mRNA_C-linearis_contig95.16966.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: D8LLI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI9_ECTSI) HSP 1 Score: 973 bits (2515), Expect = 0.000e+0 Identity = 631/1115 (56.59%), Postives = 724/1115 (64.93%), Query Frame = 1 Query: 1 AMHSVYNMG--EFGKPNFGDLGKPMITVDVARLQTELRAMHQRIEMLEVAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTTETRAHVDELDGASVADDSTAGTNVE--PPSPLLRSATGLRKKNAAANAALHAEVRELSTRIESLAASSSRREKAQSVRDKAVALSRSMEIKRVQLAIESRVTSDDLQLTVSATDDKIAAVQSSLDSALSDRFRRMQDV----MASLLGMVQALTQQHGKGMHGGGSHALMRGMTSGAGXXXXXXXXXXXXXXXXXXXXXXKASFERAVTEVLNRVMEDAEKKMGGRRGGVQNAAFQSLQEDYEAFKEHMEEKADRQDAISSALEGAQTRLEDAEANIVALTEELEHSAQETQEGMDAASERLSKLDAQLLTAASVAAEATRECAAIRVMVGESRREVQAEARQDAEAIAGRAEGRVKAEVNKVRGDARAATESLASELKRYIKRAEDEAEGYQGAIAATRALSEKATSGAAAAAARAEESDALLQRAERRIGQRLDEAIQNQATVAEDTLERVASGESEVARVESELRRLLSSNKAGIDNLRTAQTQQGISSERVLEDLRAEVQESLATSIIE---------VRATALRIARVSGPPEASSVGSRTGGGXVTFXXXXXXXXXXXXXXXXXXXXXXXGRPSLLSLGAALRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKACLACDRPFMPSATGHPGPTPPGGIAGAAVEPDGLPEENSHITKDTFRPHTSHGRLGSPSRSSSVELFEPQRSIHSVMSGGRSSPESPHVYRGGFKLPKHLKSPLHLPGEGEDGSAFGIGHASPLLHKCPSMTGLDSHND-GRPSTSGGVRRKRRLPS--NYHPSPPATASGGRMITGGLDGGG-SIVSAFTVRTNDGAVCGGANDPAFAFFAGGESGQRQVLPYYAKSHTLSRPSTPHENSVRLL 3282
+ +SVY MG + PNF DLGKP +TVDV RLQ ELRA+HQR+E LEVAA V DELDG +ADD T T P SP++RSATGLRKK AAA+AA+ AEVR+LS R+E+LA+S RREKAQ +R+K AL++SMEIKR+Q+AIESRVTSDDLQL VSA DDKI AVQSS++SALSDRFRRMQDV MASLL MVQ LTQ + G G + RG SG G XXXXXXXXXXXXX +F +AV + + RV+++ G +G V+ A F+SLQEDY EKADRQDAISS+LE AQ EAN+ AL EELEHS+Q+T CAA+R++VG+SRRE QA+ARQ+AEAI RA +ATE + SELKR+IK++EDEAEG+QGA+A TRALSEKA +GA AAAARA+E DALLQ+AE R+G+RLD+A+QNQ T EDTLERVA+GESE+AR ESELRRL++SN A I +LRT Q+ G SSE+ E LR EVQ++L T +I+ R + GG R SL LG ALRRQ ED A V TLQRS VG VTVLRKMEA VHALSTKDLFWKAVD KL AHQRAV ++CL VE ATV++RS+ITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKL+ PEQTGQDWDERVEFLRQTQMRRFL DCR+ LDKTAPE RTNFNGEEIRGKF+GKLSD+L+VALSKYSP TPGATLFGKIKLK NSHITKDTFRPHTSHGRLGSPSRS S+ELFEP SIHSVMSG RSS SPHVYRGGFKLPKHLKSPLHLP +GED SAFGIGHASPLLHK SMTGL SHN+ GRPSTSGGVR+KRR P+ +H S P G G DGGG SI+SAFT RT A A + + +PY+A SHT SRP H+ SVRLL
Sbjct: 7 SQYSVYPMGAAKAAAPNFSDLGKPTVTVDVTRLQAELRALHQRLEFLEVAA---QVAAVEHAKDQDPDGGSASSTAESIPSAVAAGRETRPDELDGGCIADDLTTETKAGEMPHSPVMRSATGLRKKAAAASAAMQAEVRDLSDRLEALASSCKRREKAQGIREKTNALAQSMEIKRIQMAIESRVTSDDLQLAVSAADDKIVAVQSSVESALSDRFRRMQDVVHQQMASLLSMVQGLTQSQAR-RKGSGPYVNARGNLSGGGYXXXXXXXXXXXXXASEAE-----TFNKAVKDAVERVLQEGRISGGSGQGDVKMADFESLQEDYXXXXXXXXEKADRQDAISSSLEDAQXXXXXXEANLSALAEELEHSSQDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAALRLLVGDSRREGQADARQEAEAITARAXXXXXXXXXXXXXXXXSATEKVGSELKRHIKKSEDEAEGFQGAVAGTRALSEKAMAGATAAAARADECDALLQKAETRMGKRLDKAVQNQTTAIEDTLERVAAGESELARAESELRRLIASNGAEIMDLRTGQSVLGESSEQATEQLREEVQDALTTMVIDQDFIDSPSSXXXXXXXXXRTGXXXXXXGSDNSRGGVRFEASHGGGSGNNYRSNDFVDRSASDVARLSLAHLGTALRRQGEDAAQMVSTLQRSSVGIVTVLRKMEAGVHALSTKDLFWKAVDVKLAAHQRAVGEVCLDVEDATVSRRSRITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLDTPEQTGQDWDERVEFLRQTQMRRFLKDCRDALDKTAPEVRTNFNGEEIRGKFMGKLSDALKVALSKYSPTTPGATLFGKIKLK----------------------------------------NSHITKDTFRPHTSHGRLGSPSRSGSIELFEPHSSIHSVMSGSRSSSHSPHVYRGGFKLPKHLKSPLHLP-DGEDQSAFGIGHASPLLHKSQSMTGLGSHNNNGRPSTSGGVRQKRRPPNAGKFHTSSPPATGDGDPDAGLQDGGGNSIISAFTARTEYAAATPNAGESGAERLGFDDPPAGTSMPYFATSHTPSRPGVQHDGSVRLL 1071
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: A0A836CLL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL5_9STRA) HSP 1 Score: 198 bits (504), Expect = 3.570e-48 Identity = 139/337 (41.25%), Postives = 180/337 (53.41%), Query Frame = 1 Query: 1966 LRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATV------------------AKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKACLACDRPFMPSATGHPGPT--PPGGIAGAAVEPDGLPEENSHITKDTFRPHTSHGRLGSPSRSSS--VEL------FEPQRSIHSVMSG----------GRSSPESP--HVYRGGFKLPKH 2856
LR + A + LQRSGV LR++E A +L++K LFW++ D KL AH V+ + LQVE A A L+ +A LAG+ QRVAKL+A KADYEVIR +++ E P G DWD RVE LR + +F D R L K AP E RG+FL ++ +LRVALSKY P TPGATLFG++++ A+AC+ACDRPF +A G P PPGG AA +P LP E S ++ FRP T GSP++ S VE+ E + +H G S + P +VYRGGFKLPKH
Sbjct: 699 LRAHAAEGADALEALQRSGVANALALRRVETAFQSLASKGLFWESTDIKLAAHVEEVARVSLQVEAAAXXXXXXXXXXXXXXXXXXSAPPGAPHLAPDALRVLAGNTQRVAKLIAAKADYEVIRLVSRAEDPGAEGHDWDARVETLRGAFLAQFSADARNVLRKRAPHQGPA--AEAARGRFLARVDGALRVALSKYRPTTPGATLFGRVRVVAQACVACDRPFATAADGLPCAVSAPPGGNH-AAAKPPALPTETSIAVRNNFRPSTC---TGSPTKRSGGGVEVNGDDGDVESEVPLHVAPFGFGXXXXXXXXXXSDVQKPQAYVYRGGFKLPKH 1029
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: A0A7S3USE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE9_HETAK) HSP 1 Score: 142 bits (358), Expect = 2.840e-34 Identity = 95/242 (39.26%), Postives = 137/242 (56.61%), Query Frame = 1 Query: 1933 GRPSLLSLGAA-LRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEI----RGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKACLACDRPFMPSATGHPGPTPPGGIAGAA 2643
G+ +LL G A LRR+ +RS VG + R+ E V A+++K LFW+A+ +L AH + D C ++E + A + +LS EAQ LAG+ QRVAKL+ +AD+E IR+++ PE +DWD +V+ LRQ F T A A+ + +G+ + R +FL KL ++R+ALSK++ PG TLFGK + AC+ACDRPF T PGP G+AGAA
Sbjct: 12 GQQALLEGGLAELRRRARAAEESCGRTERSSVGLAALCRQAEGQVRAIASKSLFWEALQARLQAHLKGFGDRCCELEANSSAAHA-FSLSPEAQRYLAGNAQRVAKLVGQRADFETIRQVSTSRHPED--EDWDTKVDQLRQKYRAEF------TQGVEAYAAKQHRSGDTVVLDTRRRFLAKLDQAVRLALSKFNKVQPGLTLFGKRSAQVPACMACDRPF----TSDPGP----GLAGAA 236
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: D8LS35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS35_ECTSI) HSP 1 Score: 102 bits (253), Expect = 2.480e-18 Identity = 63/178 (35.39%), Postives = 102/178 (57.30%), Query Frame = 1 Query: 1954 LGAALRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDICLQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRV 2487
+ A+R Q + ++R+ + +++K+E ++ LS++DLFW+ V TKL AH A +D +VE AT ++ + L+ E Q +AG+ QRVAKL+ KAD+EVI++L E+ QDWD RV+ +R + + F+ + R LD+ P + F G R +F KL L+V
Sbjct: 545 VATAVREQQQRREESSRRVERANLSLTLLVKKLERSLFVLSSRDLFWEEVGTKLKAHAEAFADASCRVE-ATSEEQDRFVLTVELQQYIAGNTQRVAKLICQKADFEVIQKLTASTNIEKGAQDWDRRVQSMRGSFLEHFVANARRYLDRKYP-SHGPF-GARNRDRFFVKLEQGLKV 719
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Match: W7TB27_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TB27_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 7.560e-13 Identity = 67/233 (28.76%), Postives = 110/233 (47.21%), Query Frame = 1 Query: 1939 PSLLSLGAALRRQNEDTALKVLTLQRSGVGTVTVLRKMEAAVHALSTKDLFWKAVDTKLVAHQRAVSDIC-----------------LQVEGATVAKRSKITLSKEAQACLAGDMQRVAKLMAVKADYEVIRELAKLEGPEQTGQDWDERVEFLRQTQMRRFLNDCRETLDKTAPEARTNFNGEEIRGKFLGKLSDSLRVALSKYSPATPGATLFGKIKLKAKA-CLACDRPF 2583
PS+ L L Q ++ ++L L++ G ++ +V AL T+ W A+D +L + ++ C LQ++G + L KE +A R+AK +A+KADY++IR + + T D ++ R+T + RFL + ++ EI +F KL ++R+ALSK+S G +LFGKI L+A+A CLAC+R F
Sbjct: 72 PSIPDLLTQLDVQRTESTDQLLRLEQDIEGLSGSYEQLHGSVQALVTRSNHWAALDVRLQEYHESLVKHCRHIFARSSLSSYGPDQVLQLQG------RGLLLKKETVDLIASHSYRIAKTIALKADYDIIRHNVESKDT-LTDNQCDAKILQSRETYLMRFLGGVKRAVEVGLDGEGRASGITEIITQFHSKLEQAIRLALSKFSRIHTGRSLFGKISLEAEAACLACNRQF 297 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16966.1 >prot_C-linearis_contig95.16966.1 ID=prot_C-linearis_contig95.16966.1|Name=mRNA_C-linearis_contig95.16966.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1093bp MHSVYNMGEFGKPNFGDLGKPMITVDVARLQTELRAMHQRIEMLEVAAVVback to top mRNA from alignment at C-linearis_contig95:116719..131133+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16966.1 ID=mRNA_C-linearis_contig95.16966.1|Name=mRNA_C-linearis_contig95.16966.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=14415bp|location=Sequence derived from alignment at C-linearis_contig95:116719..131133+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:116719..131133+ >mRNA_C-linearis_contig95.16966.1 ID=mRNA_C-linearis_contig95.16966.1|Name=mRNA_C-linearis_contig95.16966.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6558bp|location=Sequence derived from alignment at C-linearis_contig95:116719..131133+ (Chordaria linearis ClinC8C monoicous)back to top |