mRNA_C-linearis_contig95.16969.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.690e-21 Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1 Query: 1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
GKEK R+T+VL+V DGKKV PRII+KGTPF+ KG ST P KN++ ++ PANR + D+PA G+ GVQ+ SW D + + W++
Sbjct: 149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWIS 237
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 4.100e-20 Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
GKEK R+T+VL+V DGKKV PRII+KGTPF+ KG ST P KN++ ++ PANR + +PA G+ GVQ SW D + + W++
Sbjct: 10 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWIS 98
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 1.470e-19 Identity = 44/89 (49.44%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
GKEK R+T+VL+V DGKKV PRII+KGTPF KG ST P KN++ ++ PANR + +PA G+ GVQ+ SW D + + W++
Sbjct: 149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWIS 237
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5L819_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L819_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 3.550e-19 Identity = 44/89 (49.44%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
GKEK R+T+VL+V DGKKV PR I+KGTPF KG ST P KN++ ++ PANR + YPA G+ GVQ+ SW D + + W++
Sbjct: 300 GKEKERFTLVLAVMADGKKVSPRNIFKGTPFFPPTMSGKGKSTLPRKNSVAWEIHPANRAKHGYPANGMSFGVQEKSWSDQRECNGWIS 388
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 4.600e-19 Identity = 42/89 (47.19%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
G EK R+T+VL+V DGKKV PRII++GTPF+ KG ST+P KN + ++ PANR + +PA G+ GVQ+ SW D + + W++
Sbjct: 344 GNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWIS 432
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.070e-18 Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
GKE+ R+ +VL+V DGKKV PRI +KGTPF KG ST P KN++ ++ PANR + +PA GV GVQ+ SW D + + W++
Sbjct: 30 GKEQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWIS 118
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5JUV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV9_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 7.810e-18 Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1 Query: 4 KEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKAS 228
KEK R+T+VL+V DGKKV PRII+KGTPF+ KG ST P KN++T++ PANR + YP G+ +GVQ+ S
Sbjct: 23 KEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVTWEIHPANRAKHGYPPNGMSVGVQEKS 98
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 1.970e-16 Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1 Query: 1 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
G+EK R+T+VL+V DGKKV RII+ GTPF+ KG ST P KN++ ++ P NR + +PA G+ GVQ+ SW D + + W +
Sbjct: 83 GEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTS 171
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15 Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1 Query: 25 VVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
+VL+V DGKKV PRII+KGTPF S G ST P KN++ ++ PANR + +PA G+ GVQ+ SW D + + W +
Sbjct: 2 LVLAVMADGKKVSPRIIFKGTPFTSPTVSGNGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWTS 82
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.620e-13 Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 34 SVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLT 264
+V DGKKV PR I+KGTPF+ KG ST P KN++ ++ P NR + +PA G+ GVQ+ SW D + + W++
Sbjct: 457 AVMADGKKVSPRTIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPVNRVKHGHPANGMSFGVQEKSWSDQRECNGWIS 534 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16969.1 >prot_C-linearis_contig95.16969.1 ID=prot_C-linearis_contig95.16969.1|Name=mRNA_C-linearis_contig95.16969.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=92bp GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTKKGASTKPGKNTLTback to top mRNA from alignment at C-linearis_contig95:193741..194018+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16969.1 ID=mRNA_C-linearis_contig95.16969.1|Name=mRNA_C-linearis_contig95.16969.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=278bp|location=Sequence derived from alignment at C-linearis_contig95:193741..194018+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:193741..194018+ >mRNA_C-linearis_contig95.16969.1 ID=mRNA_C-linearis_contig95.16969.1|Name=mRNA_C-linearis_contig95.16969.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at C-linearis_contig95:193741..194018+ (Chordaria linearis ClinC8C monoicous)back to top |