mRNA_C-linearis_contig95.16965.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI) HSP 1 Score: 439 bits (1130), Expect = 7.300e-142 Identity = 326/611 (53.36%), Postives = 362/611 (59.25%), Query Frame = 2 Query: 38 ETSMLQRRVAILAATLLLSKVHSTASSGSARPAQQVVVVGLQPRRRQRFPLRDDLEXXXXXXXXPRHRHPNHRNIRKPSPADDALSRYPQMGKFEARHRTGMVVSRDPCAAEAAESLDEMEESWMTTLAALAASGTALALQTV--PDGG--------------HQXXXXXXXXXXXXXXXXXXXAAVQRLQAELSSRLDTLSSWTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLLHLRAHLSGMTTAAGRRTGALFSAARESGDRGLRITGGYGDLLRRRGCGFLARGVEILKRGAAGAAGRQSQQDDXXXXXEGEWEGSR---LVRLTDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPIEEEDMXXXXXXXXXXXXXXXXEPSAVSGRSSMPXXXXXXXXXXXXXXXVGVG---GNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQKLMLEL 1804
E ML+ RVAILAATLLL K HS SG A G P ++Q RH H P A D SRYPQ G+FEA H+ G+V+ +P A E E D E W T+AA+ ASG+ LALQ PD ++ XXXXXXXXXXXXXXXX +R++AELS+ LD R HL L A LS +T RR L SAA+ SG+ G+RI G +LLRRRG G+ K+ G G + EGE E + L LTD VQNVVDVVARDGWE V GVVVHRQY+ALGPDGTP E XXXXXX + V GR V VG G P+FACVKA+A++SVPPEVVYLLFADNSRV EYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+PVEHPAAPR+SRYVRSEILLAGNFMRPVPGDPS+TEFLMVTHVNPGGAAETRAGAMLVNSLC SSPVTFIRRLEVAA+KLMLEL
Sbjct: 31 ENLMLRERVAILAATLLLLKCHSM--SGGA--------TGALPDQQQH------------------RRHVPHYGCTPPR-AQDFGSRYPQTGRFEAWHKRGLVLDDEP-AGEEWEGADR--ECWGATIAAIVASGSTLALQRTLKPDEQQSASAEGYGRQPRHYRRXXXXXXXXXXXXXXXXSAPRFRRMRAELSANLDAWRMRRRRARETTPAAAIVIRQ----------------------HLTQLTAQLSELTGEGFRRAERLLSAAKASGNVGIRIAG-CAELLRRRGRELFLLGLR-KKQNPDGLGG----EGKLGKGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTP--EAXXXXXXXXQAAGVPKAEASSAFVGGRVE-----------GSADDSVPVGDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLEL 568
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE) HSP 1 Score: 440 bits (1132), Expect = 1.580e-141 Identity = 319/607 (52.55%), Postives = 357/607 (58.81%), Query Frame = 2 Query: 47 MLQRRVAILAATLLLSKVHSTASSGSARPAQQVVVVGLQPRRRQRFPLRDDLEXXXXXXXXPRHRHPNHRNIRKPSPADDALSRYPQMGKFEARHRTGMVVSRDPCAAEAAESLDEME-ESWMTTLAALAASGTALALQTV--PD----------GGHQXXXXXXXXXXXXXXXXXXXAA----VQRLQAELSSRLDTLSSWTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHLLHLRAHLSGMTTAAGRRTGALFSAARESGDRGLRITGGYGDLLRRRGCGFLARGVEILKRGAAGAAGRQSQQDDXXXXXEGEWEGSR---LVRLTDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPIEEEDMXXXXXXXXXXXXXXXXEPSAVSGRSSMPXXXXXXXXXXXXXXXVGV-GGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQKLMLEL 1804
ML+ RVAILAATLLL + HS SG A G P ++Q RH H P A D SRYPQ G+FEA+H+ G+VV P A E +E + E W T+AA+ ASG+ LALQ PD G Q XXXXXXXXXXXXXXX + +R++AELS+ LD R HL HL A LS +T RR L SAA SG+ G+RI G +LLRRRG G+ ++ G+ G D EGE E + L LTD VQNVVDVVARDGWE V GVVVHRQY+ALGPDGTP E ++V GR VG G P+FACVKA+A++SVPPEVVYLLFADNSRV EYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVS+PVEHPAAPR+SRYVRSEILLAGNFMRPVPGDPS+TEFLMVTHVNPGGAAETRAGAMLVNSLC SSPVTFIRRLEVAA+KLMLEL
Sbjct: 1 MLRERVAILAATLLLLECHSM--SGGA--------TGAIPDQQQH------------------RRHVPHYGC-TPQRAQDFGSRYPQTGRFEAQHKRGLVVDDQP----AGEEWEEADLECWSATMAAIVASGSTLALQRTLKPDEQQSASAEGYGRQQRHIRXXXXXXXXXXXXXXXNSSAPRFRRIRAELSANLDAWRMRRRRARETIPAAAIVIRQ----------------------HLTHLTAQLSELTGEGFRRAERLLSAANASGNVGIRIAG-CAELLRRRGRELFLLGLR-KRQNPDGSGG-----DKLGMGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTP--EAPAAPAAHAQAAGVPKAEAYSASVGGRVE---------GSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLEL 534
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC) HSP 1 Score: 204 bits (519), Expect = 5.360e-58 Identity = 92/153 (60.13%), Postives = 120/153 (78.43%), Query Frame = 2 Query: 1271 GVGGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVN 1729
GVGG + RFACVKA V+ P + V+ LF D++RV EYNEHCRE++D++ LS ++K+TW+ASGR GPFKARDFCT+VH+R L DG L V+R EH APRS +YVRSEILLAGN MRP P DP+KT + +TH+NPGG+ +++AGA++VN
Sbjct: 7 GVGGGRDGGRFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S2V5A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A8_9STRA) HSP 1 Score: 207 bits (528), Expect = 3.790e-56 Identity = 100/175 (57.14%), Postives = 127/175 (72.57%), Query Frame = 2 Query: 1271 GVGGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQKLM 1795
G GG N +FA +KA I P E V+ LF DNSRV EYN+HC E+KDLE + +K+TW+ASG+ GPFKARDFCTLVHF TL+DGT A VS P HP AP +SRYVRSE+++AG+FMR P DP+KT F +T VNPGG A + A +VNSL P+TF++++E+AAQ+ M
Sbjct: 211 GEGGAVND-KFAVIKAVGTIDAPIEEVHKLFVDNSRVGEYNDHCHEIKDLEWVGPRTKVTWSASGKYGPFKARDFCTLVHFATLADGTQAIVSVPFNHPQAPATSRYVRSEVIMAGHFMRRDPKDPNKTAFTTITQVNPGGIAGSAGAAKIVNSLSTQGPITFVKKVELAAQQTM 384
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI) HSP 1 Score: 206 bits (523), Expect = 1.620e-54 Identity = 123/312 (39.42%), Postives = 165/312 (52.88%), Query Frame = 2 Query: 857 RRGCGFLARGVEILKRGAAGAAGRQSQQDDXXXXXEGEWEGSRLVRL---TDMTVQNVVDVVARDGWEHVATTSGVVVHRQYIALGPDGTPIEEEDMXXXXXXXXXXXXXXXXEPSAVSGRSSMPXXXXXXXXXXXXXXXVGVGGNDNTPRFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAA 1783
RR GF RG E L G GA + +++ EGE + ++ L D +V+ V+ V+ DGWE V SGVVV R+++ G+ +FACVKA + +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R PFKARDF T VH+RTL DGT+ ++RPVEHPAA R +YVR+EIL+A N MRP DPSKT+F+ VTH+NPGG A++R GA +VN LCA +PV + LE +A
Sbjct: 207 RRRQGFGRRGRESLAFGNFGARKQWVKEE------EGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXR-------------------------------------------GIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 469
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A6U4ZLH7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4ZLH7_HEMAN) HSP 1 Score: 197 bits (502), Expect = 2.330e-54 Identity = 90/164 (54.88%), Postives = 120/164 (73.17%), Query Frame = 2 Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQK 1789
+F CVKA AV+ P VY LF DN+RV EYNE C++++DLE + +K+TW+AS R+GPFK RDF T VH+RTL D TL V+R +HPAAP++ RY+R EI+L GN M+PVP DP KT F M+THVNPGG A TR G M++NS A+ P++F++ L A ++
Sbjct: 37 KFLCVKAEAVLDASPAQVYTLFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLPDQTLLVVNRAEDHPAAPQTDRYLRMEIVLGGNVMKPVPSDPEKTMFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGLRDALKR 200
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA) HSP 1 Score: 197 bits (501), Expect = 3.350e-53 Identity = 90/163 (55.21%), Postives = 119/163 (73.01%), Query Frame = 2 Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAAQ 1786
+F+CVKATA+++ P VY LF DNS+V EYNEHC++++D+E +S+D+K+ W+ + GPFK RDF T+VH+R DGTL ++RP HP P ++ R+E+LLAGN MRPV GD SKTEF M+THVNPGG GA +VN +C+ PV FIRRLE AAQ
Sbjct: 135 KFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAAQ 297
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE) HSP 1 Score: 197 bits (501), Expect = 4.060e-52 Identity = 93/162 (57.41%), Postives = 119/162 (73.46%), Query Frame = 2 Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRLEVAA 1783
+FACVKA + +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R PFKARDF T VH+RTL DGT+ V+RPVEHPAA R +YVR+EIL+A N MRP DPSKT+F+ VTH+NPGG A++R GA +VN LCA +PV + LE +A
Sbjct: 243 KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 404
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S0VPD5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VPD5_9CRYP) HSP 1 Score: 180 bits (456), Expect = 5.790e-49 Identity = 81/138 (58.70%), Postives = 106/138 (76.81%), Query Frame = 2 Query: 1358 LFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPGDPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRL 1771
LF DN+RV EYNE C++++DLE + +K+TW+AS R+GPFK RDF T VH+RTL+D TL V+R +HPAAPR+ RY+R EI+L GN MR VPGDP KT F M+THVNPGG A TR G M++NS A+ P++F++ L
Sbjct: 2 LFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLADQTLLVVNRAEDHPAAPRTDRYLRMEIVLGGNVMRAVPGDPQKTSFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGL 139
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Match: A0A7S4NFJ2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NFJ2_GUITH) HSP 1 Score: 182 bits (463), Expect = 1.500e-48 Identity = 86/163 (52.76%), Postives = 114/163 (69.94%), Query Frame = 2 Query: 1298 RFACVKATAVISVPPEVVYLLFADNSRVSEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSRPVEHPAAPRSSRYVRSEILLAGNFMRPVPG-----DPSKTEFLMVTHVNPGGAAETRAGAMLVNSLCASSPVTFIRRL 1771
+F CV ++ ++ PPE VY F DNSRV EYNE C++VKDLE L ++KITW+ASGR+GPFK RDF T VH+RT SDG+L +R +HP AP + R++R EI++ GN +RP D S+T ++THVNPGG AETR G M++NS AS P+ FI+ L
Sbjct: 58 KFFCVMSSGILDAPPEQVYTYFVDNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLIIANRAEKHPKAPETERFLRMEIMIGGNVLRPAREADGSLDHSRTNITVLTHVNPGGIAETRLGTMILNSAAASGPIKFIQGL 220 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16965.1 >prot_C-linearis_contig95.16965.1 ID=prot_C-linearis_contig95.16965.1|Name=mRNA_C-linearis_contig95.16965.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=722bp MLQRRVAILAATLLLSKVHSTASSGSARPAQQVVVVGLQPRRRQRFPLRDback to top mRNA from alignment at C-linearis_contig95:112508..116308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16965.1 ID=mRNA_C-linearis_contig95.16965.1|Name=mRNA_C-linearis_contig95.16965.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3801bp|location=Sequence derived from alignment at C-linearis_contig95:112508..116308- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:112508..116308- >mRNA_C-linearis_contig95.16965.1 ID=mRNA_C-linearis_contig95.16965.1|Name=mRNA_C-linearis_contig95.16965.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4332bp|location=Sequence derived from alignment at C-linearis_contig95:112508..116308- (Chordaria linearis ClinC8C monoicous)back to top |