mRNA_C-linearis_contig95.16969.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16969.1
Unique NamemRNA_C-linearis_contig95.16969.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.690e-21
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:    1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            GKEK R+T+VL+V  DGKKV PRII+KGTPF+      KG ST P KN++ ++  PANR + D+PA G+  GVQ+ SW D  + + W++
Sbjct:  149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWIS 237
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.100e-20
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            GKEK R+T+VL+V  DGKKV PRII+KGTPF+      KG ST P KN++ ++  PANR +  +PA G+  GVQ  SW D  + + W++
Sbjct:   10 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWIS 98
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.470e-19
Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            GKEK R+T+VL+V  DGKKV PRII+KGTPF       KG ST P KN++ ++  PANR +  +PA G+  GVQ+ SW D  + + W++
Sbjct:  149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWIS 237
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5L819_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L819_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 3.550e-19
Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            GKEK R+T+VL+V  DGKKV PR I+KGTPF       KG ST P KN++ ++  PANR +  YPA G+  GVQ+ SW D  + + W++
Sbjct:  300 GKEKERFTLVLAVMADGKKVSPRNIFKGTPFFPPTMSGKGKSTLPRKNSVAWEIHPANRAKHGYPANGMSFGVQEKSWSDQRECNGWIS 388
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.600e-19
Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            G EK R+T+VL+V  DGKKV PRII++GTPF+      KG ST+P KN + ++  PANR +  +PA G+  GVQ+ SW D  + + W++
Sbjct:  344 GNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWIS 432
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.070e-18
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            GKE+ R+ +VL+V  DGKKV PRI +KGTPF       KG ST P KN++ ++  PANR +  +PA GV  GVQ+ SW D  + + W++
Sbjct:   30 GKEQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWIS 118
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5JUV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV9_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.810e-18
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    4 KEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKAS 228
            KEK R+T+VL+V  DGKKV PRII+KGTPF+      KG ST P KN++T++  PANR +  YP  G+ +GVQ+ S
Sbjct:   23 KEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVTWEIHPANRAKHGYPPNGMSVGVQEKS 98
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.970e-16
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            G+EK R+T+VL+V  DGKKV  RII+ GTPF+      KG ST P KN++ ++  P NR +  +PA G+  GVQ+ SW D  + + W +
Sbjct:   83 GEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTS 171
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:   25 VVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            +VL+V  DGKKV PRII+KGTPF S      G ST P KN++ ++  PANR +  +PA G+  GVQ+ SW D  + + W +
Sbjct:    2 LVLAVMADGKKVSPRIIFKGTPFTSPTVSGNGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWTS 82
[Close]
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.620e-13
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   34 SVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
            +V  DGKKV PR I+KGTPF+      KG ST P KN++ ++  P NR +  +PA G+  GVQ+ SW D  + + W++
Sbjct:  457 AVMADGKKVSPRTIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPVNRVKHGHPANGMSFGVQEKSWSDQRECNGWIS 534
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE4.690e-2150.56DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE4.100e-2049.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.470e-1949.44DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L819_9PHAE3.550e-1949.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT8_9PHAE4.600e-1947.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT06_9PHAE1.070e-1847.19DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUV9_9PHAE7.810e-1853.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KII4_9PHAE1.970e-1644.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE2.210e-1546.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRF0_9PHAE1.620e-1343.59DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:193741..194018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FXD3
Preferred namePOGK
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG3105@1,KOG3105@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930811.8806767-CDS-C-linearis_contig95:193740..1940161622930811.8806767-CDS-C-linearis_contig95:193740..194016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 193741..194016 +
1690881262.6449976-CDS-C-linearis_contig95:193740..1940161690881262.6449976-CDS-C-linearis_contig95:193740..194016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 193741..194016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16969.1prot_C-linearis_contig95.16969.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 193741..194016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16969.1

>prot_C-linearis_contig95.16969.1 ID=prot_C-linearis_contig95.16969.1|Name=mRNA_C-linearis_contig95.16969.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=92bp
GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTKKGASTKPGKNTLT
YQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFM
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mRNA from alignment at C-linearis_contig95:193741..194018+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16969.1 ID=mRNA_C-linearis_contig95.16969.1|Name=mRNA_C-linearis_contig95.16969.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=278bp|location=Sequence derived from alignment at C-linearis_contig95:193741..194018+ (Chordaria linearis ClinC8C monoicous)
GGGAAGGAGAAGCTGAGGTACACCGTGGTGTTATCTGTGCGTGGTGACGG
GAAGAAGGTGAAGCCTCGCATCATCTACAAGGGCACCCCGTTCGTCTCCA
AGAAGACCAAGAAGGGTGCGTCGACCAAGCCAGGCAAGAACACTCTGACG
TACCAGCACATGCCGGCCAACCGAACGCAGTTCGACTACCCGGCGGGCGG
CGTAGGCCTCGGGGTGCAGAAGGCTTCATGGTGCGACACGACCCAGACCG
ACGCGTGGCTAACGGAGGAGTTCATGCG
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Coding sequence (CDS) from alignment at C-linearis_contig95:193741..194018+

>mRNA_C-linearis_contig95.16969.1 ID=mRNA_C-linearis_contig95.16969.1|Name=mRNA_C-linearis_contig95.16969.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at C-linearis_contig95:193741..194018+ (Chordaria linearis ClinC8C monoicous)
GGGAAGGAGAAGCTGAGGTACACCGTGGTGTTATCTGTGCGTGGTGACGG
GAAGAAGGTGAAGCCTCGCATCATCTACAAGGGCACCCCGTTCGTCTCCA
AGAAGACCAAGAAGGGTGCGTCGACCAAGCCAGGCAAGAACACTCTGACG
TACCAGCACATGCCGGCCAACCGAACGCAGTTCGACTACCCGGCGGGCGG
CGTAGGCCTCGGGGTGCAGAAGGCTTCATGGTGCGACACGACCCAGACCG
ACGCGTGGCTAACGGAGGAGTTCATGGGGAAGGAGAAGCTGAGGTACACC
GTGGTGTTATCTGTGCGTGGTGACGGGAAGAAGGTGAAGCCTCGCATCAT
CTACAAGGGCACCCCGTTCGTCTCCAAGAAGACCAAGAAGGGTGCGTCGA
CCAAGCCAGGCAAGAACACTCTGACGTACCAGCACATGCCGGCCAACCGA
ACGCAGTTCGACTACCCGGCGGGCGGCGTAGGCCTCGGGGTGCAGAAGGC
TTCATGGTGCGACACGACCCAGACCGACGCGTGGCTAACGGAGGAGTTCA
TG
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