Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | chloroplast |
Exons | 2 |
Model size | 614 |
Cds size | 411 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930807.719925-UTR-C-linearis_contig95:207537..207738 | 1622930807.719925-UTR-C-linearis_contig95:207537..207738 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig95 207538..207738 + |
1690881260.3686562-UTR-C-linearis_contig95:207537..207738 | 1690881260.3686562-UTR-C-linearis_contig95:207537..207738 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig95 207538..207738 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930807.7353015-CDS-C-linearis_contig95:207738..207866 | 1622930807.7353015-CDS-C-linearis_contig95:207738..207866 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 207739..207866 + |
1690881260.3780706-CDS-C-linearis_contig95:207738..207866 | 1690881260.3780706-CDS-C-linearis_contig95:207738..207866 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 207739..207866 + |
1622930807.751239-CDS-C-linearis_contig95:209947..210230 | 1622930807.751239-CDS-C-linearis_contig95:209947..210230 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 209948..210230 + |
1690881260.3872697-CDS-C-linearis_contig95:209947..210230 | 1690881260.3872697-CDS-C-linearis_contig95:209947..210230 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig95 209948..210230 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16971.1 >prot_C-linearis_contig95.16971.1 ID=prot_C-linearis_contig95.16971.1|Name=mRNA_C-linearis_contig95.16971.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=137bp
MWMSVSMWPVLCWTCLAAAAVPAAGTCKARASSPAFTARLASRSPPMGAS PPLPPLPAAFAFARPRHALSLGGQRHPPRQRRRRRHQQRRQSRAPRMLCS SPSFSSERPGLVSREQLLAAPWQRSIGAASFSHSSSC back to topmRNA from alignment at C-linearis_contig95:207538..210230+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig95.16971.1 ID=mRNA_C-linearis_contig95.16971.1|Name=mRNA_C-linearis_contig95.16971.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2693bp|location=Sequence derived from alignment at C-linearis_contig95:207538..210230+ (Chordaria linearis ClinC8C monoicous) AGCGAGATGAAACAAAAGACAAAAGACAGCGACGAGCGTGCAGTGTGACT
GCTACGGAGAAGCACCTTGTTACTACTTGGCGGGCGTGGTAGGAAGAGCG
CTTGCTGTTCCGACGGAGGGGAAAGCCTGCAGTGTCAACTTCCCTTCAAG
CGAGGGAGCAGACAGAGAAGGAAAGTCGGCTTCCTCCTCCTCCTCCTGCT
GATGTGGATGTCGGTATCGATGTGGCCGGTGCTGTGCTGGACCTGCCTTG
CCGCGGCCGCCGTCCCGGCTGCTGGTACTTGCAAGGCCCGTGCCAGCAGC
CCTGCCTTCACCGCCAGACTCGCTAGCAGGTAAAGGCTACTACTGCTGTA
CCGCCTGTAGAGCACGGCAATGTCACGGCGATTGTTTCGTTGCAACATAC
CATATGCATAATAATAGTAATATCTACCACGACTCTTCTAAAACGTTTTG
CTGGACACACTGCTGCTCCTGCTGTGTACCGCTGAAGACTCCCATTGGAC
CCCCTCTCTTCAGTCTTCCCCATATGCAGCTCCCAAGCAAAACGCGAACG
GATAGTTCTTGGATATGATGATCGCAGGAGTCTTAGCGGCCGGCGATGAA
AGGTCGGAAACTCTGTTGGCGGGGTCAAGTTTGAGTTTTCCTTTCCAAAT
GTTCTGTACTCGCAGTTCAACTGCAATTTGAACATCCGGTGCCCACCTTG
CTCGCCCACACCCTCGGGGCAGCAATTGTACTGCGCCACCACCGTACCTA
CAAAAGACACCAGCCTTCGCAGCTGCGAAGGCCCCTCGGTACCAGGATTT
CAATTCCCGGCCGTGATTCACTTGCGCTTCCCTGTCGCTCGCACCAAAAA
TACTCCATCACGAAAGCCCTTGTTATGTGTGTGTGTGTGTTTTTCGTCCC
ATTTATTTTTGCGATAGTCCCTTTCCGATCAAGGCGAGACGTGTACTACA
CGTTGCGGTGTATTTAGAGTACTACACTAGTTCAGTGTATTTTTCTGTAC
AACTACTGTAGAACCAACCGGGGTCACACAGGAGGGGGTAAACATTGGGG
CTTTTTTTCTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCGG
TGCTTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCATCCCTTTCCCTC
GTCAACGTGCTAAGTCGAAGTTTGGTACTCACGAGCTTTTTCAGCTATGT
TTTCGCTTTCACCTGCAAAGTCGCAAAAGAATCACCTTTGCTTGGAATTG
AACTCCAGACTTTGCTGCTAGTGGTTTCGAGGATAAACCACTAGTAGTCC
ACCGGGGCGACCGGCTCGTTATATGTATCACAAAAGGGAGTTGGTTGTCT
GTCCATCTATTTCACTTCTGCAACGTTTGCCATTCCCCGATGCCTCCCAC
TGACTGAATGCACAGCAGCCATACCTCCATCCAACCATATCCTGCGTAGA
GCAAGGGAAATAGGCGCACGGATGGATTGTCCCTCGGCGCTCAGTTTTGT
CTACTCATCTGTTGTACGGACGCGGGGGGGCGGTAGCTTGCAAGTTACAA
GTTACAGCAGTAATTATACTTCGAAGTATTGTAATAGTACCAGGTTTACC
CGGCGTAGCGTTGTTGTTTGTTGTTTGTTGTTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTTGTAGTGTACAATACATTAATGATGCTATTCCCACGCGCGCCTGTTCA
TTCTTCTGCGTCGACTCACCACATTCTATGCCCGTATCAACACGCGTGTA
TGTCCTTCGCAGTATGTCCTTCGCAGTAGCTTCTCGCACTATTATACTGC
TGTGGAAATAGACTCACGCGGGTTCCCCCGCCTCGTTGGGGCGTACAGAC
CTGTCGTAACTCTCCGGTTGGTTTTATCACTGGTGCCGTGAATTATTGTA
CCGCAGTGTCTCTGAGAACGCCCCCGGGGGAGGGGAGCAAACTTCGCGGC
CAGTATTGATATTTTCACCGCAACGGAGAGGGTGCGGTGTGCGATGTAAC
GAACTAATCTTTTGGGGAATTTAATTCGTCATCTTCCCAACGGCGCATCG
CTCAGGGTAGGCACATATTACATAAACTCCCAAACTGCCGCGAAGGGGAG
TGAATCAGCGATTCTTGCTTGGCTTGAGCAAGTGGAAAGCTAGACTACTG
CTGGTGCATCCGGATCCGGGACTACTGCTGCCACCACGTAGATACCGATC
AAGTGCCAAAAAGAGAGAGCCGCCCTCGATCACGCAAATCAAGAATCGTC
TCGTCTCGTCTCGTCTCGCGCCGAAGTCACAATGTTGTCATATCTAAACC
CATCTAATGATACATGCCTTCCCTCCTCCTTCTTGGGAATCTCGTTCTTC
CTTTGCCCAGATCACCACCAATGGGAGCATCGCCACCACTACCACCACTA
CCGGCAGCCTTCGCTTTCGCACGGCCACGGCATGCCCTCAGCCTCGGCGG
GCAGCGACACCCACCACGACAGCGACGGCGACGGCGTCACCAGCAACGAA
GACAAAGCCGGGCGCCGCGCATGCTGTGCTCTTCCCCCTCTTTTTCTTCT
GAGCGGCCGGGGCTGGTGTCGAGAGAGCAACTGTTGGCGGCCCCCTGGCA
GAGATCTATCGGTGCAGCATCGTTTTCTCATTCTAGTTCTTGT back to topCoding sequence (CDS) from alignment at C-linearis_contig95:207538..210230+ >mRNA_C-linearis_contig95.16971.1 ID=mRNA_C-linearis_contig95.16971.1|Name=mRNA_C-linearis_contig95.16971.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at C-linearis_contig95:207538..210230+ (Chordaria linearis ClinC8C monoicous) ATGTGGATGTCGGTATCGATGTGGCCGGTGCTGTGCTGGACCTGCCTTGC CGCGGCCGCCGTCCCGGCTGCTGGTACTTGCAAGGCCCGTGCCAGCAGCC CTGCCTTCACCGCCAGACTCGCTAGCAGATGTGGATGTCGGTATCGATGT GGCCGGTGCTGTGCTGGACCTGCCTTGCCGCGGCCGCCGTCCCGGCTGCT GGTACTTGCAAGGCCCGTGCCAGCAGCCCTGCCTTCACCGCCAGACTCGC TAGCAGATCACCACCAATGGGAGCATCGCCACCACTACCACCACTACCGG CAGCCTTCGCTTTCGCACGGCCACGGCATGCCCTCAGCCTCGGCGGGCAG CGACACCCACCACGACAGCGACGGCGACGGCGTCACCAGCAACGAAGACA AAGCCGGGCGCCGCGCATGCTGTGCTCTTCCCCCTCTTTTTCTTCTGAGC GGCCGGGGCTGGTGTCGAGAGAGCAACTGTTGGCGGCCCCCTGGCAGAGA TCTATCGGTGCAGCATCGTTTTCTCATTCTAGTTCTTGTATCACCACCAA TGGGAGCATCGCCACCACTACCACCACTACCGGCAGCCTTCGCTTTCGCA CGGCCACGGCATGCCCTCAGCCTCGGCGGGCAGCGACACCCACCACGACA GCGACGGCGACGGCGTCACCAGCAACGAAGACAAAGCCGGGCGCCGCGCA TGCTGTGCTCTTCCCCCTCTTTTTCTTCTGAGCGGCCGGGGCTGGTGTCG AGAGAGCAACTGTTGGCGGCCCCCTGGCAGAGATCTATCGGTGCAGCATC GTTTTCTCATTCTAGTTCTTGT back to top
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