mRNA_C-linearis_contig95.16971.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16971.1
Unique NamemRNA_C-linearis_contig95.16971.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:207538..210230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size614
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16971.1prot_C-linearis_contig95.16971.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 207739..210230 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.719925-UTR-C-linearis_contig95:207537..2077381622930807.719925-UTR-C-linearis_contig95:207537..207738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 207538..207738 +
1690881260.3686562-UTR-C-linearis_contig95:207537..2077381690881260.3686562-UTR-C-linearis_contig95:207537..207738Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 207538..207738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.7353015-CDS-C-linearis_contig95:207738..2078661622930807.7353015-CDS-C-linearis_contig95:207738..207866Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 207739..207866 +
1690881260.3780706-CDS-C-linearis_contig95:207738..2078661690881260.3780706-CDS-C-linearis_contig95:207738..207866Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 207739..207866 +
1622930807.751239-CDS-C-linearis_contig95:209947..2102301622930807.751239-CDS-C-linearis_contig95:209947..210230Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 209948..210230 +
1690881260.3872697-CDS-C-linearis_contig95:209947..2102301690881260.3872697-CDS-C-linearis_contig95:209947..210230Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 209948..210230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16971.1

>prot_C-linearis_contig95.16971.1 ID=prot_C-linearis_contig95.16971.1|Name=mRNA_C-linearis_contig95.16971.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=137bp
MWMSVSMWPVLCWTCLAAAAVPAAGTCKARASSPAFTARLASRSPPMGAS
PPLPPLPAAFAFARPRHALSLGGQRHPPRQRRRRRHQQRRQSRAPRMLCS
SPSFSSERPGLVSREQLLAAPWQRSIGAASFSHSSSC
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mRNA from alignment at C-linearis_contig95:207538..210230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16971.1 ID=mRNA_C-linearis_contig95.16971.1|Name=mRNA_C-linearis_contig95.16971.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2693bp|location=Sequence derived from alignment at C-linearis_contig95:207538..210230+ (Chordaria linearis ClinC8C monoicous)
AGCGAGATGAAACAAAAGACAAAAGACAGCGACGAGCGTGCAGTGTGACT
GCTACGGAGAAGCACCTTGTTACTACTTGGCGGGCGTGGTAGGAAGAGCG
CTTGCTGTTCCGACGGAGGGGAAAGCCTGCAGTGTCAACTTCCCTTCAAG
CGAGGGAGCAGACAGAGAAGGAAAGTCGGCTTCCTCCTCCTCCTCCTGCT
GATGTGGATGTCGGTATCGATGTGGCCGGTGCTGTGCTGGACCTGCCTTG
CCGCGGCCGCCGTCCCGGCTGCTGGTACTTGCAAGGCCCGTGCCAGCAGC
CCTGCCTTCACCGCCAGACTCGCTAGCAGGTAAAGGCTACTACTGCTGTA
CCGCCTGTAGAGCACGGCAATGTCACGGCGATTGTTTCGTTGCAACATAC
CATATGCATAATAATAGTAATATCTACCACGACTCTTCTAAAACGTTTTG
CTGGACACACTGCTGCTCCTGCTGTGTACCGCTGAAGACTCCCATTGGAC
CCCCTCTCTTCAGTCTTCCCCATATGCAGCTCCCAAGCAAAACGCGAACG
GATAGTTCTTGGATATGATGATCGCAGGAGTCTTAGCGGCCGGCGATGAA
AGGTCGGAAACTCTGTTGGCGGGGTCAAGTTTGAGTTTTCCTTTCCAAAT
GTTCTGTACTCGCAGTTCAACTGCAATTTGAACATCCGGTGCCCACCTTG
CTCGCCCACACCCTCGGGGCAGCAATTGTACTGCGCCACCACCGTACCTA
CAAAAGACACCAGCCTTCGCAGCTGCGAAGGCCCCTCGGTACCAGGATTT
CAATTCCCGGCCGTGATTCACTTGCGCTTCCCTGTCGCTCGCACCAAAAA
TACTCCATCACGAAAGCCCTTGTTATGTGTGTGTGTGTGTTTTTCGTCCC
ATTTATTTTTGCGATAGTCCCTTTCCGATCAAGGCGAGACGTGTACTACA
CGTTGCGGTGTATTTAGAGTACTACACTAGTTCAGTGTATTTTTCTGTAC
AACTACTGTAGAACCAACCGGGGTCACACAGGAGGGGGTAAACATTGGGG
CTTTTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCGG
TGCTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTTCCCTC
GTCAACGTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTATGT
TTTCGCTTTCACCTGCAAAGTCGCAAAAGAATCACCTTTGCTTGGAATTG
AACTCCAGACTTTGCTGCTAGTGGTTTCGAGGATAAACCACTAGTAGTCC
ACCGGGGCGACCGGCTCGTTATATGTATCACAAAAGGGAGTTGGTTGTCT
GTCCATCTATTTCACTTCTGCAACGTTTGCCATTCCCCGATGCCTCCCAC
TGACTGAATGCACAGCAGCCATACCTCCATCCAACCATATCCTGCGTAGA
GCAAGGGAAATAGGCGCACGGATGGATTGTCCCTCGGCGCTCAGTTTTGT
CTACTCATCTGTTGTACGGACGCGGGGGGGCGGTAGCTTGCAAGTTACAA
GTTACAGCAGTAATTATACTTCGAAGTATTGTAATAGTACCAGGTTTACC
CGGCGTAGCGTTGTTGTTTGTTGTTTGTTGTTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTTGTAGTGTACAATACATTAATGATGCTATTCCCACGCGCGCCTGTTCA
TTCTTCTGCGTCGACTCACCACATTCTATGCCCGTATCAACACGCGTGTA
TGTCCTTCGCAGTATGTCCTTCGCAGTAGCTTCTCGCACTATTATACTGC
TGTGGAAATAGACTCACGCGGGTTCCCCCGCCTCGTTGGGGCGTACAGAC
CTGTCGTAACTCTCCGGTTGGTTTTATCACTGGTGCCGTGAATTATTGTA
CCGCAGTGTCTCTGAGAACGCCCCCGGGGGAGGGGAGCAAACTTCGCGGC
CAGTATTGATATTTTCACCGCAACGGAGAGGGTGCGGTGTGCGATGTAAC
GAACTAATCTTTTGGGGAATTTAATTCGTCATCTTCCCAACGGCGCATCG
CTCAGGGTAGGCACATATTACATAAACTCCCAAACTGCCGCGAAGGGGAG
TGAATCAGCGATTCTTGCTTGGCTTGAGCAAGTGGAAAGCTAGACTACTG
CTGGTGCATCCGGATCCGGGACTACTGCTGCCACCACGTAGATACCGATC
AAGTGCCAAAAAGAGAGAGCCGCCCTCGATCACGCAAATCAAGAATCGTC
TCGTCTCGTCTCGTCTCGCGCCGAAGTCACAATGTTGTCATATCTAAACC
CATCTAATGATACATGCCTTCCCTCCTCCTTCTTGGGAATCTCGTTCTTC
CTTTGCCCAGATCACCACCAATGGGAGCATCGCCACCACTACCACCACTA
CCGGCAGCCTTCGCTTTCGCACGGCCACGGCATGCCCTCAGCCTCGGCGG
GCAGCGACACCCACCACGACAGCGACGGCGACGGCGTCACCAGCAACGAA
GACAAAGCCGGGCGCCGCGCATGCTGTGCTCTTCCCCCTCTTTTTCTTCT
GAGCGGCCGGGGCTGGTGTCGAGAGAGCAACTGTTGGCGGCCCCCTGGCA
GAGATCTATCGGTGCAGCATCGTTTTCTCATTCTAGTTCTTGT
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Coding sequence (CDS) from alignment at C-linearis_contig95:207538..210230+

>mRNA_C-linearis_contig95.16971.1 ID=mRNA_C-linearis_contig95.16971.1|Name=mRNA_C-linearis_contig95.16971.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at C-linearis_contig95:207538..210230+ (Chordaria linearis ClinC8C monoicous)
ATGTGGATGTCGGTATCGATGTGGCCGGTGCTGTGCTGGACCTGCCTTGC
CGCGGCCGCCGTCCCGGCTGCTGGTACTTGCAAGGCCCGTGCCAGCAGCC
CTGCCTTCACCGCCAGACTCGCTAGCAGATGTGGATGTCGGTATCGATGT
GGCCGGTGCTGTGCTGGACCTGCCTTGCCGCGGCCGCCGTCCCGGCTGCT
GGTACTTGCAAGGCCCGTGCCAGCAGCCCTGCCTTCACCGCCAGACTCGC
TAGCAGATCACCACCAATGGGAGCATCGCCACCACTACCACCACTACCGG
CAGCCTTCGCTTTCGCACGGCCACGGCATGCCCTCAGCCTCGGCGGGCAG
CGACACCCACCACGACAGCGACGGCGACGGCGTCACCAGCAACGAAGACA
AAGCCGGGCGCCGCGCATGCTGTGCTCTTCCCCCTCTTTTTCTTCTGAGC
GGCCGGGGCTGGTGTCGAGAGAGCAACTGTTGGCGGCCCCCTGGCAGAGA
TCTATCGGTGCAGCATCGTTTTCTCATTCTAGTTCTTGTATCACCACCAA
TGGGAGCATCGCCACCACTACCACCACTACCGGCAGCCTTCGCTTTCGCA
CGGCCACGGCATGCCCTCAGCCTCGGCGGGCAGCGACACCCACCACGACA
GCGACGGCGACGGCGTCACCAGCAACGAAGACAAAGCCGGGCGCCGCGCA
TGCTGTGCTCTTCCCCCTCTTTTTCTTCTGAGCGGCCGGGGCTGGTGTCG
AGAGAGCAACTGTTGGCGGCCCCCTGGCAGAGATCTATCGGTGCAGCATC
GTTTTCTCATTCTAGTTCTTGT
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