mRNA_C-linearis_contig95.16966.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: D8LLI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI9_ECTSI) HSP 1 Score: 973 bits (2515), Expect = 0.000e+0 Identity = 631/1115 (56.59%), Postives = 724/1115 (64.93%), Query Frame = 1
Query: 1 AMHSVYNMG--EFGKPNFGDLGKPMITVDVARLQTELRAMHQRIEMLEVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTTETRAHVDELDGASVADDSTAGTNVE--PPSPLLRSATGLRKKNAAANAALHAEVRELSTRIESLAASSSRREKAQSVRDKAVALSRSMEIKRVQLAIESRVTSDDLQLTVSATDDKIAAVQSSLDSALSDRFRRMQDV----MASLLGMVQALTQQHGKGMHGGGSHALMRGMTSGAGXXXXXXXXXXXXXXXXXXXXXXKASFERAVTEVLNRVMEDAEKKMGGRRGGVQNAAFQSLQEDYEAFKEHMEEKADRQDAISSALEGAQTRLEDAEANIVALTEELEHSAQETQEGMDAASERLSKLDAQLLTAASVAAEATRECAAIRVMVGESRREVQAEARQDAEAIAGRAEGRVKAEVNKVRGDARAATESLASELKRYIKRAEDEAEGYQGAIAATRALSEKATSGAAAAAARAEESDALLQRAERRIGQRLDEAIQNQATVAEDTLERVASGESEVARVESELRRLLSSNKAGIDNLRTAQTQQGISSERVLEDLRAEVQESLATSIIE---------VRATALRIARVSGPPEASSVGSRTGGGXVTFXXXXXXXXXXXXXXXXXXXXXXXGRPSLLSLGAALRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKACLACDRPFMPSATGHPGPTPPGGIAGAAVEPDGLPEENSHITKDTFRPHTSHGRLGSPSRSSSVELFEPQRSIHSVMSGGRSSPESPHVYRGGFKLPKHLKSPLHLPGEGEDGSAFGIGHASPLLHKCPSMTGLDSHND-GRPSTSGGVRRKRRLPS--NYHPSPPATASGGRMITGGLDGGG-SIVSAFTVRTNDGAVCGGANDPAFAFFAGGESGQRQVLPYYAKSHTLSRPSTPHENSVRLL 3282
+ +SVY MG + PNF DLGKP +TVDV RLQ ELRA+HQR+E LEVAA V DELDG +ADD T T P SP++RSATGLRKK AAA+AA+ AEVR+LS R+E+LA+S RREKAQ +R+K AL++SMEIKR+Q+AIESRVTSDDLQL VSA DDKI AVQSS++SALSDRFRRMQDV MASLL MVQ LTQ + G G + RG SG G XXXXXXXXXXXXX +F +AV + + RV+++ G +G V+ A F+SLQEDY EKADRQDAISS+LE AQ EAN+ AL EELEHS+Q+T CAA+R++VG+SRRE QA+ARQ+AEAI RA +ATE + SELKR+IK++EDEAEG+QGA+A TRALSEKA +GA AAAARA+E DALLQ+AE R+G+RLD+A+QNQ T EDTLERVA+GESE+AR ESELRRL++SN A I +LRT Q+ G SSE+ E LR EVQ++L T +I+ R + GG R SL LG ALRRQ ED A V TLQRS VG VTVLRKMEA VHALSTKDLFWKAVD KL AHQRAV ++CL VE ATV++RS+ITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKL+ PEQTGQDWDERVEFLRQTQMRRFL DCR+ LDKTAPE RTNFNGEEIRGKF+GKLSD+L+VALSKYSP TPGATLFGKIKLK NSHITKDTFRPHTSHGRLGSPSRS S+ELFEP SIHSVMSG RSS SPHVYRGGFKLPKHLKSPLHLP +GED SAFGIGHASPLLHK SMTGL SHN+ GRPSTSGGVR+KRR P+ +H S P G G DGGG SI+SAFT RT A A + + +PY+A SHT SRP H+ SVRLL
Sbjct: 7 SQYSVYPMGAAKAAAPNFSDLGKPTVTVDVTRLQAELRALHQRLEFLEVAA---QVAAVEHAKDQDPDGGSASSTAESIPSAVAAGRETRPDELDGGCIADDLTTETKAGEMPHSPVMRSATGLRKKAAAASAAMQAEVRDLSDRLEALASSCKRREKAQGIREKTNALAQSMEIKRIQMAIESRVTSDDLQLAVSAADDKIVAVQSSVESALSDRFRRMQDVVHQQMASLLSMVQGLTQSQAR-RKGSGPYVNARGNLSGGGYXXXXXXXXXXXXXASEAE-----TFNKAVKDAVERVLQEGRISGGSGQGDVKMADFESLQEDYXXXXXXXXEKADRQDAISSSLEDAQXXXXXXEANLSALAEELEHSSQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAALRLLVGDSRREGQADARQEAEAITARAXXXXXXXXXXXXXXXXSATEKVGSELKRHIKKSEDEAEGFQGAVAGTRALSEKAMAGATAAAARADECDALLQKAETRMGKRLDKAVQNQTTAIEDTLERVAAGESELARAESELRRLIASNGAEIMDLRTGQSVLGESSEQATEQLREEVQDALTTMVIDQDFIDSPSSXXXXXXXXXRTGXXXXXXGSDNSRGGVRFEASHGGGSGNNYRSNDFVDRSASDVARLSLAHLGTALRRQGEDAAQMVSTLQRSSVGIVTVLRKMEAGVHALSTKDLFWKAVDVKLAAHQRAVGEVCLDVEDATVSRRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLDTPEQTGQDWDERVEFLRQTQMRRFLKDCRDALDKTAPEVRTNFNGEEIRGKFMGKLSDALKVALSKYSPTTPGATLFGKIKLK----------------------------------------NSHITKDTFRPHTSHGRLGSPSRSGSIELFEPHSSIHSVMSGSRSSSHSPHVYRGGFKLPKHLKSPLHLP-DGEDQSAFGIGHASPLLHKSQSMTGLGSHNNNGRPSTSGGVRQKRRPPNAGKFHTSSPPATGDGDPDAGLQDGGGNSIISAFTARTEYAAATPNAGESGAERLGFDDPPAGTSMPYFATSHTPSRPGVQHDGSVRLL 1071
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: A0A836CLL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL5_9STRA) HSP 1 Score: 198 bits (504), Expect = 3.570e-48 Identity = 139/337 (41.25%), Postives = 180/337 (53.41%), Query Frame = 1
Query: 1966 LRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATV------------------AKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKACLACDRPFMPSATGHPGPT--PPGGIAGAAVEPDGLPEENSHITKDTFRPHTSHGRLGSPSRSSS--VEL------FEPQRSIHSVMSG----------GRSSPESP--HVYRGGFKLPKH 2856
LR + A + LQRSGV LR++E A +L++K LFW++ D KL AH V+ + LQVE A A L+ +A LAG+ QRVAKL+A KADYEVIR +++ E P G DWD RVE LR + +F D R L K AP E RG+FL ++ +LRVALSKY P TPGATLFG++++ A+AC+ACDRPF +A G P PPGG AA +P LP E S ++ FRP T GSP++ S VE+ E + +H G S + P +VYRGGFKLPKH
Sbjct: 699 LRAHAAEGADALEALQRSGVANALALRRVETAFQSLASKGLFWESTDIKLAAHVEEVARVSLQVEAAAXXXXXXXXXXXXXXXXXXSAPPGAPHLAPDALRVLAGNTQRVAKLIAAKADYEVIRLVSRAEDPGAEGHDWDARVETLRGAFLAQFSADARNVLRKRAPHQGPA--AEAARGRFLARVDGALRVALSKYRPTTPGATLFGRVRVVAQACVACDRPFATAADGLPCAVSAPPGGNH-AAAKPPALPTETSIAVRNNFRPSTC---TGSPTKRSGGGVEVNGDDGDVESEVPLHVAPFGFGXXXXXXXXXXSDVQKPQAYVYRGGFKLPKH 1029
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: A0A7S3USE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE9_HETAK) HSP 1 Score: 142 bits (358), Expect = 2.840e-34 Identity = 95/242 (39.26%), Postives = 137/242 (56.61%), Query Frame = 1
Query: 1933 GRPSLLSLGAA-LRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEI----RGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKACLACDRPFMPSATGHPGPTPPGGIAGAA 2643
G+ +LL G A LRR+ +RS VG + R+ E V A+++K LFW+A+ +L AH + D C ++E + A + +LS EAQ LAG+ QRVAKL+ +AD+E IR+++ PE +DWD +V+ LRQ F T A A+ + +G+ + R +FL KL ++R+ALSK++ PG TLFGK + AC+ACDRPF T PGP G+AGAA
Sbjct: 12 GQQALLEGGLAELRRRARAAEESCGRTERSSVGLAALCRQAEGQVRAIASKSLFWEALQARLQAHLKGFGDRCCELEANSSAAHA-FSLSPEAQRYLAGNAQRVAKLVGQRADFETIRQVSTSRHPED--EDWDTKVDQLRQKYRAEF------TQGVEAYAAKQHRSGDTVVLDTRRRFLAKLDQAVRLALSKFNKVQPGLTLFGKRSAQVPACMACDRPF----TSDPGP----GLAGAA 236
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: D8LS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS35_ECTSI) HSP 1 Score: 102 bits (253), Expect = 2.480e-18 Identity = 63/178 (35.39%), Postives = 102/178 (57.30%), Query Frame = 1
Query: 1954 LGAALRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRV 2487
+ A+R Q + ++R+ + +++K+E ++ LS++DLFW+ V TKL AH A +D +VE AT ++ + L+ E Q +AG+ QRVAKL+ KAD+EVI++L E+ QDWD RV+ +R + + F+ + R LD+ P + F G R +F KL L+V
Sbjct: 545 VATAVREQQQRREESSRRVERANLSLTLLVKKLERSLFVLSSRDLFWEEVGTKLKAHAEAFADASCRVE-ATSEEQDRFVLTVELQQYIAGNTQRVAKLICQKADFEVIQKLTASTNIEKGAQDWDRRVQSMRGSFLEHFVANARRYLDRKYP-SHGPF-GARNRDRFFVKLEQGLKV 719
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: W7TB27_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB27_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.560e-13 Identity = 67/233 (28.76%), Postives = 110/233 (47.21%), Query Frame = 1
Query: 1939 PSLLSLGAALRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDIC-----------------LQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKA-CLACDRPF 2583
PS+ L L Q ++ ++L L++ G ++ +V AL T+ W A+D +L + ++ C LQ++G + L KE +A R+AK +A+KADY++IR + + T D ++ R+T + RFL + ++ EI +F KL ++R+ALSK+S G +LFGKI L+A+A CLAC+R F
Sbjct: 72 PSIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQG------RGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDT-LTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQF 297 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16966.1 >prot_C-linearis_contig95.16966.1 ID=prot_C-linearis_contig95.16966.1|Name=mRNA_C-linearis_contig95.16966.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1093bp MHSVYNMGEFGKPNFGDLGKPMITVDVARLQTELRAMHQRIEMLEVAAVVback to top mRNA from alignment at C-linearis_contig95:116719..131133+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16966.1 ID=mRNA_C-linearis_contig95.16966.1|Name=mRNA_C-linearis_contig95.16966.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14415bp|location=Sequence derived from alignment at C-linearis_contig95:116719..131133+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:116719..131133+ >mRNA_C-linearis_contig95.16966.1 ID=mRNA_C-linearis_contig95.16966.1|Name=mRNA_C-linearis_contig95.16966.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6558bp|location=Sequence derived from alignment at C-linearis_contig95:116719..131133+ (Chordaria linearis ClinC8C monoicous)back to top |