871Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 225277..225871 +
1622930812.4482632-UTR-C-linearis_contig95:225926..2268741622930812.4482632-UTR-C-linearis_contig95:225926..226874Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 225927..226874 +
1690881262.9396522-UTR-C-linearis_contig95:225926..2268741690881262.9396522-UTR-C-linearis_contig95:225926..226874Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 225927..226874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930812.134173-CDS-C-linearis_contig95:213532..2138201622930812.134173-CDS-C-linearis_contig95:213532..213820Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 213533..213820 +
1690881262.7446654-CDS-C-linearis_contig95:213532..2138201690881262.7446654-CDS-C-linearis_contig95:213532..213820Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 213533..213820 +
1622930812.1541634-CDS-C-linearis_contig95:214064..2141331622930812.1541634-CDS-C-linearis_contig95:214064..214133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 214065..214133 +
1690881262.7535205-CDS-C-linearis_contig95:214064..2141331690881262.7535205-CDS-C-linearis_contig95:214064..214133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 214065..214133 +
1622930812.1732144-CDS-C-linearis_contig95:214460..2147561622930812.1732144-CDS-C-linearis_contig95:214460..214756Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 214461..214756 +
1690881262.7630265-CDS-C-linearis_contig95:214460..2147561690881262.7630265-CDS-C-linearis_contig95:214460..214756Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 214461..214756 +
1622930812.1911101-CDS-C-linearis_contig95:215371..2154971622930812.1911101-CDS-C-linearis_contig95:215371..215497Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 215372..215497 +
1690881262.7724662-CDS-C-linearis_contig95:215371..2154971690881262.7724662-CDS-C-linearis_contig95:215371..215497Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 215372..215497 +
1622930812.2081637-CDS-C-linearis_contig95:215997..2161421622930812.2081637-CDS-C-linearis_contig95:215997..216142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 215998..216142 +
1690881262.782725-CDS-C-linearis_contig95:215997..2161421690881262.782725-CDS-C-linearis_contig95:215997..216142Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 215998..216142 +
1622930812.220763-CDS-C-linearis_contig95:216832..2175471622930812.220763-CDS-C-linearis_contig95:216832..217547Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 216833..217547 +
1690881262.7945995-CDS-C-linearis_contig95:216832..2175471690881262.7945995-CDS-C-linearis_contig95:216832..217547Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 216833..217547 +
1622930812.2362392-CDS-C-linearis_contig95:217616..2176571622930812.2362392-CDS-C-linearis_contig95:217616..217657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 217617..217657 +
1690881262.808797-CDS-C-linearis_contig95:217616..2176571690881262.808797-CDS-C-linearis_contig95:217616..217657Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 217617..217657 +
1622930812.2533705-CDS-C-linearis_contig95:217965..2182231622930812.2533705-CDS-C-linearis_contig95:217965..218223Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 217966..218223 +
1690881262.8190892-CDS-C-linearis_contig95:217965..2182231690881262.8190892-CDS-C-linearis_contig95:217965..218223Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 217966..218223 +
1622930812.2780137-CDS-C-linearis_contig95:218755..2188301622930812.2780137-CDS-C-linearis_contig95:218755..218830Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 218756..218830 +
1690881262.8323395-CDS-C-linearis_contig95:218755..2188301690881262.8323395-CDS-C-linearis_contig95:218755..218830Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 218756..218830 +
1622930812.2950616-CDS-C-linearis_contig95:219243..2194321622930812.2950616-CDS-C-linearis_contig95:219243..219432Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 219244..219432 +
1690881262.8426232-CDS-C-linearis_contig95:219243..2194321690881262.8426232-CDS-C-linearis_contig95:219243..219432Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 219244..219432 +
1622930812.3148372-CDS-C-linearis_contig95:219780..2198431622930812.3148372-CDS-C-linearis_contig95:219780..219843Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 219781..219843 +
1690881262.8520696-CDS-C-linearis_contig95:219780..2198431690881262.8520696-CDS-C-linearis_contig95:219780..219843Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 219781..219843 +
1622930812.3304565-CDS-C-linearis_contig95:220411..2205371622930812.3304565-CDS-C-linearis_contig95:220411..220537Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 220412..220537 +
1690881262.8678105-CDS-C-linearis_contig95:220411..2205371690881262.8678105-CDS-C-linearis_contig95:220411..220537Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 220412..220537 +
1622930812.3441045-CDS-C-linearis_contig95:220793..2209781622930812.3441045-CDS-C-linearis_contig95:220793..220978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 220794..220978 +
1690881262.8791642-CDS-C-linearis_contig95:220793..2209781690881262.8791642-CDS-C-linearis_contig95:220793..220978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 220794..220978 +
1622930812.356311-CDS-C-linearis_contig95:221629..2217861622930812.356311-CDS-C-linearis_contig95:221629..221786Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 221630..221786 +
1690881262.8884437-CDS-C-linearis_contig95:221629..2217861690881262.8884437-CDS-C-linearis_contig95:221629..221786Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 221630..221786 +
1622930812.375134-CDS-C-linearis_contig95:222117..2222371622930812.375134-CDS-C-linearis_contig95:222117..222237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 222118..222237 +
1690881262.8976662-CDS-C-linearis_contig95:222117..2222371690881262.8976662-CDS-C-linearis_contig95:222117..222237Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 222118..222237 +
1622930812.391156-CDS-C-linearis_contig95:222697..2228651622930812.391156-CDS-C-linearis_contig95:222697..222865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 222698..222865 +
1690881262.9094317-CDS-C-linearis_contig95:222697..2228651690881262.9094317-CDS-C-linearis_contig95:222697..222865Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 222698..222865 +
1622930812.407815-CDS-C-linearis_contig95:225216..2252761622930812.407815-CDS-C-linearis_contig95:225216..225276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 225217..225276 +
1690881262.9206042-CDS-C-linearis_contig95:225216..2252761690881262.9206042-CDS-C-linearis_contig95:225216..225276Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 225217..225276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16973.1

>prot_C-linearis_contig95.16973.1 ID=prot_C-linearis_contig95.16973.1|Name=mRNA_C-linearis_contig95.16973.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1027bp
MPAASSAQHPLGSPKLRADDQPQGERNPAKGPVKVKVNAKVKAGAKESAG
AAAAAAVTVERGEGNSAREGGALSTDGAAGAAAGARAAAPTHFIPKIAPP
PNAWKILSHKAAVDLPSKQQQQKSSDRSENRSSGVSLSTAPSGSSNNNNG
GGGPPSRSESRDDATQRRAPGVSVSGNGGDVGNEDEDEEDEFRDFGDVPL
SVTSIPEPPDMEITINRSSGTPANAQTRPAAAAAAKAAADSANVLEEWVD
GEPVEVHHGRARMASSQQPHRPADLAGASGEMKLVEMACLAGLSSTAGKS
AGRIMHEELGGFAHLLRGLREDVRPSLRRRVLQAISTVVDSDPTLAPYLL
DLDHGQDSGAALRKKQAAAAAAAAAGGGAGGGSSNKVKTNTKKRGKGDKN
RDRGGRKRSTPATAAAPTSPGAVVGEDDLLERITAILGYHGVAGGGGGGG
SGDAGEEEGSGGRGGREGRGGGRGGSRVRRAGGVFRALVRRFPVPQVRPP
FSSTVGSRVAGFAAATMEQQQQQQLEQQGVGVSEAAAAAAATVSGDQEAA
REGRDWWKDEVALEEEGFEQQAVAAAAAAATLTAAGTRAAGRARRGRGPP
VAGGSSGWVWWWGRGRRVSRERLVEEALELTFRLIMSGDVALDALKVDGN
LVAALRRVAEGGGQRLQYDAKGVLRRTGPRLSHSQHLAYKCLASLGAHEW
RPKMKGQKGIRILCFDGGGTRGVLTLALLKHVEKALGGRQPHEVFDMIVG
TSTGGIIAGLAGVKCFPVQECEKMYDNLINKIFIKHPGGGMKLALKQAFY
DEVGWMKILDSILADQLMIDSAQDPLRPLIVCPSTIISSNPARVMLWRNY
NYPPGHQGRYYGSFRYMVRQAIRATTAAPTFFAPLMIDGALYSDGALLCN
NPSAVAFHEAKHVFPGVPIEMIVSLGTGCFFEEKKEFLEPADLGWDGIIN
QVIASATETEITTDIVSDLLPPEQFFRFNPRMEDMPIDEVRKERLDWLKT
LANEYFETPENQARLQEMAERMLPDA*
back to top

mRNA from alignment at C-linearis_contig95:213323..226874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16973.1 ID=mRNA_C-linearis_contig95.16973.1|Name=mRNA_C-linearis_contig95.16973.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13552bp|location=Sequence derived from alignment at C-linearis_contig95:213323..226874+ (Chordaria linearis ClinC8C monoicous)
CGCCGCGGTACTGCTAGAGAACCGATTCAAAGCAGCAGCAGCAGCGTCTC
GTCATTACTGCCCGCACCCCACCGAATCGACGGGAAGAGCAAGAGCAAGC
CGGCCGACAAGCGAGGCAAGCAAGGCAAGAAGGCCGAGGACGCCGGGGGC
AAGCGTAGACCTCCTTCCGCCCCGCCGCGGGCCTCGTCAAGGGACCAAAC
GCCCCCGTCCATGCCCGCGGCATCCTCGGCACAACACCCCCTCGGGTCTC
CAAAGCTCAGGGCTGATGACCAGCCGCAAGGCGAGAGAAATCCGGCAAAG
GGGCCGGTTAAGGTTAAGGTTAACGCTAAGGTTAAGGCTGGAGCGAAGGA
GTCGGCAGGGGCGGCGGCGGCGGCGGCAGTGACGGTCGAACGTGGCGAGG
GTAACAGCGCTCGGGAGGGAGGAGCCTTGTCGACTGATGGCGCGGCTGGG
GCTGCGGCGGGTGCCCGTGCCGCCGCTCCGACGCATTTTATTCCCAAGGT
TCGGATGTTGCGTGTGGGTGTACGAGTAGGTGTCCAAGTGGGGTCGGGGG
GGTGTGGTGCGCTGGTGTCTGCGTCTCCCGGCGTTCTTTCAACACGATTG
CAAGGTCGTTGACCCGGGCGCAGACAGCGGTCTATGTCGCGACCCCACCC
CGACGGCATCCCACAGCTTCTCTTCCCCTCCCCCATCCTGACCGAGTATC
GCCCACCCCCAACCTTGCAACCTTCTCCATATCGTCCCGCAGATCGCGCC
GCCTCCGAACGCGTGGAAAATCCTCTCCCACAAGGCTGCCGTGGACCTCC
CATCAAAGCAGGTGTGCGAGCCGCTTTTGATGCCCGCTTTTGATGCCGCA
AGGGCTTATTTCGCTCCTTCCCACAAGGATACAAACACTGCTGCGTACAT
ACAAAGTTTCAAACCTTCCCGTGCGTCTAGTTAGGGCCGGTTTAACTTTG
TCGACAGCGCGTGGAGAGGTGGGGCCGTTTGGATTGCTTTCCGATGTTAA
GGGGGTAAGTAGCACGCGGAGAGCTAAGTACGGAGGCCTTTTTGAATGTG
GTATTCTACTGCTCGTCCCTCGCGTCATGGGAGACCTCATGCAACCAAAA
TTTCGGGTCCCTCTTGTTTTTACGTGAAACGCTAGCAGCAGCAGCAGAAG
TCCTCGGACCGATCTGAGAACCGTTCTTCTGGGGTCTCACTCTCTACTGC
GCCTAGCGGCAGCAGCAACAACAATAACGGCGGCGGCGGGCCCCCCAGCC
GTTCGGAGTCGCGGGATGATGCCACCCAACGCCGTGCCCCCGGTGTCTCT
GTCTCCGGAAACGGCGGAGATGTCGGAAATGAGGATGAGGACGAGGAAGA
CGAGTTCCGTGATTTCGGCGACGTGCCGCTGTCGGTGACGAGCATCCCGG
AGCCTCCAGACATGGAAATCACCATCAACCGGAGGTAGGTACGCTTCGGT
TTTTTTGTGCGGGTGTCTTTTTGGGGTCCCACGCGTTGCTCGTGCTCTCG
TGCCAGTGTTTTTTTTTTTTTTGTGGATTGGATTGTCGGGCAGCGATGAA
GATGATGAGGGTATACAAGAAGCCCCGACCAGCGGTCTTCGCCGCGATAC
TTTAGATGGAACGGACACTGAAGAATCTTGGGGCGTTCTTCGGGGATACC
GATTTAGTGCGCGTGCAGGGAGGGAAAGGCAAAAAGAACAGGGGTGAAGA
AAAAAAGAGGTGTCAGTACAGAGTATTGTTTTCCCCACCTCTTTCCGCTT
TGCAAAGGGTTGTGGGGTCAATGAGCACGACGGCGGGATTGAGCTTTTTT
AAGACGCAAAGAAAACGGTGCAGAGCAATGCCTAGGCGAATAACTATAAA
AGTTAGGCAAATTAGTCTAGATGGCGGGAAAACCTTTAACCTTTGATCGG
ACACGAAAAATATTTTCGTGCCAGGTATGTACACTCTGTCTGTCGTCCCT
GCCGTGTTTCAACCCATTCCTATCCCGCCCCAACGCCTTGTGTTTCGGCG
GTGATAAACCGCACCGTGTTCTCCAACGCCGTTTCATGTTTTCGTCCAGT
TCGGGGACACCTGCGAACGCGCAGACCCGGCCCGCGGCAGCCGCTGCCGC
CAAGGCCGCCGCCGACTCGGCCAACGTCCTGGAGGAGTGGGTAGACGGGG
AGCCGGTGGAGGTGCATCATGGCCGGTGCGGGTTGTCGCGTTTTGTTTGA
GCTCAGAGCGCCACCAAATCTGTGCCCAACGTGTAAAGAAAGAAGTACTA
CATTATAGCGGTGCTGTTGTAATAGACACGCTATTTTACCCCCCTCCCCG
TCCCTGGCTAGAATATTCGAAGGCCTTAGAATGACGATTTTTTGCGTTGT
TTCTTGTTTTTGTTGCGTCTCTCTTTCACCTCCGAACGGCTGGGGGCCCC
GCCGCTGCCGTTATTATTGTTGCTGCTGCCGCTAGGCGCAGTAGAGGGTG
AGACCCCAGAAGAACGGTTCTCAGATCGGTCCGAGGACTTCTGCTGCTGC
TGCTAGCGTTTCACGTAAAAACAAGAGGGACCCGAAATTTTGATTGCATG
AGGTCTCCCATGACGCGAGGGACGAGCAGTAGAAGACCACGTTCAAAGGT
GGGGCCGTTTGGATTGCTTTTCGCCTCTTTTCTTCTTATTTGTTGTTGTT
GCCGCGTCTCTCTTTCACCTTCCAGGGCTCGGATGGCGTCCAGCCAGCAG
CCGCACCGCCCCGCCGACCTCGCCGGCGCTTCCGGGGAGATGAAGCTGGT
GGAGATGGCCTGCCTGGCGGGACTGTCATCCACGGCGGGCAAGAGCGCCG
GCCGCATCATGCACGAGGAGGTGTGCCTAAAGTGTGTGCCTAAAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTAGTGTGTACGAAGCACGTTGTAGGAA
GGGTGCCTGAAAATGACGCATGCCCTGACTTTCATTGAATTTTGTTGCTT
GAGGAACGTTTATGTTTTATTTTTTTCAGGAAACCGTGCACTGTAACACT
GCTCTAGAGTGGGCAAGAGCGCCGGCCGCATCATGCACGAGGAGGTGTGG
CTAAAGTGTGTGTGTGTGTGTGTGGGTGTAGTGTGTACGAAGCGCGTTGT
AGGAAGGGTGCCTGAAAATGACGCATGCCCTGACTTTCATTGAATTTTGT
TCCTTGAGGAACGTTTATGTTTTATTTTTTTCAGGAAACCGTGCGCTGCT
GTAACACTGCTATAGAGATGAAATAAGGCAGATGTTCTGGACGGGTTCCT
GCCCAGCGTCTACAAACCTGTAGGGACGTCTTCGCTAACTTAGCTTGTTT
TTGTCTCGTCCCGCCAGCGTCCGCTAACACGTGTGTAGGATATCTTCGCC
AAACAAGCGTGCAGGCTTTCTCTCTACCATGCGCTGATTCACCCCCTCCC
CCTCCTTGCTTTGCATCTGCTGGCGTTGCTCGCCTACCTGCCTTACCAAA
CAAATCGGACAAAAAACTGTTAAAATCAAACAAATCGGACAACCACCAAT
TTGTTCCAAGCTTGGGGGCTTCGCGCACCTGCTGAGGGGCCTGCGAGAGG
ACGTTCGGCCGAGCCTCCGTCGCCGCGTCCTCCAGGCCATCTCCACCGTC
GTCGACAGCGACCCCACACTCGCCCCGTACCTGCTAGACCTCGACCACGG
CCAAGACTCGGGCGCCGCTTTGCGCAAGAAACAAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGGAGGAGGGGCCGGAGGAGGATCGAGCAACAAGGTGAAG
ACAAATACCAAGAAGAGGGGTAAGGGCGACAAAAACAGAGACAGAGGCGG
CAGGAAACGGTCCACCCCAGCAACTGCCGCAGCACCAACGTCCCCGGGGG
CGGTTGTCGGCGAGGACGACCTCCTGGAGCGCATCACCGCGATCCTCGGG
TATCACGGCGTTGCGGGCGGCGGCGGTGGCGGCGGGAGCGGCGACGCGGG
AGAAGAAGAAGGATCAGGAGGAAGGGGTGGGAGAGAAGGAAGAGGAGGAG
GGCGGGGAGGGTCAAGGGTCCGCCGCGCCGGCGGCGTGTTTCGCGCGCTG
GTCCGGCGTTTCCCGGTGCCGCAGGTACGGCCGCCGTTTTCTTCGACGGT
AGGCAGCCGTGTCGCTGGCTTTGCGGCCGCGACCATGGAGCAGCAGCAGC
AGCAGCAGCTGGAACAACAGGGGGTGGGTGTCTCCGAAGCTGCTGCTGCT
GCTGCTGCGACGGTCAGCGGTGATCGTAGCGGTAGCCCGGCGACAGGTCC
GCTGACTAGCGCAGCAGCGGCGAGGGAGGAGGAGGAGGAGGAAGAAGAAG
CCGCTCGGGAAGGTCGAGACTGGTGGAAAGATGAGGTGAGGGCCTTGAAC
GATGGCGGTTGGCGGCTTGAGAGGGAAGCGTTTGGCCGGGGCTGCGGTCA
AGCAGGCAGGGGCAAACAGACGGCGACCCCACCCGCCGTCATCGATACAC
TGCTGTGCAGTGTGCTCCACGCCCACACCATAGTTTTCATTGTACCAGTA
CGTTTGTGCACACGCTTCGAAAAGGTGTATAATCATATAATCATGCACTT
GAATTTTTGCGAAGGGCTTGTCTCGAGAAGTCTTCTCTTCATCATCGTCC
ACCGCCGCCACCGCCGCCGCCGCCCCCTTTTTTTGCTCCAAAGGTGGCCC
TTGAGGAGGAAGGCTTCGAGCAGCAGGCGGTAGCAGCGGCCGCAGCGGCG
GCCACGCTAACTGCAGCAGGCACCCGCGCCGCCGGGCGAGCGCGCCGTGG
AAGAGGCCCCCCCGTGGCTGGGGGAAGCTCCGGGTGGGTCTGGTGGTGGG
GTCGCGGCCGGCGGGTTTCTCGGGAGAGGCTGGTGGAGGAGGCGCTGGAG
CTTACGTTCCGCCTCATCATGTCGGGGGACGTGGCGTTGGATGCCTTGAA
GGTTTGTGCCTGGGTGTGGGGGGGGGGGATTCAGAGCTGGAAGAGTACAT
GCGAAGTAATGCCTGCCATGTGCTGTGCATGATGTTGTTCTGATGGAGTC
GGGTACGCGCTATGGTATGCCATGCTTTGGCTTTGCCACTGATCGCGGCC
CTGGTTGCTTACCGTGTAGGCATTTGCATCTCTCTCTCTCTCTCTCTCTC
TCTCTCCCTCTCCCCTGTAGACGATGAGCATCTGGCCGATGTCCCCGCTC
TTGAAGAATGTGCTCTTGTCCAGGGTCTTTTGAGACTCCAGGACGCACGG
CATGTCCACCAAGCGCGTGGTTATTACCCTGGTGATATAGCAGTAGTGGT
TTATGCCTGTTTAGCTTATCTTTTATCTTGGCCATGGAGATATGTCTCGC
CGATTTGACCAGTTGGGGGCAGAACACCAGCCCAGACTTACCACCACCAC
CGCACGACCACCAACACCAGCACCGTGGGCATGTTTTGTTTTGTTTTGTT
CTGCTCGTCTGATGATGTGCCATGCAACTGAAGGTGGACGGAAACCTTGT
GGCGGCGCTGAGGAGGGTCGCAGAAGGCGGGGGTCAGCGCCTGCAGTACG
ACGCCAAGGTGAGCTCTTGCTTAAGCTTGCTGCATGTGCTTGTGTGAGTC
AGTACATGTACTGACAAGATCCATCTTTGGGGTATGCACGCGCACATTCC
TTCCCCAGGCGCGGGTCAGCCTCGACTGATGCCCCAAGAGCGCCTTCCAT
ATGTTTGTTAGCTTCATTTTCACCCTCGTAGATAGGAAAGACATGCTGCG
TCGTCGTGGATTGGGCACCAGTCAGTCAGTGCCAAACGACGAGAGGTGCA
TCTTTTTCCTGCATCTCGGAGAGCCTTCTTTCCGCCGGGCCGAACCTACC
CTCACCCACCTTGATCACCCCGGCTTACCTGCACGTGCCTACCCCATCCT
TCTTGTTTTGTCCACAACGCCGAAAATCAAATCAAACCAAACAAAACAAA
ACCAACGACGAAAATCGGCAGGGCGTTCTTCGAAGAACGGGCCCGAGGCT
GTCCCACTCGCAGCACCTCGCGTACAAGTGCCTCGCGTCCCTCGGCGCCC
ACGAGTGGCGCCCCAAGATGAAGGGGCAGAAGGGGATACGCATCCTGTGC
TTTGACGGAGGGGGTACCCGAGGGGTGCTCACGCTCGCCCTCCTCAAGCA
CGTCGAAAAGGTGGGACATGGCACGACGGGATAGAACGGGACATGTGGCA
CGGGTTTTGTTTGTGGGACGGCATTGTTGTGTGTGGCGGCCCACTCAACG
GCAGAACGACCACCACAACAAGAGCCAGAAGACACAGCGAAAACGGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACAACAATAGAAATCAGCAA
CACCCACACCAACACAAACTACCAGCGGCTCACCACCCAAGCAGTAACGG
CGGCATGTAGCCCCTAAATTGCCACTGATCAATTTTTGTCTACGCCGCGT
TGATCGTTCGATCTACCACGAGCACCTTACGTACCCCTTTGGTTTTGTCG
GGTGGCAGGCGCTAGGCGGGCGACAACCGCACGAAGTCTTCGACATGATC
GTCGGCACCAGCACGGGCGGGGTGAGTGGTCGTAACTATCCTGAATCCCG
ACCCTAATCCTAATGCTGACGTCGGTGGCCTCCTTCCCCCACTACGTACA
GAGCAATGCACCCACCCATAGGCAAACAAAAACAATAAATTAAGCTGAAA
ATGTAAAATGTAAACCCCACGTCTACCACGCGTGTGCGCAAAGGTGAATT
TTCGCGCCCTAAATTTATTGACAAACACCTCGTTGTTGTTGTTGTTGTTG
TTGTTGTGGTGGTGGTGGTGGTGGCGTTTGGCAAGTCTCCAATACGACCC
ATAAAACCGTGGGAATCGAGGGGTCACCGCCGCTGCTACTGCCGCTGTGA
TCGCGGAAAAAGCCATTTTCAATTCTTGCGAGCACATATCATATTCGCGG
GCCCCTCTGGAATTAGGTGCTTCCGTGGTAGGTATACATGATATGTGAAG
ACAACCGAGCAAGGGCGCTCCTCAAAACGGTCGTTTTCGAAGAGATATCG
TGTGTATGTTGCCTATCGAGGATATATGTATTCCGCGCCCCCCCCCTGTT
ACCGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCAGATCATCGCGGG
GCTGGCGGGGGTGAAGTGCTTCCCCGTGCAAGAGTGCGAGAAGATGTACG
ACAACCTCATCAATAAGATCTTCATCAAGCACCCGGGGGGCGGGATGAAG
CTCGCGCTCAAGCAGGTGCGTGAGTTGAGTTGAGTTGCACTGCACGAACA
ATCTTCCTCCCCCCTCAAGTGGTTAGTGTAAGCTGAGTGCTGTCGGGCGA
CTGCGTGGCTCACGAACGCATACACATCTGCACCCACCCAGCCGGCCCTT
CTTGAGGCAAAAGGCGGGACGGACGAATGGTTATTTTCTACGTCATCCAT
CCTCATGGAAGAGTGAACTACAATCAAACCCAAATCGCGATCCAAAATCC
TCCGAAATCCTCCGAAATCAGGCTTTCTACGACGAGGTCGGGTGGATGAA
GATCTTGGACTCTATCCTGGCGGACCAGCTGATGATCGACTCTGCGCAAG
ACCCTCTCCGCCCTCTCATCGTCTGCCCCAGCACCATCATCAGTTCCAAC
CCCGCCAGGGTCATGCTGTGGAGGAACTACAACTACCCCCCGGGCCATCA
GGGCAGGCAAGCGGAAGCGCGTACACAAGAAAGCACATACTTCGAAGTAT
ATAACTGAGATGTTATGTGCTGCTGGCTTGGTATAGTAGTCTCGCCCCAA
TATTGAAGCGCGGAATTGATGCGCTTGCTGGCAACCTTTCTTTGCCAAGC
CGTATCTCGCCGAGAAACAGGGAGCTGTTGTTTTTACACAACACCCTGTA
CATCCACGTCTGTTAAGTTGTGGCGTGCCGCACATGTTTGTGGTGTCCCG
CTGTGCTCTCTTTTGTCCTTGGAAAGTCTGCCTGCGAGGAGACCGGTATT
TTGTCTCGTCGCACGTTACTAATTTTACTATTTTTTTATCATCACATTTA
TTTCCAGAGCTCGCAGGGGCGCCTTGCCACAGGGGGCAGTCTTGCCAGAT
ACTCTGAACCGCGGTCACACAGAAGGGTTTCTCTCCCCGAGGCCCCCCCA
CCCTCCCCTCCTGCGGTGCTTGCCTTGAGATTCTTAACGCGAGAAGAGTT
CAGCCGTTACTGCCTGCATGTAGTATTTTATTTTCGTGGAGACAGCGGTA
TCCACCCATACTCCCTTTTTTTTGTGTGTGTGTGTATCCTGTTCTCCTCG
CTCATCGCTCATGGTGTATCGTTCTCGTTCTCGTTATCGTGGTGGTCCTT
GTCCCAGGTACTACGGAAGTTTCAGGTACATGGTGCGGCAGGCCATTCGC
GCCACGACGGCAGCACCGACGTTTTTTGCGCCGCTTATGATCGACGGGGC
GCTCTACTCGGACGGCGCTCTCCTGTGCAACAACCCCTCCGCCGTGGCCT
TCCACGAAGCCAAGGTGTGGAAATCGAAAATAGCGGCAGTCGTGCGCTCT
ATTCGCCGCTGTGCTTGAGGCTAAGTTGCGTATGCTGTTATAGACTTACG
TCTGCTCCGCGAAACCAAGGTGCGAGACTAGCGAAAGTCGTGTGCCCAAC
CGCTGTGTTGTAGACTCTCATCAATCCCAAAAGAAAAGAAAACCAGGTAC
TCTGTAGCATGCATGCTGAATCCCGCCTGTTCCTCGAAAACATTGTCCTT
CCTAGACGAAAGGCGCCGAAGCGTCTAAAAGTTGTGAGCCTGTTTGTTGT
TTTGTATCAAAATCTAGTTTCTGGTAAACTTCTTTTTCTCTGCAGCACGT
GTTTCCGGGAGTTCCTATCGAGATGATTGTGTCCCTGGGCACGGGCTGTT
TCTTCGAGGAGAAGAAGGAGTTCCTAGAGCCGGCGGACCTCGGCTGGGAT
GGCATCATCAACCAGGTGAAGAATGAAGCGGCGGAACTTCTGTACAGTAT
CTACGTTTCTCAAGAGTTAACACCGAATTCCCTTAATTCCTCATTTTCAG
TGCAGGAAGGATGTGCCCTTTGCGAAGAATGAGCCATTTAGCTATCCACT
CTGGCGCTTCGAGGCACCCACCTATTTACGCATATTTTGGACGACTTTTA
ACGAACCCCGCACGGAATTCAAGATATTTCGATGAATCTTTCAGTTAACA
ATGAAGTTAACGCATACGAAAAGTACTTGATCGACTTTTTTGACGATGAG
AAAACCGCGAGCGCGCCTCAGATATGTCTGGTATCTTAGGAAGAGCCGGA
TGCTGCCCGTGCCGCCGCTGCTTCACCGAAACAACAAACAATCAGAGGCA
GGCACGGTACCCAAACAAAAGCGTCTTTAAAGTAACCGTGCTTGCGCAAC
GACCCACGGGGGGGCGGGTCCTCAGGTGATCGCCAGCGCCACAGAAACGG
AGATCACCACAGACATCGTGTCGGACCTTCTCCCGCCGGAGCAGTTCTTC
CGGTTCAACCCCCGCATGGAAGACATGCCAATCGACGAGGTTCGGAAGGA
GCGCCTCGACTGGCTCAAGACCCTCGCCAACGAGTACTTCGAGGTAAATT
TAACATACTTTCCTCTGTCTCATAAGTTAGGGTACCTAAATTTGTACGGG
CCCTTAACCGTGTCCGATCTGTTTTCCGTTTTTTTTTTGAAATCTTCGGT
GTTTTTTTAGTACTGTACAAGACATGTTTTTTTTTTCAGCTGATGCTTGA
GCCATTCGGCCGAACGGCAGAAAAATTTCAGTCGGCCCAAAAACGGTCGT
ATTTAACGCGTTTCCTGTAAATGCCACCATAGATTGACCCGTTAGAGTGA
CGTCAGATGACCAGCCAGAACCTATATCCTGGCCGGGGTACCTCACAGAG
AGACAGAACCGTTTCCGGGATTCCTAGGAGGAACAGAGCGTTCCTCGGAT
GGATACGGGATATCTACCCGTGTGCAATTGCACCCCTGGCTGTCTCGCCC
TTCACGCACTCACCCGGTGTATCCTCTACACCAAACAGCCAAGAAGAGAA
GCCTGCGGCCTGTAGAACCTGTAAGGGCTCATCCCCCTTAGATTCCCACG
GGAAAGAAAGTGACGAACAAAAATAAATAATAATAATAATCGTCCTTCTC
GCCAGCCACGCACAAGCCTTCTCTAAGGCCTCCTTATCGTATTTTACCCC
CCTTTCCAACGTCCCCTCCCTCTGCCGCTTCCTCACCCCGGTATGCTCCA
TTTTAAAGTCGTTCCTCACCCCGGTATGCTCCATTTTAAAGTCGTTCCTC
ACCCCGGTATGCTCCATTTTAAAGTCGTTATCGCCCATTTTACGGAGTGT
TTGGTTGGAAACCTTGAAAATTCCCAAAATATATTCTCAATAATATTCCC
AAAACAGCCCAGGTATAATATATTTTGACCAATTTTAGGTACAGAATAGA
TCTTCGTTTTTTCTTCTTTTTTTCCTATAGCTTCATGTTTGTTTTTTCTT
TCTAACGAACCCGACTAGGCCACCATCACGACGACGGTTGCACCCAGACG
ATGTACACGTATTGCATTGAGATACCCTAACTTATGAGACAGAGGAATAC
CACTCTGTTCGGGAATATAAGCGAGCTCGGGACTCAAAGCGGTGTACCTT
CTGCTGGTTCGGGTGTTTTTCAAAACGGTTTTTTACATCGGATTCGGGGC
GTTCTCACGGGACTGTCAAATCCGCTGCTCTCTCAACACGAGCATTCTTC
ACACCCCACACTGCCACCCGAAGAAGCAGTACTCAGAGCTCGCGTCACGT
TTGCACCCGCTGAGAGGTATCAACTTTTATCTCAAAAACGATTTGACGGC
GGATTCGCGGCTATCTCGCGGGAGCATCAAATCCGGTATTTTTCCAAAAT
ACAAAACTGTCAGCACTCCGGCCATGTCTGCTGCTGGGTCTGCTGCTGGG
TCTGCTGCTGGGTCTGCTGCTGAGTGGCCATTCAGGGACAGTTTCAGCGC
ACCCGGGTACTCGGAGGTTTTCCGCACTCCCCCCCCCTTGCGTTCGCGCA
GCTGCCGTAAAACTGAATGTTCAGGGCATTTTTGGCTGTCTCAGGGCCTC
AAAATTGAAAACCCGGGGATGATACTCAAGCATCCCCTGACCACCCTGGG
ATATTTTTTTAATCATTTTTGACCATCCCATACATGTGGCGTTGGTCACC
GGTGGTCATAGGTTGTACAATAGCAATGTACGCCGCCTTCCACCCACCGC
GCTTATATTCCCGAATATCTCGAGCACGCTTATATTCCCGGTATTATATA
AATAGGAGTATCACGCACCACCAAAAACCATGTTCCTTTGTAGTTTACTT
CGTACCAGTAATTTACCATGCCATAGTTTTGACAGACGTGGGGTATGGCT
CCTGCTGGTTTGCCCCGTGTACATGTACGGACATGGTCCGGTGGTTGTAG
ATGTGGGGGGGTCAGAGCGTGGGGGTTGAGACGGGGGACCAGGCTGAAAG
ACGGCTGGCGTCACGAGTATTCCGAGTCGTGCGTATTTTGGGGTGGTGAT
GGTGAGGAATGGATGTGTTGGGCTATTGTACCTACCTAAGGTCGTTGGAG
TGGTTTGGTTCCAGTGTGCAGACCACCCTCATAAATCGGGCTCGCACTTG
GTGCGAGTAACGAGGGCCAGCTTAGCTTTGCGAACATGTGATGACACCAG
CACCAGCACCACATGGCTGTCTCTGCTCGTCTCAGACGTTTTGGGGCGTG
CTTAGAGTGGTGGGATTTCTACGGCCACACACACTGCTTGATCTCAAAAT
ACCCAGCCAGCCTGCTCCCACCGTCTTGTTTAGTCCCCCGGAAAGGTGAC
TATCTACTGCGGTGCATTCGTCGACCTCGAGCCCAGCATTCACGTGCCCC
CCTTTTCTCGCCCCCCCTCCCCTCCCCTCCTCTCCTTTACCCAGACACCC
GAGAATCAGGCGCGCCTGCAAGAAATGGCGGAAAGGATGCTCCCCGACGC
GTAGAGAGGTCGTACAAGCAACGTAACGTAACCGGCTCAGGTTTCGGTTT
CATCCTCCACGAGTGGCACCGGCAGCGGTGACATTTACGGAGCCACGCCA
CTCGCCCCCCCCTCTCCGAGGCGGCTCATTTGGTCACTGCGACTCGAATC
GACTCGGCTCAGCTCGGCTCGACTCGACTCGACTCGCATGCCCGTTGAAT
GGCTGTCGTCGACCAATCACCAACCAGGAGAATGATCATGATCATGCCAG
AGTTCGATTGGTCGTGGCACGGCACGGGTGTTAAATTAGGAGTACATCGC
GCGGTCGGTAGTGGCCGCACCGCGCACGCTCTTTCGGTGTGTGTCCTTTC
GGTGTATATCCGGCGGAACGGGGTATCCGGCGGAACGGGGTATCCGGCGG
AACGGGGTGTGCACCCCTGCGCGTACCAGTTCGTTGTTGCGACGGTTATT
TTTTTGTTTTTGTGTCTCCTACTGAGGAAGGCGTTTCTGTTTGATATGTG
CTTGTTTGTTTGGAGGTGTGTGTGAGTGTGTGTGTTTTTTTTTTGCTTCC
TTGGTTTGAGTTGTTTGGTTTTCCGCTCCGGGGTTTCTCTCTCGTCTTCG
TCACGCGAGACACGGCGACACATTGAGAGACATATATATAGAGAGAGATA
AAAGAGAGAGAGAGAGAGAGAAGAGAGAGAGGCTTGGTCGCCTAAGAAGC
ATAGCCGAGGAGGTGGAACACGTTCCCTCCCGCAGCCGTCAATCAAATCG
AAATCGGCGGTTGGTTGCGCCCCGGCTTTTAGAGGGTCAGAGGGATCGAG
AACTCGGCTATTTTTTGTTGTGGCGAGTGGAGATGTTTCCGGTAGTCCAG
TTCAGTCCTCACCCCTTCATTCGAGCGCCATGTGCGTTGCAACCACAAGT
GTTTGTTATTGTGGGGGGGTCGACAGTCTGGTATCCCGCCCCTCCCCGTC
CTGAGGGATCAGGGTGCGTCTTTGGGTCGTTTGTCTGTGTGCCTCCGTTG
GAAGAATGCCGCCGCATGAGTGTGTCACCCAGCCATGCGGCCCGGTTGTT
GTTGCTGGGTGTTTCCCGTGTTTCCGGCGGGTTTGCGTCTTGTTTTTTGT
GTGTTATTGCGTGAGCTGTGTGCGTTTGTCATGGTTTCCCCTTCCCCAGA
GGGTTTCGCCTGAGCAGGCGTTCTTATTTTTTCGCTGCTCCGGACTACAC
CGCTGCTGTTGTCGTCCCTGTAGATTGCTCCAGGACAGGCTGAAGAGCGC
ATTCTATTCGCACGATACACGAAAGGTTTGATGCTTGATATGACTAGGAC
TAGGACGGGGAGCGGCGTTATGATGCTTGATATGACTATGACTAGGACGG
GGAGCGGCGTTGCCAAGGAGCTTTTTGGAGCCGGCGGCGTTAGTCTTTTA
CCCGCTTTTTTTCTTATTTTTTGTGTGTTGTGTCCTTTGGAGAATCGTAG
GATTGCATTATATGGGGGGGGTGCGGTGCGGTGAGTTAGCTCGTGTTTTG
TTCGTTGGTCTGGGCACAAAAAGCGGCTCTCTTTCTCTCTGCCGGTGCTA
GCTAGCTTCGCACGAGTAGGTACACTTCAGATCAGGAAAGACAAATAGCG
GC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig95:213323..226874+

>mRNA_C-linearis_contig95.16973.1 ID=mRNA_C-linearis_contig95.16973.1|Name=mRNA_C-linearis_contig95.16973.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6162bp|location=Sequence derived from alignment at C-linearis_contig95:213323..226874+ (Chordaria linearis ClinC8C monoicous)
ATGCCCGCGGCATCCTCGGCACAACACCCCCTCGGGTCTCCAAAGCTCAG
GGCTGATGACCAGCCGCAAGGCGAGAGAAATCCGGCAAAGGGGCCGGTTA
AGGTTAAGGTTAACGCTAAGGTTAAGGCTGGAGCGAAGGAGTCGGCAGGG
GCGGCGGCGGCGGCGGCAGTGACGGTCGAACGTGGCGAGGGTAACAGCGC
TCGGGAGGGAGGAGCCTTGTCGACTGATGGCGCGGCTGGGGCTGCGGCGG
GTGCCCGTGCCGCCGCTCCGACGCATTTTATTCCCAAGATGCCCGCGGCA
TCCTCGGCACAACACCCCCTCGGGTCTCCAAAGCTCAGGGCTGATGACCA
GCCGCAAGGCGAGAGAAATCCGGCAAAGGGGCCGGTTAAGGTTAAGGTTA
ACGCTAAGGTTAAGGCTGGAGCGAAGGAGTCGGCAGGGGCGGCGGCGGCG
GCGGCAGTGACGGTCGAACGTGGCGAGGGTAACAGCGCTCGGGAGGGAGG
AGCCTTGTCGACTGATGGCGCGGCTGGGGCTGCGGCGGGTGCCCGTGCCG
CCGCTCCGACGCATTTTATTCCCAAGATCGCGCCGCCTCCGAACGCGTGG
AAAATCCTCTCCCACAAGGCTGCCGTGGACCTCCCATCAAAGCAGATCGC
GCCGCCTCCGAACGCGTGGAAAATCCTCTCCCACAAGGCTGCCGTGGACC
TCCCATCAAAGCAGCAGCAGCAGAAGTCCTCGGACCGATCTGAGAACCGT
TCTTCTGGGGTCTCACTCTCTACTGCGCCTAGCGGCAGCAGCAACAACAA
TAACGGCGGCGGCGGGCCCCCCAGCCGTTCGGAGTCGCGGGATGATGCCA
CCCAACGCCGTGCCCCCGGTGTCTCTGTCTCCGGAAACGGCGGAGATGTC
GGAAATGAGGATGAGGACGAGGAAGACGAGTTCCGTGATTTCGGCGACGT
GCCGCTGTCGGTGACGAGCATCCCGGAGCCTCCAGACATGGAAATCACCA
TCAACCGGAGCAGCAGCAGAAGTCCTCGGACCGATCTGAGAACCGTTCTT
CTGGGGTCTCACTCTCTACTGCGCCTAGCGGCAGCAGCAACAACAATAAC
GGCGGCGGCGGGCCCCCCAGCCGTTCGGAGTCGCGGGATGATGCCACCCA
ACGCCGTGCCCCCGGTGTCTCTGTCTCCGGAAACGGCGGAGATGTCGGAA
ATGAGGATGAGGACGAGGAAGACGAGTTCCGTGATTTCGGCGACGTGCCG
CTGTCGGTGACGAGCATCCCGGAGCCTCCAGACATGGAAATCACCATCAA
CCGGAGTTCGGGGACACCTGCGAACGCGCAGACCCGGCCCGCGGCAGCCG
CTGCCGCCAAGGCCGCCGCCGACTCGGCCAACGTCCTGGAGGAGTGGGTA
GACGGGGAGCCGGTGGAGGTGCATCATGGCCGTTCGGGGACACCTGCGAA
CGCGCAGACCCGGCCCGCGGCAGCCGCTGCCGCCAAGGCCGCCGCCGACT
CGGCCAACGTCCTGGAGGAGTGGGTAGACGGGGAGCCGGTGGAGGTGCAT
CATGGCCGGGCTCGGATGGCGTCCAGCCAGCAGCCGCACCGCCCCGCCGA
CCTCGCCGGCGCTTCCGGGGAGATGAAGCTGGTGGAGATGGCCTGCCTGG
CGGGACTGTCATCCACGGCGGGCAAGAGCGCCGGCCGCATCATGCACGAG
GAGGGCTCGGATGGCGTCCAGCCAGCAGCCGCACCGCCCCGCCGACCTCG
CCGGCGCTTCCGGGGAGATGAAGCTGGTGGAGATGGCCTGCCTGGCGGGA
CTGTCATCCACGGCGGGCAAGAGCGCCGGCCGCATCATGCACGAGGAGCT
TGGGGGCTTCGCGCACCTGCTGAGGGGCCTGCGAGAGGACGTTCGGCCGA
GCCTCCGTCGCCGCGTCCTCCAGGCCATCTCCACCGTCGTCGACAGCGAC
CCCACACTCGCCCCGTACCTGCTAGACCTCGACCACGGCCAAGACTCGGG
CGCCGCTTTGCGCAAGAAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
GAGGAGGGGCCGGAGGAGGATCGAGCAACAAGGTGAAGACAAATACCAAG
AAGAGGGGTAAGGGCGACAAAAACAGAGACAGAGGCGGCAGGAAACGGTC
CACCCCAGCAACTGCCGCAGCACCAACGTCCCCGGGGGCGGTTGTCGGCG
AGGACGACCTCCTGGAGCGCATCACCGCGATCCTCGGGTATCACGGCGTT
GCGGGCGGCGGCGGTGGCGGCGGGAGCGGCGACGCGGGAGAAGAAGAAGG
ATCAGGAGGAAGGGGTGGGAGAGAAGGAAGAGGAGGAGGGCGGGGAGGGT
CAAGGGTCCGCCGCGCCGGCGGCGTGTTTCGCGCGCTGGTCCGGCGTTTC
CCGGTGCCGCAGGTACGGCCGCCGTTTTCTTCGACGGTAGGCAGCCGTGT
CGCTGGCTTTGCGGCCGCGACCATGGAGCAGCAGCAGCAGCAGCAGCTGG
AACAACAGGGGGTGGGTGTCTCCGAAGCTGCTGCTGCTGCTGCTGCGACG
GTCAGCGGTGATCCTTGGGGGCTTCGCGCACCTGCTGAGGGGCCTGCGAG
AGGACGTTCGGCCGAGCCTCCGTCGCCGCGTCCTCCAGGCCATCTCCACC
GTCGTCGACAGCGACCCCACACTCGCCCCGTACCTGCTAGACCTCGACCA
CGGCCAAGACTCGGGCGCCGCTTTGCGCAAGAAACAAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGGAGGAGGGGCCGGAGGAGGATCGAGCAACAAGGTG
AAGACAAATACCAAGAAGAGGGGTAAGGGCGACAAAAACAGAGACAGAGG
CGGCAGGAAACGGTCCACCCCAGCAACTGCCGCAGCACCAACGTCCCCGG
GGGCGGTTGTCGGCGAGGACGACCTCCTGGAGCGCATCACCGCGATCCTC
GGGTATCACGGCGTTGCGGGCGGCGGCGGTGGCGGCGGGAGCGGCGACGC
GGGAGAAGAAGAAGGATCAGGAGGAAGGGGTGGGAGAGAAGGAAGAGGAG
GAGGGCGGGGAGGGTCAAGGGTCCGCCGCGCCGGCGGCGTGTTTCGCGCG
CTGGTCCGGCGTTTCCCGGTGCCGCAGGTACGGCCGCCGTTTTCTTCGAC
GGTAGGCAGCCGTGTCGCTGGCTTTGCGGCCGCGACCATGGAGCAGCAGC
AGCAGCAGCAGCTGGAACAACAGGGGGTGGGTGTCTCCGAAGCTGCTGCT
GCTGCTGCTGCGACGGTCAGCGGTGATCAAGAAGCCGCTCGGGAAGGTCG
AGACTGGTGGAAAGATGAGAAGAAGCCGCTCGGGAAGGTCGAGACTGGTG
GAAAGATGAGGTGGCCCTTGAGGAGGAAGGCTTCGAGCAGCAGGCGGTAG
CAGCGGCCGCAGCGGCGGCCACGCTAACTGCAGCAGGCACCCGCGCCGCC
GGGCGAGCGCGCCGTGGAAGAGGCCCCCCCGTGGCTGGGGGAAGCTCCGG
GTGGGTCTGGTGGTGGGGTCGCGGCCGGCGGGTTTCTCGGGAGAGGCTGG
TGGAGGAGGCGCTGGAGCTTACGTTCCGCCTCATCATGTCGGGGGACGTG
GCGTTGGATGCCTTGAAGGTGGCCCTTGAGGAGGAAGGCTTCGAGCAGCA
GGCGGTAGCAGCGGCCGCAGCGGCGGCCACGCTAACTGCAGCAGGCACCC
GCGCCGCCGGGCGAGCGCGCCGTGGAAGAGGCCCCCCCGTGGCTGGGGGA
AGCTCCGGGTGGGTCTGGTGGTGGGGTCGCGGCCGGCGGGTTTCTCGGGA
GAGGCTGGTGGAGGAGGCGCTGGAGCTTACGTTCCGCCTCATCATGTCGG
GGGACGTGGCGTTGGATGCCTTGAAGGTGGACGGAAACCTTGTGGCGGCG
CTGAGGAGGGTCGCAGAAGGCGGGGGTCAGCGCCTGCAGTACGACGCCAA
GGTGGACGGAAACCTTGTGGCGGCGCTGAGGAGGGTCGCAGAAGGCGGGG
GTCAGCGCCTGCAGTACGACGCCAAGGGCGTTCTTCGAAGAACGGGCCCG
AGGCTGTCCCACTCGCAGCACCTCGCGTACAAGTGCCTCGCGTCCCTCGG
CGCCCACGAGTGGCGCCCCAAGATGAAGGGGCAGAAGGGGATACGCATCC
TGTGCTTTGACGGAGGGGGTACCCGAGGGGTGCTCACGCTCGCCCTCCTC
AAGCACGTCGAAAAGGGCGTTCTTCGAAGAACGGGCCCGAGGCTGTCCCA
CTCGCAGCACCTCGCGTACAAGTGCCTCGCGTCCCTCGGCGCCCACGAGT
GGCGCCCCAAGATGAAGGGGCAGAAGGGGATACGCATCCTGTGCTTTGAC
GGAGGGGGTACCCGAGGGGTGCTCACGCTCGCCCTCCTCAAGCACGTCGA
AAAGGCGCTAGGCGGGCGACAACCGCACGAAGTCTTCGACATGATCGTCG
GCACCAGCACGGGCGGGGCGCTAGGCGGGCGACAACCGCACGAAGTCTTC
GACATGATCGTCGGCACCAGCACGGGCGGGATCATCGCGGGGCTGGCGGG
GGTGAAGTGCTTCCCCGTGCAAGAGTGCGAGAAGATGTACGACAACCTCA
TCAATAAGATCTTCATCAAGCACCCGGGGGGCGGGATGAAGCTCGCGCTC
AAGCAGATCATCGCGGGGCTGGCGGGGGTGAAGTGCTTCCCCGTGCAAGA
GTGCGAGAAGATGTACGACAACCTCATCAATAAGATCTTCATCAAGCACC
CGGGGGGCGGGATGAAGCTCGCGCTCAAGCAGGCTTTCTACGACGAGGTC
GGGTGGATGAAGATCTTGGACTCTATCCTGGCGGACCAGCTGATGATCGA
CTCTGCGCAAGACCCTCTCCGCCCTCTCATCGTCTGCCCCAGCACCATCA
TCAGTTCCAACCCCGCCAGGGTCATGCTGTGGAGGAACTACAACTACCCC
CCGGGCCATCAGGGCAGGCTTTCTACGACGAGGTCGGGTGGATGAAGATC
TTGGACTCTATCCTGGCGGACCAGCTGATGATCGACTCTGCGCAAGACCC
TCTCCGCCCTCTCATCGTCTGCCCCAGCACCATCATCAGTTCCAACCCCG
CCAGGGTCATGCTGTGGAGGAACTACAACTACCCCCCGGGCCATCAGGGC
AGGTACTACGGAAGTTTCAGGTACATGGTGCGGCAGGCCATTCGCGCCAC
GACGGCAGCACCGACGTTTTTTGCGCCGCTTATGATCGACGGGGCGCTCT
ACTCGGACGGCGCTCTCCTGTGCAACAACCCCTCCGCCGTGGCCTTCCAC
GAAGCCAAGGTACTACGGAAGTTTCAGGTACATGGTGCGGCAGGCCATTC
GCGCCACGACGGCAGCACCGACGTTTTTTGCGCCGCTTATGATCGACGGG
GCGCTCTACTCGGACGGCGCTCTCCTGTGCAACAACCCCTCCGCCGTGGC
CTTCCACGAAGCCAAGCACGTGTTTCCGGGAGTTCCTATCGAGATGATTG
TGTCCCTGGGCACGGGCTGTTTCTTCGAGGAGAAGAAGGAGTTCCTAGAG
CCGGCGGACCTCGGCTGGGATGGCATCATCAACCAGCACGTGTTTCCGGG
AGTTCCTATCGAGATGATTGTGTCCCTGGGCACGGGCTGTTTCTTCGAGG
AGAAGAAGGAGTTCCTAGAGCCGGCGGACCTCGGCTGGGATGGCATCATC
AACCAGGTGATCGCCAGCGCCACAGAAACGGAGATCACCACAGACATCGT
GTCGGACCTTCTCCCGCCGGAGCAGTTCTTCCGGTTCAACCCCCGCATGG
AAGACATGCCAATCGACGAGGTTCGGAAGGAGCGCCTCGACTGGCTCAAG
ACCCTCGCCAACGAGTACTTCGAGGTGATCGCCAGCGCCACAGAAACGGA
GATCACCACAGACATCGTGTCGGACCTTCTCCCGCCGGAGCAGTTCTTCC
GGTTCAACCCCCGCATGGAAGACATGCCAATCGACGAGGTTCGGAAGGAG
CGCCTCGACTGGCTCAAGACCCTCGCCAACGAGTACTTCGAGACACCCGA
GAATCAGGCGCGCCTGCAAGAAATGGCGGAAAGGATGCTCCCCGACGCGT
AGACACCCGAGAATCAGGCGCGCCTGCAAGAAATGGCGGAAAGGATGCTC
CCCGACGCGTAG
back to top