mRNA_C-linearis_contig95.16965.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16965.1
Unique NamemRNA_C-linearis_contig95.16965.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI)

HSP 1 Score: 439 bits (1130), Expect = 7.300e-142
Identity = 326/611 (53.36%), Postives = 362/611 (59.25%), Query Frame = 2 
Query:   38 ETSMLQRRVAILAATLLLSKVHSTASSGSARPAQQVVVVGLQPRRRQRFPLRDDLEXXXXXXXXPRHRHPNHRNIRKPSPADDALSRYPQMGKFEARHRTGMVVSRDPCAAEAAESLDEMEESWMTTLAALAASGTALALQTV--PDGG--------------HQXXXXXXXXXXXXXXXXXXXAAVQRLQAELSSRLDTLSSWTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLLHLRAHLSGMTTAAGRRTGALFSAARESGDRGLRITGGYGDLLRRRGCGFLARGVEILKRGAAGAAGRQSQQDDXXXXXEGEWEGSR---LVRLTDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPIEEEDMXXXXXXXXXXXXXXXXEPSAVSGRSSMPXXXXXXXXXXXXXXXVGVG---GNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQKLMLEL 1804
            E  ML+ RVAILAATLLL K HS   SG A         G  P ++Q                    RH  H     P  A D  SRYPQ G+FEA H+ G+V+  +P A E  E  D   E W  T+AA+ ASG+ LALQ    PD                ++ XXXXXXXXXXXXXXXX     +R++AELS+ LD      R                                     HL  L A LS +T    RR   L SAA+ SG+ G+RI G   +LLRRRG      G+   K+   G  G    +       EGE E  +   L  LTD  VQNVVDVVARDGWE V    GVVVHRQY+ALGPDGTP  E   XXXXXX            + V GR                   V VG   G    P+FACVKA+A++SVPPEVVYLLFADNSRV EYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+PVEHPAAPR+SRYVRSEILLAGNFMRPVPGDPS+TEFLMVTHVNPGGAAETRAGAMLVNSLC SSPVTFIRRLEVAA+KLMLEL
Sbjct:   31 ENLMLRERVAILAATLLLLKCHSM--SGGA--------TGALPDQQQH------------------RRHVPHYGCTPPR-AQDFGSRYPQTGRFEAWHKRGLVLDDEP-AGEEWEGADR--ECWGATIAAIVASGSTLALQRTLKPDEQQSASAEGYGRQPRHYRRXXXXXXXXXXXXXXXXSAPRFRRMRAELSANLDAWRMRRRRARETTPAAAIVIRQ----------------------HLTQLTAQLSELTGEGFRRAERLLSAAKASGNVGIRIAG-CAELLRRRGRELFLLGLR-KKQNPDGLGG----EGKLGKGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTP--EAXXXXXXXXQAAGVPKAEASSAFVGGRVE-----------GSADDSVPVGDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLEL 568
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE)

HSP 1 Score: 440 bits (1132), Expect = 1.580e-141
Identity = 319/607 (52.55%), Postives = 357/607 (58.81%), Query Frame = 2 
Query:   47 MLQRRVAILAATLLLSKVHSTASSGSARPAQQVVVVGLQPRRRQRFPLRDDLEXXXXXXXXPRHRHPNHRNIRKPSPADDALSRYPQMGKFEARHRTGMVVSRDPCAAEAAESLDEME-ESWMTTLAALAASGTALALQTV--PD----------GGHQXXXXXXXXXXXXXXXXXXXAA----VQRLQAELSSRLDTLSSWTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLLHLRAHLSGMTTAAGRRTGALFSAARESGDRGLRITGGYGDLLRRRGCGFLARGVEILKRGAAGAAGRQSQQDDXXXXXEGEWEGSR---LVRLTDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPIEEEDMXXXXXXXXXXXXXXXXEPSAVSGRSSMPXXXXXXXXXXXXXXXVGV-GGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQKLMLEL 1804
            ML+ RVAILAATLLL + HS   SG A         G  P ++Q                    RH  H     P  A D  SRYPQ G+FEA+H+ G+VV   P    A E  +E + E W  T+AA+ ASG+ LALQ    PD          G  Q    XXXXXXXXXXXXXXX +     +R++AELS+ LD      R                                     HL HL A LS +T    RR   L SAA  SG+ G+RI G   +LLRRRG      G+   ++   G+ G     D      EGE E  +   L  LTD  VQNVVDVVARDGWE V    GVVVHRQY+ALGPDGTP  E                     ++V GR                   VG   G    P+FACVKA+A++SVPPEVVYLLFADNSRV EYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+PVEHPAAPR+SRYVRSEILLAGNFMRPVPGDPS+TEFLMVTHVNPGGAAETRAGAMLVNSLC SSPVTFIRRLEVAA+KLMLEL
Sbjct:    1 MLRERVAILAATLLLLECHSM--SGGA--------TGAIPDQQQH------------------RRHVPHYGC-TPQRAQDFGSRYPQTGRFEAQHKRGLVVDDQP----AGEEWEEADLECWSATMAAIVASGSTLALQRTLKPDEQQSASAEGYGRQQRHIRXXXXXXXXXXXXXXXNSSAPRFRRIRAELSANLDAWRMRRRRARETIPAAAIVIRQ----------------------HLTHLTAQLSELTGEGFRRAERLLSAANASGNVGIRIAG-CAELLRRRGRELFLLGLR-KRQNPDGSGG-----DKLGMGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTP--EAPAAPAAHAQAAGVPKAEAYSASVGGRVE---------GSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLEL 534
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC)

HSP 1 Score: 204 bits (519), Expect = 5.360e-58
Identity = 92/153 (60.13%), Postives = 120/153 (78.43%), Query Frame = 2 
Query: 1271 GVGGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVN 1729
            GVGG  +  RFACVKA  V+  P + V+ LF D++RV EYNEHCRE++D++ LS ++K+TW+ASGR GPFKARDFCT+VH+R L DG L  V+R  EH  APRS +YVRSEILLAGN MRP P DP+KT  + +TH+NPGG+ +++AGA++VN
Sbjct:    7 GVGGGRDGGRFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S2V5A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A8_9STRA)

HSP 1 Score: 207 bits (528), Expect = 3.790e-56
Identity = 100/175 (57.14%), Postives = 127/175 (72.57%), Query Frame = 2 
Query: 1271 GVGGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQKLM 1795
            G GG  N  +FA +KA   I  P E V+ LF DNSRV EYN+HC E+KDLE +   +K+TW+ASG+ GPFKARDFCTLVHF TL+DGT A VS P  HP AP +SRYVRSE+++AG+FMR  P DP+KT F  +T VNPGG A +   A +VNSL    P+TF++++E+AAQ+ M
Sbjct:  211 GEGGAVND-KFAVIKAVGTIDAPIEEVHKLFVDNSRVGEYNDHCHEIKDLEWVGPRTKVTWSASGKYGPFKARDFCTLVHFATLADGTQAIVSVPFNHPQAPATSRYVRSEVIMAGHFMRRDPKDPNKTAFTTITQVNPGGIAGSAGAAKIVNSLSTQGPITFVKKVELAAQQTM 384
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.620e-54
Identity = 123/312 (39.42%), Postives = 165/312 (52.88%), Query Frame = 2 
Query:  857 RRGCGFLARGVEILKRGAAGAAGRQSQQDDXXXXXEGEWEGSRLVRL---TDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPIEEEDMXXXXXXXXXXXXXXXXEPSAVSGRSSMPXXXXXXXXXXXXXXXVGVGGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAA 1783
            RR  GF  RG E L  G  GA  +  +++      EGE   + ++ L    D +V+ V+ V+  DGWE V   SGVVV R+++                                                          G+       +FACVKA   +      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R  PFKARDF T VH+RTL DGT+  ++RPVEHPAA R  +YVR+EIL+A N MRP   DPSKT+F+ VTH+NPGG A++R GA +VN LCA +PV  +  LE +A
Sbjct:  207 RRRQGFGRRGRESLAFGNFGARKQWVKEE------EGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXR-------------------------------------------GIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 469
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A6U4ZLH7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4ZLH7_HEMAN)

HSP 1 Score: 197 bits (502), Expect = 2.330e-54
Identity = 90/164 (54.88%), Postives = 120/164 (73.17%), Query Frame = 2 
Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQK 1789
            +F CVKA AV+   P  VY LF DN+RV EYNE C++++DLE  +  +K+TW+AS R+GPFK RDF T VH+RTL D TL  V+R  +HPAAP++ RY+R EI+L GN M+PVP DP KT F M+THVNPGG A TR G M++NS  A+ P++F++ L  A ++
Sbjct:   37 KFLCVKAEAVLDASPAQVYTLFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLPDQTLLVVNRAEDHPAAPQTDRYLRMEIVLGGNVMKPVPSDPEKTMFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGLRDALKR 200
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA)

HSP 1 Score: 197 bits (501), Expect = 3.350e-53
Identity = 90/163 (55.21%), Postives = 119/163 (73.01%), Query Frame = 2 
Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQ 1786
            +F+CVKATA+++  P  VY LF DNS+V EYNEHC++++D+E +S+D+K+ W+ +   GPFK RDF T+VH+R   DGTL  ++RP  HP  P   ++ R+E+LLAGN MRPV GD SKTEF M+THVNPGG      GA +VN +C+  PV FIRRLE AAQ
Sbjct:  135 KFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAAQ 297
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 4.060e-52
Identity = 93/162 (57.41%), Postives = 119/162 (73.46%), Query Frame = 2 
Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAA 1783
            +FACVKA   +      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R  PFKARDF T VH+RTL DGT+  V+RPVEHPAA R  +YVR+EIL+A N MRP   DPSKT+F+ VTH+NPGG A++R GA +VN LCA +PV  +  LE +A
Sbjct:  243 KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 404
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S0VPD5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VPD5_9CRYP)

HSP 1 Score: 180 bits (456), Expect = 5.790e-49
Identity = 81/138 (58.70%), Postives = 106/138 (76.81%), Query Frame = 2 
Query: 1358 LFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRL 1771
            LF DN+RV EYNE C++++DLE  +  +K+TW+AS R+GPFK RDF T VH+RTL+D TL  V+R  +HPAAPR+ RY+R EI+L GN MR VPGDP KT F M+THVNPGG A TR G M++NS  A+ P++F++ L
Sbjct:    2 LFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLADQTLLVVNRAEDHPAAPRTDRYLRMEIVLGGNVMRAVPGDPQKTSFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGL 139
[Close]
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S4NFJ2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NFJ2_GUITH)

HSP 1 Score: 182 bits (463), Expect = 1.500e-48
Identity = 86/163 (52.76%), Postives = 114/163 (69.94%), Query Frame = 2 
Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPG-----DPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRL 1771
            +F CV ++ ++  PPE VY  F DNSRV EYNE C++VKDLE L  ++KITW+ASGR+GPFK RDF T VH+RT SDG+L   +R  +HP AP + R++R EI++ GN +RP        D S+T   ++THVNPGG AETR G M++NS  AS P+ FI+ L
Sbjct:   58 KFFCVMSSGILDAPPEQVYTYFVDNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLIIANRAEKHPKAPETERFLRMEIMIGGNVLRPAREADGSLDHSRTNITVLTHVNPGGIAETRLGTMILNSAAASGPIKFIQGL 220
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLJ0_ECTSI7.300e-14253.36START domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5J623_9PHAE1.580e-14152.55START domain-containing protein n=1 Tax=Ectocarpus... [more]
I2CRQ3_NANGC5.360e-5860.13Lipid transfer protein 5-like protein (Fragment) n... [more]
A0A7S2V5A8_9STRA3.790e-5657.14Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D8LAW9_ECTSI1.620e-5439.42START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6U4ZLH7_HEMAN2.330e-5454.88Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2RES9_9STRA3.350e-5355.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6H5JSI0_9PHAE4.060e-5257.41START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S0VPD5_9CRYP5.790e-4958.70Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4NFJ2_GUITH1.500e-4852.76Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:112508..116308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.2e-31
Seed eggNOG ortholog2880.D7G2E9
KEGG koko:K10779
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
Ec32 ortholog descriptionSTART domain
Ec32 orthologEc-22_001140.1
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Exons5
Model size2400
Cds size2166
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930810.3332598-UTR-C-linearis_contig95:112507..1126951622930810.3332598-UTR-C-linearis_contig95:112507..112695Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 112508..112695 -
1690881261.797604-UTR-C-linearis_contig95:112507..1126951690881261.797604-UTR-C-linearis_contig95:112507..112695Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 112508..112695 -
1622930810.4739566-UTR-C-linearis_contig95:116262..1163081622930810.4739566-UTR-C-linearis_contig95:116262..116308Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 116263..116308 -
1690881261.87057-UTR-C-linearis_contig95:116262..1163081690881261.87057-UTR-C-linearis_contig95:116262..116308Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 116263..116308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930810.3617501-CDS-C-linearis_contig95:112695..1132191622930810.3617501-CDS-C-linearis_contig95:112695..113219Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 112696..113219 -
1690881261.8172412-CDS-C-linearis_contig95:112695..1132191690881261.8172412-CDS-C-linearis_contig95:112695..113219Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 112696..113219 -
1622930810.3952475-CDS-C-linearis_contig95:113655..1137291622930810.3952475-CDS-C-linearis_contig95:113655..113729Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 113656..113729 -
1690881261.829159-CDS-C-linearis_contig95:113655..1137291690881261.829159-CDS-C-linearis_contig95:113655..113729Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 113656..113729 -
1622930810.420293-CDS-C-linearis_contig95:114104..1142351622930810.420293-CDS-C-linearis_contig95:114104..114235Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 114105..114235 -
1690881261.839741-CDS-C-linearis_contig95:114104..1142351690881261.839741-CDS-C-linearis_contig95:114104..114235Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 114105..114235 -
1622930810.4382844-CDS-C-linearis_contig95:114756..1160591622930810.4382844-CDS-C-linearis_contig95:114756..116059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 114757..116059 -
1690881261.84996-CDS-C-linearis_contig95:114756..1160591690881261.84996-CDS-C-linearis_contig95:114756..116059Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 114757..116059 -
1622930810.4594123-CDS-C-linearis_contig95:116128..1162621622930810.4594123-CDS-C-linearis_contig95:116128..116262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 116129..116262 -
1690881261.8597133-CDS-C-linearis_contig95:116128..1162621690881261.8597133-CDS-C-linearis_contig95:116128..116262Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 116129..116262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16965.1prot_C-linearis_contig95.16965.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 112696..116262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16965.1

>prot_C-linearis_contig95.16965.1 ID=prot_C-linearis_contig95.16965.1|Name=mRNA_C-linearis_contig95.16965.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=722bp
MLQRRVAILAATLLLSKVHSTASSGSARPAQQVVVVGLQPRRRQRFPLRD
DLEEEEDDDDDPRHRHPNHRNIRKPSPADDALSRYPQMGKFEARHRTGMV
VSRDPCAAEAAESLDEMEESWMTTLAALAASGTALALQTVPDGGHQQHRR
RRRRRRPPDVSSAATAAVQRLQAELSSRLDTLSSWTRRRHRRILSPPAAR
RRRRSAPPFSPSQASAAAALAARHHLLHLRAHLSGMTTAAGRRTGALFSA
ARESGDRGLRITGGYGDLLRRRGCGFLARGVEILKRGAAGAAGRQSQQDD
EEGEEEGEWEGSRLVRLTDMTVQNVVDVVARDGWEHVATTSGVVVHRQYI
ALGPDGTPIEEEDMAAAAAAATAPGGGAIAEPSAVSGRSSMPTSSGSSSS
SSSSGGGVGVGGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNE
HCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQV
SRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGA
AETRAGAMLVNSLCASSPVTFIRRLEVAAQKLMLELQQQQQQQLQQQRAS
SAALPAGDGNGGGGDGDSGGDVNRDTGSRGGAAVKDKGLDGVGVGAGRAI
DERESLEDKESGSATGSGGGVGGVEVEVEVEEGGDAAAVTAVLPNFVVEA
SFGGALTPRQRQQRQQHQQPQ*
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mRNA from alignment at C-linearis_contig95:112508..116308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16965.1 ID=mRNA_C-linearis_contig95.16965.1|Name=mRNA_C-linearis_contig95.16965.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3801bp|location=Sequence derived from alignment at C-linearis_contig95:112508..116308- (Chordaria linearis ClinC8C monoicous)
AGCGAGAGCACTGCGCCAGGGGTAGCCGGGGGGGCGGGAAACCTCCATGC
TTCAACGGCGTGTGGCCATCCTGGCCGCAACGCTGCTGTTGTCAAAGGTG
CACAGCACAGCGAGCTCCGGCTCGGCTAGACCCGCGCAGCAAGTAGTCGT
AGTCGGCCTTCAACCCAGGAGAAGGCAGAGGTTCCCCCTAAGGGACGACC
TCGAGGAGGAGGAAGACGACGACGACGACCCACGACATCGAAGGCAGAGG
TTCCCCCTAAGGGACGACCTCGAGGAGGAGGAAGACGACGACGACGACCC
ACGACATCGGCATCCCAACCACCGTAACATAAGAAAACCGTCACCAGCAG
ACGACGCGCTGAGCCGCTACCCTCAGATGGGAAAGTTTGAGGCAAGGCAC
AGGACCGGCATGGTTGTATCCCGTGATCCTTGCGCTGCGGAGGCTGCGGA
GAGTCTGGACGAGATGGAAGAGTCCTGGATGACAACGCTAGCAGCTCTTG
CTGCCTCGGGGACTGCCCTCGCCCTTCAGACGGTCCCCGATGGCGGGCAT
CAACAACATCGGCGACGAAGGCGGCGGAGGCGTCCCCCCGACGTATCCTC
CGCTGCAACCGCTGCGGTGCAACGGCTGCAGGCGGAGCTATCGTCGCGGC
TGGACACCCTCTCCAGCTGGACCAGACGGCGACACCGCAGGATTCTTTCT
CCACCAGCAGCACGACGACGGCGTCGTTCGGCGCCTCCTTTTTCTCCCAG
CCAAGCCTCGGCGGCAGCAGCGCTGGCTGCGCGGCACCACCTGTTGCATC
TGCGGGCACACCTCTCGGGGATGACAACCGCAGCCGGCCGGCGGACCGGA
GCTCTATTTTCAGCCGCCCGCGAGTCCGGCGACCGCGGCCTCCGAATAAC
GGGGGGCTATGGTGACCTGCTGCGGCGACGGGGCTGCGGGTTTCTGGCTC
GGGGTGTAGAAATATTGAAGCGCGGGGCAGCCGGCGCGGCGGGCAGGCAG
TCGCAGCAGGATGACGAGGAGGGAGAGGAGGAGGGGGAGTGGGAGGGCTC
GCGGCTGGTGAGGCTGACCGATATGACGGTCCAGAACGTCGTCGATGTTG
TCGCGCGCGACGGGTGGGAGCACGTCGCAACGACGAGCGGCGTCGTTGTG
CACCGGCAGTACATCGCTCTGGGCCCGGACGGCACGCCTATCGAGGAGGA
AGACATGGCGGCGGCGGCGGCGGCGGCGACGGCGCCGGGTGGGGGGGCGA
TAGCGGAACCTTCGGCCGTTTCGGGTAGAAGTAGTATGCCTACCAGTAGT
GGTAGCAGTAGTAGTAGTAGTAGTAGTGGTGGTGGTGTTGGTGTTGGTGG
CAACGATAACACGCCGCGGTTTGCGTGCGTGAAGGCCACGGCGGTAATTT
CCGTCCCCCCGGAGGTGGTGTACCTACTGTTCGCGGACAACTCGCGCGTT
TCCGAGTACAACGAGCACTGCCGCGAGGTCAAGGACCTGGAGGTGCTCTC
GCAGGACAGCAAGATCACCTGGGCTGCGAGCGGGCGCATGGGGCCCTTCA
AGGTGGGTGCAGCTGCTGCGCATGTCCTTGTGCCGTCCGTTGGTGTTTTG
TTTGTTCAAGAGAGGGGAAGGGGGGAACATTGACTCTTTGTACGTGGGGC
CAAGGGAAAGGTGCGAATCAAATCAATGTAGTATGTAGGTGCCAAGACAC
ACCGGCGATAGAGACAGGGAAGGACGGGGGGGGGGAGGAGCAAACTACTG
TGCAGGAAGGCAGGCAGGCAGGTAGGCAAGGTAAGAGGCAAGGGGTAAGA
GTCGTTTTGTTTTCGATGTTGGGTGCGTCTATGATACTCTCTTTATTGCA
TCTCGCGAGGTCCTACGGAGGTGAAAGTAGGCGGCATGGTGCCATACCAT
ACCATACAACACGGGAAAACTGTGTCGTCATGGTGTGTTTTTGTCCGGGA
CCTAGGTGCAGAATATTCACTTCGGCACGGCAGTGCATGCACGGTTCAGC
AGTTCACCCTCTCCTCGCTCGCTCGCTCGCTCGGGTTTTGCCTCTATGCA
TGGCATCATGTGCACACAAGCAGGCTCGGGACTTTTGCACGCTCGTGCAC
TTTCGGACGCTGAGCGACGGCACCCTAGCCCAGGTCTCGCGGCCGGTGGA
GCACCCAGCGGCTCCCCGCAGCAGCCGCTACGTCCGGAGCGAGATCCTCT
TGGCGTGAGTCAGATATTTAGATGCATAGCCCGACTGAATCCAGAGACTC
GGTGTGGTAGGGTTGTTGCCGGCCTCGCGAGTAAGATGCCGATGGTTTGT
GTTGATGGTCGTGGCTGCCGCCTTGTGGGCGCCCTGTGGCTAACTCTCTT
GATCGCCGCCGGAATGGAAGTATAGTAGATGGAAAACGAACAGCCGGGGG
GCGCATGGCATGGCCGCACCTCTCGTCTCTTGCGTCGCTGAAGTTCGTTC
GCGGGTTAAACCGTTCCTGCATGTGTCGGTGTTTATCTAGATGTTGCCCC
TCTGGTTGCTGTCATCGTTGAAACGCAACCATCGCCGTGCTGCACGCGCT
CTATTTTTTGTTGGTTCACCACCGCGCAGCGGAAACTTCATGCGGCCGGT
GCCCGGGGATCCCTCGAAGACCGAGTTTTTGATGGTAACGCACGTGAACC
CAGGTGAAAATAGTTGCTTTTGTCCCCTTTCGCGACCTCTCTCATGTGTT
GGGTAGCAGTTCCTCCCTACTCCTTCTGTTCCGCAAAGAACGGTTGGCGA
GGATAGTCCAAGCATGTTCTTCGAAGCTTACTTCGTATTCCATTATTGTC
CCTTCGCTTCTCTCTCCCCCTCCCATCTGTCGGCACTACGATGGTTGGCG
TCTTTTGTCTCTCTCGGACACCCGAAAAAGCAAGAAGGCGTGAACGTCCG
CAGGGTTCCCCCTGAAAGCATGTGATGGTGTCTTTTCACGATTGATCAGC
CCACACCGACGGCATCGCACTGCACCCGCGCCAAGCATGCCCGATGTAGA
AGAACCCCCATAATTGCTCTCAAGGCATCCCACTACCACTACTGTACCAT
CCGCGTGCGGCACGTTTTGTCGAACCGCCCACCACCAAGGGGGCGCCGCG
GAGACACGGGCCGGCGCGATGCTCGTCAACTCGCTGTGCGCCAGCTCCCC
GGTCACCTTCATCCGCAGGCTGGAGGTGGCCGCGCAGAAGCTGATGCTCG
AGCTGCAGCAGCAGCAGCAGCAGCAGCTCCAGCAGCAGCGGGCGTCCTCC
GCCGCCCTGCCCGCGGGAGATGGTAATGGCGGTGGTGGCGATGGTGACAG
CGGCGGCGATGTGAACAGGGATACGGGTAGTCGCGGCGGCGCGGCGGTGA
AGGACAAGGGGCTAGACGGCGTAGGAGTAGGAGCAGGAAGAGCGATAGAC
GAACGAGAAAGTTTAGAGGACAAAGAAAGTGGAAGTGCAACTGGAAGTGG
AGGTGGTGTTGGTGGAGTAGAGGTAGAGGTAGAGGTCGAGGAAGGGGGGG
ATGCTGCAGCGGTGACGGCGGTGTTGCCCAATTTCGTTGTTGAAGCGTCG
TTTGGTGGAGCCCTGACCCCTCGGCAGCGGCAGCAGCGGCAGCAGCACCA
ACAGCCGCAGTAGCAACAGCAGCCGGAGGCTTGCAATCGCCAACCACAGC
CGCCGGAGCGGCCTCCTTCCTAGCAGTAGCCACCCCAGCGTTAAATCTGG
CTGGCGTGCGTATGAAACAGCTTACGTGCGAGGGGTGACGGGAAGGGCTG
ATGGGGGTGGGGACGGCGTTTTGAGGTACAACGCTGTAAAATGTGAGTAG
A
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Coding sequence (CDS) from alignment at C-linearis_contig95:112508..116308-

>mRNA_C-linearis_contig95.16965.1 ID=mRNA_C-linearis_contig95.16965.1|Name=mRNA_C-linearis_contig95.16965.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4332bp|location=Sequence derived from alignment at C-linearis_contig95:112508..116308- (Chordaria linearis ClinC8C monoicous)
ATGCTTCAACGGCGTGTGGCCATCCTGGCCGCAACGCTGCTGTTGTCAAA
GGTGCACAGCACAGCGAGCTCCGGCTCGGCTAGACCCGCGCAGCAAGTAG
TCGTAGTCGGCCTTCAACCCAGGAGAAGGCAGAGATGCTTCAACGGCGTG
TGGCCATCCTGGCCGCAACGCTGCTGTTGTCAAAGGTGCACAGCACAGCG
AGCTCCGGCTCGGCTAGACCCGCGCAGCAAGTAGTCGTAGTCGGCCTTCA
ACCCAGGAGAAGGCAGAGGTTCCCCCTAAGGGACGACCTCGAGGAGGAGG
AAGACGACGACGACGACCCACGACATCGGCATCCCAACCACCGTAACATA
AGAAAACCGTCACCAGCAGACGACGCGCTGAGCCGCTACCCTCAGATGGG
AAAGTTTGAGGCAAGGCACAGGACCGGCATGGTTGTATCCCGTGATCCTT
GCGCTGCGGAGGCTGCGGAGAGTCTGGACGAGATGGAAGAGTCCTGGATG
ACAACGCTAGCAGCTCTTGCTGCCTCGGGGACTGCCCTCGCCCTTCAGAC
GGTCCCCGATGGCGGGCATCAACAACATCGGCGACGAAGGCGGCGGAGGC
GTCCCCCCGACGTATCCTCCGCTGCAACCGCTGCGGTGCAACGGCTGCAG
GCGGAGCTATCGTCGCGGCTGGACACCCTCTCCAGCTGGACCAGACGGCG
ACACCGCAGGATTCTTTCTCCACCAGCAGCACGACGACGGCGTCGTTCGG
CGCCTCCTTTTTCTCCCAGCCAAGCCTCGGCGGCAGCAGCGCTGGCTGCG
CGGCACCACCTGTTGCATCTGCGGGCACACCTCTCGGGGATGACAACCGC
AGCCGGCCGGCGGACCGGAGCTCTATTTTCAGCCGCCCGCGAGTCCGGCG
ACCGCGGCCTCCGAATAACGGGGGGCTATGGTGACCTGCTGCGGCGACGG
GGCTGCGGGTTTCTGGCTCGGGGTGTAGAAATATTGAAGCGCGGGGCAGC
CGGCGCGGCGGGCAGGCAGTCGCAGCAGGATGACGAGGAGGGAGAGGAGG
AGGGGGAGTGGGAGGGCTCGCGGCTGGTGAGGCTGACCGATATGACGGTC
CAGAACGTCGTCGATGTTGTCGCGCGCGACGGGTGGGAGCACGTCGCAAC
GACGAGCGGCGTCGTTGTGCACCGGCAGTACATCGCTCTGGGCCCGGACG
GCACGCCTATCGAGGAGGAAGACATGGCGGCGGCGGCGGCGGCGGCGACG
GCGCCGGGTGGGGGGGCGATAGCGGAACCTTCGGCCGTTTCGGGTAGAAG
TAGTATGCCTACCAGTAGTGGTAGCAGTAGTAGTAGTAGTAGTAGTGGTG
GTGGTGTTGGTGTTGGTGGCAACGATAACACGCCGCGGTTTGCGTGCGTG
AAGGCCACGGCGGTAATTTCCGTCCCCCCGGAGGTGGTGTACCTACTGTT
CGCGGACAACTCGCGCGTTTCCGAGTACAACGAGCACTGCCGCGAGGTCA
AGGACCTGGAGGTGCTCTCGCAGGACAGCAAGATCACCTGGGCTGCGAGC
GGGCGCATGGGGCCCTTCAAGGTTCCCCCTAAGGGACGACCTCGAGGAGG
AGGAAGACGACGACGACGACCCACGACATCGGCATCCCAACCACCGTAAC
ATAAGAAAACCGTCACCAGCAGACGACGCGCTGAGCCGCTACCCTCAGAT
GGGAAAGTTTGAGGCAAGGCACAGGACCGGCATGGTTGTATCCCGTGATC
CTTGCGCTGCGGAGGCTGCGGAGAGTCTGGACGAGATGGAAGAGTCCTGG
ATGACAACGCTAGCAGCTCTTGCTGCCTCGGGGACTGCCCTCGCCCTTCA
GACGGTCCCCGATGGCGGGCATCAACAACATCGGCGACGAAGGCGGCGGA
GGCGTCCCCCCGACGTATCCTCCGCTGCAACCGCTGCGGTGCAACGGCTG
CAGGCGGAGCTATCGTCGCGGCTGGACACCCTCTCCAGCTGGACCAGACG
GCGACACCGCAGGATTCTTTCTCCACCAGCAGCACGACGACGGCGTCGTT
CGGCGCCTCCTTTTTCTCCCAGCCAAGCCTCGGCGGCAGCAGCGCTGGCT
GCGCGGCACCACCTGTTGCATCTGCGGGCACACCTCTCGGGGATGACAAC
CGCAGCCGGCCGGCGGACCGGAGCTCTATTTTCAGCCGCCCGCGAGTCCG
GCGACCGCGGCCTCCGAATAACGGGGGGCTATGGTGACCTGCTGCGGCGA
CGGGGCTGCGGGTTTCTGGCTCGGGGTGTAGAAATATTGAAGCGCGGGGC
AGCCGGCGCGGCGGGCAGGCAGTCGCAGCAGGATGACGAGGAGGGAGAGG
AGGAGGGGGAGTGGGAGGGCTCGCGGCTGGTGAGGCTGACCGATATGACG
GTCCAGAACGTCGTCGATGTTGTCGCGCGCGACGGGTGGGAGCACGTCGC
AACGACGAGCGGCGTCGTTGTGCACCGGCAGTACATCGCTCTGGGCCCGG
ACGGCACGCCTATCGAGGAGGAAGACATGGCGGCGGCGGCGGCGGCGGCG
ACGGCGCCGGGTGGGGGGGCGATAGCGGAACCTTCGGCCGTTTCGGGTAG
AAGTAGTATGCCTACCAGTAGTGGTAGCAGTAGTAGTAGTAGTAGTAGTG
GTGGTGGTGTTGGTGTTGGTGGCAACGATAACACGCCGCGGTTTGCGTGC
GTGAAGGCCACGGCGGTAATTTCCGTCCCCCCGGAGGTGGTGTACCTACT
GTTCGCGGACAACTCGCGCGTTTCCGAGTACAACGAGCACTGCCGCGAGG
TCAAGGACCTGGAGGTGCTCTCGCAGGACAGCAAGATCACCTGGGCTGCG
AGCGGGCGCATGGGGCCCTTCAAGGCTCGGGACTTTTGCACGCTCGTGCA
CTTTCGGACGCTGAGCGACGGCACCCTAGCCCAGGTCTCGCGGCCGGTGG
AGCACCCAGCGGCTCCCCGCAGCAGCCGCTACGTCCGGAGCGAGATCCTC
TTGGCGCTCGGGACTTTTGCACGCTCGTGCACTTTCGGACGCTGAGCGAC
GGCACCCTAGCCCAGGTCTCGCGGCCGGTGGAGCACCCAGCGGCTCCCCG
CAGCAGCCGCTACGTCCGGAGCGAGATCCTCTTGGCCGGAAACTTCATGC
GGCCGGTGCCCGGGGATCCCTCGAAGACCGAGTTTTTGATGGTAACGCAC
GTGAACCCAGCGGAAACTTCATGCGGCCGGTGCCCGGGGATCCCTCGAAG
ACCGAGTTTTTGATGGTAACGCACGTGAACCCAGGGGGCGCCGCGGAGAC
ACGGGCCGGCGCGATGCTCGTCAACTCGCTGTGCGCCAGCTCCCCGGTCA
CCTTCATCCGCAGGCTGGAGGTGGCCGCGCAGAAGCTGATGCTCGAGCTG
CAGCAGCAGCAGCAGCAGCAGCTCCAGCAGCAGCGGGCGTCCTCCGCCGC
CCTGCCCGCGGGAGATGGTAATGGCGGTGGTGGCGATGGTGACAGCGGCG
GCGATGTGAACAGGGATACGGGTAGTCGCGGCGGCGCGGCGGTGAAGGAC
AAGGGGCTAGACGGCGTAGGAGTAGGAGCAGGAAGAGCGATAGACGAACG
AGAAAGTTTAGAGGACAAAGAAAGTGGAAGTGCAACTGGAAGTGGAGGTG
GTGTTGGTGGAGTAGAGGTAGAGGTAGAGGTCGAGGAAGGGGGGGATGCT
GCAGCGGTGACGGCGGTGTTGCCCAATTTCGTTGTTGAAGCGTCGTTTGG
TGGAGCCCTGACCCCTCGGCAGCGGCAGCAGCGGCAGCAGCACCAACAGC
CGCAGTAGGGGGCGCCGCGGAGACACGGGCCGGCGCGATGCTCGTCAACT
CGCTGTGCGCCAGCTCCCCGGTCACCTTCATCCGCAGGCTGGAGGTGGCC
GCGCAGAAGCTGATGCTCGAGCTGCAGCAGCAGCAGCAGCAGCAGCTCCA
GCAGCAGCGGGCGTCCTCCGCCGCCCTGCCCGCGGGAGATGGTAATGGCG
GTGGTGGCGATGGTGACAGCGGCGGCGATGTGAACAGGGATACGGGTAGT
CGCGGCGGCGCGGCGGTGAAGGACAAGGGGCTAGACGGCGTAGGAGTAGG
AGCAGGAAGAGCGATAGACGAACGAGAAAGTTTAGAGGACAAAGAAAGTG
GAAGTGCAACTGGAAGTGGAGGTGGTGTTGGTGGAGTAGAGGTAGAGGTA
GAGGTCGAGGAAGGGGGGGATGCTGCAGCGGTGACGGCGGTGTTGCCCAA
TTTCGTTGTTGAAGCGTCGTTTGGTGGAGCCCTGACCCCTCGGCAGCGGC
AGCAGCGGCAGCAGCACCAACAGCCGCAGTAG
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