mRNA_C-linearis_contig95.16964.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig95.16964.1
Unique NamemRNA_C-linearis_contig95.16964.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A6H5J809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J809_9PHAE)

HSP 1 Score: 361 bits (927), Expect = 3.070e-118
Identity = 186/238 (78.15%), Postives = 206/238 (86.55%), Query Frame = 1
Query:  244 TAALP----PVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALDPIRKAQEQIRIRAQEEFDNVEALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAKASLARKRKG 945
            T+++P    P +  PTSR R +GLG++    LAVA  PGLALDP+RK QEQ+RIRAQEEFDNVEALASPE GKT+QPVL LVPI+ LRLQLDEVESNLKDPR FG AL ILQ QDFQK+DIKRVFNAYSDNIYYLP S+REN+YLQGGATPS+RQTLQYLLRNDVIDNVEALTAEI+YLIRE++    GEADTDEKD+RMYLGKCKQ FDKYLGMV QNEIDEATDMAK +LA KRKG
Sbjct:   62 TSSIPSMSLPAEGGPTSRNRAIGLGVASLFSLAVAPTPGLALDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVESNLKDPRLFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIRERE--VGGEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALANKRKG 297          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: D8LLI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI5_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 6.260e-115
Identity = 178/222 (80.18%), Postives = 193/222 (86.94%), Query Frame = 1
Query:  259 PVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALDPIRKAQEQIRIRAQEEFDNVEALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAA--AGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAK 918
            P +  PTSR R +GLG++    LAVA  PGL LDP+RK QEQ+RIRAQEEFDNVEALASPE GKTIQPVL LVPI+ LRLQLDEVE+NLKDPRRFG AL ILQ QDFQK+DIKRVFNAYSDNIYYLP S+REN+YLQGGATPS+RQTLQYLLRNDVIDNVEALTAEIAYLIRE++       EADTDEKD+RMYLGKCKQ FDKYLGMV QNEIDEATDMAK
Sbjct:    4 PAEGGPTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTIQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESGGEDGSEADTDEKDLRMYLGKCKQGFDKYLGMVLQNEIDEATDMAK 225          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A835ZF78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF78_9STRA)

HSP 1 Score: 134 bits (338), Expect = 3.050e-33
Identity = 80/167 (47.90%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  427 LASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFG--DALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAKA 921
            LA P   KT+ PVL LVPIV LR+ LD VES LK     G   AL +L    +  ++IKR FN YSDNIY   GS R N YL GGA P++++T QYLLRN+V+ +V+ LTAE+AYL+R  D    G  DT   D+  YL   K+ FD YL +    ++D A ++A+A
Sbjct:    3 LADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLR--DGGGVGGGDT--ADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARA 165          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7R9WN96_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN96_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.710e-25
Identity = 89/246 (36.18%), Postives = 127/246 (51.63%), Query Frame = 1
Query:  220 HQQCSVPPTAALPPVDNFPTSRGR----VMGLGLSGWLGLAVAAQPGLALDPIRKAQ-------EQIRIRAQEEFDNVEALASPEAGKT-------IQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEA 903
            HQ  S   +A+   +    T R       +GLGL     +A+   P  A D + K         EQIRI  Q E DN++     EAG           P L L+PI+ +  +L +V+  ++D  R+ DAL I+Q + ++K   K+ FNAY DNIYY    +R N YL GGATP T Q+L YLLRNDV+ NVE L AE+ YL++      +GE +T+  D+  +         KYL +V   E+++A
Sbjct:   90 HQDISTSSSASALNMQKESTDRRSFVQAAVGLGL-----IAMNPTPAQARDDLFKKNPLTNPMLEQIRIWEQAEADNIKYSGELEAGDAGNKGKVDAYPKL-LMPILEIDYELTQVKKLVRDESRWPDALTIMQQKKYEKIPFKKAFNAYGDNIYYSD-PDRANVYLGGGATPKTEQSLAYLLRNDVLTNVENLRAELEYLMK------SGEKETE--DLYKFADIATNAMKKYLAIVPPGELEQA 320          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7S3Q034_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q034_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.490e-24
Identity = 83/237 (35.02%), Postives = 123/237 (51.90%), Query Frame = 1
Query:  244 TAALPPVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALDPI-------RKAQEQIRIRAQEEFDNVEALASPEAGKTI---QPVLTLVPIVALRLQLDEVESNLKDPRRFGDALA----ILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDM 912
            + A+   + F  SR  +M   L   + LA+      A D +        K  E+IRI  Q E DN++       G  I   Q    LVPI+ ++ + DE+++ +  P   GD LA    IL  + ++K   K+ FNA++DNIYY    +R N YL GGA P   Q++ YL+RNDV+ NVE L AE+ YLI+E    A  E +T+  D+ +Y+  CK    KYL +V   E+  A ++
Sbjct:   81 STAMQMKEEFSMSRRSIMSAVLPAAVALALNPVKASARDELFKPNPLTNKVLEKIRILEQAEADNIQYGGELAPGSPIGRDQYAKLLVPIMIIQKEFDELDTLVHMPN--GDGLAQADIILSKKQYEKLQFKKTFNAFADNIYYSD-PDRANAYLGGGAVPKNEQSIAYLIRNDVLTNVENLQAEVTYLIKEI--KAGNEMETE--DLYLYVQTCKDGMVKYLDLVPPGEVKIAKEI 310          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: B5Y3I0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3I0_PHATC)

HSP 1 Score: 113 bits (282), Expect = 1.870e-24
Identity = 79/213 (37.09%), Postives = 117/213 (54.93%), Query Frame = 1
Query:  322 GLAVAAQPGLALDPIRKAQ-------EQIRIRAQEEFDNVEALASPEAG------KTIQPVLTLVPIVALRLQLDEVESNLKDPR-RFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAK 918
            GL ++ +P LA D + +         E+IRI  Q E D+++     E G      K       LVPI+ +  +LDEVE      R  +  A  IL+ + +QK + K+ FNAYSDNIYY    +R N YL GGATP T Q+L YLLRND++ NVEAL +EI YL++E  E++        +D+ +Y     +   +Y+G+V   E+ +A ++ K
Sbjct:   62 GLWLSNEPALAKDDVFRGNPLTNSVLEKIRIWEQAEADDLKYGGELERGDAGNKGKVEAYPRLLVPILQMANELDEVERICLGSRDSWAQAQNILKQKKYQKIEFKKQFNAYSDNIYYSD-PDRANLYLGGGATPKTEQSLAYLLRNDILTNVEALQSEIEYLLKEPSESS--------EDLVLYATTANRAMKRYMGIVPPGELVKARELIK 265          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: B8CC65_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC65_THAPS)

HSP 1 Score: 103 bits (258), Expect = 2.880e-21
Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 1
Query:  379 EQIRIRAQEEFDNVE---ALASPEAGKT--------IQPVLTLVPIVA-LRLQLDEVESNLKDP--RRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEA 903
            E++RI  Q+E DN++    LAS     T        +QP+LT+   +A +   LD+ + N KD     F  A AI++   F K + K+ FNA++DNIYY    +R N YL GGA P   Q+L YLLRNDV+ NVE L AE+ YL++E +   AGE   +  D+   +   K    KYL +V   E++ A
Sbjct:   68 EKLRIWNQDEADNIQYGGELASGSFKPTAFDQYVQLLQPILTVEQSIATIDGLLDKTKLNNKDDYVTAFKKADAIIEQPIFDKINFKKAFNAFADNIYYSD-PDRANLYLGGGAIPKPTQSLAYLLRNDVLTNVEDLRAELTYLMKELNRGGAGEGGVELDDLYSIVKMAKDGMVKYLDLVPPKELEAA 255          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7S0Q4I5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4I5_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 4.410e-21
Identity = 68/191 (35.60%), Postives = 97/191 (50.79%), Query Frame = 1
Query:  217 THQQCSVPPTAALPPVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALD-PIRKAQ-----EQIRIRAQEEFDNVE--ALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAY 765
            TH  C+V      P      T R  + G  L   L  + A   G  L  P R+       E++RI  Q+E D V+     +P    +  P L L+PIV ++  L + +  L D  ++   + +L    F   + KR+FNAY+DNIYY  GSE  N YL GGATPST+QT QYLLRN+ +  +E +  E+ +
Sbjct:   17 THSACNVDALTCDPTTARSATRRQVLHGAALGSLLLPSCATASGFVLAVPPREGLTSRWLEKLRIALQDEADAVQYGGELAPGGPPSTVPGLLLIPIVQMQRVLQKSKPLLDDEGKWPALIEVLTSGPFTTIEFKRIFNAYADNIYYKAGSEEANVYLLGGATPSTKQTNQYLLRNEALKQIEEIVDELKF 207          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A448ZLZ7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLZ7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.620e-21
Identity = 70/189 (37.04%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  379 EQIRIRAQEEFDNVEALASPEAGKT-------IQPVLTLVPIVALRLQLDEVES-------NLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEA 903
            EQ+RI  Q E DN++     E G           P L LVPI+ +  +L+E+ +       N         ALAILQ   ++K + K+ FN Y DNIYY    +R N YL GGATP T Q++ YLLRNDV+ N+E L AE+ YLI+ ++           +D+  Y   C     KYL  V   ++ EA
Sbjct:   97 EQVRIMEQAEKDNIKYGGELERGDAGNKGKVDAYPSL-LVPILKIDKELNEIRTLVRSGGENKPSNEAMSQALAILQQPTYEKVNFKKTFNKYGDNIYYSD-PDRANLYLGGGATPKTEQSIAYLLRNDVLTNMENLRAELEYLIKSEENEI--------EDLYSYADICTSAMKKYLAQVPPQQLKEA 275          
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7S2IB95_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IB95_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.340e-20
Identity = 75/204 (36.76%), Postives = 104/204 (50.98%), Query Frame = 1
Query:  328 AVAAQPGLALDPIRKAQ-------EQIRIRAQEEFDNV----EALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFG--DALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAG--EADTDEKDMRMYLGKCKQDFDKYLGMVFQNEI 894
            +  A+P  A D + K         E++RI  Q E DN+    E       G+     L LVPI+ +   L      ++ P   G   A  IL   +F+K   K++FNA++DNIYY    +R N YL GGATP   Q++ YLLRNDV+ NVEAL AEI YLI++K    AG  E   + +D+ +Y         KYL +V   E+
Sbjct:   81 SAVAEPASARDELFKPNPLTNPVLEKVRIWNQAEADNISYGGELAPGSIKGRAAYAKL-LVPILGIEKDLLAANELVRVPDGKGLTQANDILSKSEFEKISFKKIFNAFADNIYYSD-PDRANLYLGGGATPKNEQSIAYLLRNDVLTNVEALQAEITYLIKQKKNIEAGTEEGPLETEDLYVYAQTAVDGMKKYLELVPPGEL 282          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J809_9PHAE3.070e-11878.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLI5_ECTSI6.260e-11580.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZF78_9STRA3.050e-3347.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9WN96_9STRA1.710e-2536.18Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3Q034_9STRA1.490e-2435.02Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B5Y3I0_PHATC1.870e-2437.09Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B8CC65_THAPS2.880e-2138.62Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0Q4I5_9EUKA4.410e-2135.60Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A448ZLZ7_9STRA8.620e-2137.04Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2IB95_9STRA1.340e-2036.76Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig95contigC-linearis_contig95:102767..105960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.1
Seed ortholog evalue3.2e-95
Seed eggNOG ortholog2880.D8LLI5
Hectar predicted targeting categorychloroplast
EggNOG OGs2E2DA@1,2S9M9@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_001090.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1734
Cds size924
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig95.16964.1prot_C-linearis_contig95.16964.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig95 102800..105183 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930810.5241094-UTR-C-linearis_contig95:102766..1027991622930810.5241094-UTR-C-linearis_contig95:102766..102799Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 102767..102799 +
1690881261.8812475-UTR-C-linearis_contig95:102766..1027991690881261.8812475-UTR-C-linearis_contig95:102766..102799Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 102767..102799 +
1622930810.6486115-UTR-C-linearis_contig95:105183..1059601622930810.6486115-UTR-C-linearis_contig95:105183..105960Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 105184..105960 +
1690881261.9457855-UTR-C-linearis_contig95:105183..1059601690881261.9457855-UTR-C-linearis_contig95:105183..105960Chordaria linearis ClinC8C monoicousUTRC-linearis_contig95 105184..105960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930810.5444338-CDS-C-linearis_contig95:102799..1029281622930810.5444338-CDS-C-linearis_contig95:102799..102928Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 102800..102928 +
1690881261.8942215-CDS-C-linearis_contig95:102799..1029281690881261.8942215-CDS-C-linearis_contig95:102799..102928Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 102800..102928 +
1622930810.5657787-CDS-C-linearis_contig95:103334..1036601622930810.5657787-CDS-C-linearis_contig95:103334..103660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 103335..103660 +
1690881261.905593-CDS-C-linearis_contig95:103334..1036601690881261.905593-CDS-C-linearis_contig95:103334..103660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 103335..103660 +
1622930810.5816612-CDS-C-linearis_contig95:104440..1045771622930810.5816612-CDS-C-linearis_contig95:104440..104577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 104441..104577 +
1690881261.9204583-CDS-C-linearis_contig95:104440..1045771690881261.9204583-CDS-C-linearis_contig95:104440..104577Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 104441..104577 +
1622930810.5990818-CDS-C-linearis_contig95:104851..1051831622930810.5990818-CDS-C-linearis_contig95:104851..105183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 104852..105183 +
1690881261.935951-CDS-C-linearis_contig95:104851..1051831690881261.935951-CDS-C-linearis_contig95:104851..105183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig95 104852..105183 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig95.16964.1

>prot_C-linearis_contig95.16964.1 ID=prot_C-linearis_contig95.16964.1|Name=mRNA_C-linearis_contig95.16964.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=308bp
MFLMHRLLCVVVAAVVTRTHAFHAHTASSFTGASLGEATTHDQVRLPKPP
QKTGNSRRGRATHQQCSVPPTAALPPVDNFPTSRGRVMGLGLSGWLGLAV
AAQPGLALDPIRKAQEQIRIRAQEEFDNVEALASPEAGKTIQPVLTLVPI
VALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYY
LPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKD
EAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAKASLAR
KRKGQQQ*
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mRNA from alignment at C-linearis_contig95:102767..105960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16964.1 ID=mRNA_C-linearis_contig95.16964.1|Name=mRNA_C-linearis_contig95.16964.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3194bp|location=Sequence derived from alignment at C-linearis_contig95:102767..105960+ (Chordaria linearis ClinC8C monoicous)
CCCTAGTTGAGGCGGAGGGGCGGAAGGAGACGGATGTTTCTCATGCATCG ATTATTGTGCGTCGTCGTTGCCGCGGTCGTCACGAGGACACACGCTTTCC ACGCCCATACCGCATCGTCCTTCACCGGGGCGAGCCTAGGAGAGGCGACA ACTCATGATCAGGTGACTTCTTCGCAGAAAGGGAAGGAGGAAGGAGAGCC TGTTCCTGCTCCCAGACGCAGACTTACTGCAACTCATGGAATCCTAGATT GCCCTGTCCTTTCGTCGCTGGCATTTTCTGGGCTGCGGTATTCGCCGCCG GTCGCTCTCTCTCTGCCTCGCTAGATGTAGACTATGTACCATGGTCCACC TACACATGAACATTCGGAAGGTTGTCTCCCTGAGAGGTTCCTCTCCCTAA CGTGCAGTCATAGCGCTCAAAAGACCATCACGAAAGACTAAACACCCCAC CCCACCCCAATCCCCTGTCCAAGCCCGAAAGTCGCACATCGGGTTGACGA TTGACACCGGCACCCCTCTTTCTCCGCCCTGGCCCCGATCACTTGCCGCC GATGTACACGCATACCAGGTACGCCTTCCAAAGCCACCGCAAAAGACAGG GAATAGCAGAAGGGGCAGAGCTACCCACCAGCAATGCTCAGTCCCGCCAA CTGCAGCTCTGCCGCCAGTAGATAACTTCCCCACCAGCCGGGGGCGTGTG ATGGGGCTCGGTCTTTCGGGGTGGTTGGGGTTGGCGGTGGCGGCACAGCC CGGGCTGGCGCTTGACCCCATCCGGAAGGCCCAGGAGCAGATCCGGATCC GAGCGCAAGAGGAGTTCGACAACGTGGAGGCCCTGGCTTCCCCGGAAGCG GGCAAGACGATTCAGCCGGTCTTGACGCTGGTCCCGATCGTCGCGTGAGT CTTGAACTGCTGCTCTGCGTGTGTCTGTTTCAGTTTTTCGGCTCCATTTA TGTACAAGTTGGAACCTCCCTGGCGGTGGTCAGGGTTCGTGTTTCGTGCT TGGTCTCTTTCGGCTGGCATTCTCCGCGACAGACAAGAAGAAAAGGTGCA CACTTACACGGCAGTGTGGCGCCCTAAACGGCTGGGCGCACACGCACGGC CGGGCCTAAGTTTGTGATCAGGCTGCTGCTGCTGCTGCTGCTGCCACACG TCGTGCTTGACTTGCGCTATCATACAGTACCGTTGGCATAGGGAAGGCAA ACCAACCGCCTGCGACTTGCTCGGCCTGCTTCAGAGCCTCAACAAGCCCT CGCGTATTTCGATCAACCGCAACGACAGCAGAAGTAGAACAGTGCCCCTC CGCACAGCAGTCTCTCCTGCTGAATGGTTCAACCAAACCTGACCCTCACC CTAACTCTCTAACCCTAACCCTAACCCAAGTAACCGTGTTGGTTCGAAAA CGGCTAAACGCCACATCACGTCACGTATCATACGTTTTGCAAAGAGGACG GAGATGGTACCGATTGGGAAGAAGCGCTCGAGACGCGCATGCACCCTCGC CGCGCTGTCGACATCTCCTTGCTTTGACAACCTTTCGACCGGATTCCCAA ATGGCACAAGAAATGAAGCTCAACGTCGTCGTCGCCTTTTTCGTTGTCTG TGCGCTCATCTCCATCCCCTCTTCCTTCCTTGCGCCTCCATTGCAACTCT TCCATGCCGTCCCCAAATGCAAAGCCTACGACTGCAGCTGGACGAGGTTG AGAGCAACCTCAAGGACCCACGGCGGTTCGGCGACGCGCTGGCCATCCTG CAGATCCAAGACTTCCAGAAGAGGGACATTAAGCGCGTATTCAACGCGTA CAGCGACAACAGTGAGTGCGAGGCTTGTGCTGTTCGTTGCCAGTTACAAG ACAGCCACAATTTGTCTTCGGGATAAACCAGCTTGTTGTTCTTTTTGTGC TGGTACTCTTTTTGCCGGCACTGCTTGCAAAACCATTGCTTGAGCCAACA TTTGGTTTTCGGTCTTTTGTTTCACCCGCCCCTGGTTTACTTATCATATC ATATGCGCCTTTTAATCGAACGACGTCGGTGCCGTGCGGTGCGGTGCGCG TCCCCCCTCCGATCTAAATTGCAATCCAACCAAAGTCTACTACCTTCCGG GGTCGGAGCGGGAGAACCAGTACCTGCAGGGCGGCGCCACGCCGTCCACC CGCCAGACGCTGCAGTACCTCCTCCGCAACGACGTGATCGACAACGTGGA GGCTCTGACGGCGGAGATCGCGTACCTCATCCGGGAGAAGGATGAGGCGG CGGCGGGGGAGGCGGACACCGACGAGAAGGACATGAGGATGTACCTGGGC AAGTGCAAGCAGGACTTCGACAAGTACCTGGGAATGGTCTTCCAGAACGA GATCGACGAGGCGACGGACATGGCCAAAGCTTCCCTGGCGAGGAAGAGGA AAGGGCAACAGCAGTAGTTAGTTCGGTCAAGACAGGTTAGAACTGATTTT ATCTCCCCGCGAAAATGAAACCGTTCGGCGAAGAGAAGAAGAGACTGCAC CTCGCTCTAGAATGAAGGGAGTTTTTGTTGGCGAGAAAGAACAAGAGCTG CTGGAGTGAGTGGGGAGTTGATCTCCCCGCCAAACACTCTTTTGGCCAAA AAAGAGAGCATCCACGTCAAGCTAAAGCGGGGCTTGGCGTCAAAGTCTGA ATTTTGTTTCTCTTCCCGAAAGCCTCTGACAGCTTCCAACGCGGTTGTTA TTTACCACGCTCTCCGGCCTGGTTTGAGGGTGATTGCTGCGGCTTCACGA TGTAGATGGATGCATTCCTCGAGACCTTCTGCTGGTTATCGTCATCGTTA TCGTCATCATCATCGTCATCGTGTTTTGTTGTGGTCTTGAGGGGATTCTT GTCGCCATAGAAGATAGAGTAGAAGATTGGAATTTGGTACTCTGTAGTTG CTGGGTTTTCGGGAAGTTCGTCCCCATGCCCCCGCAAGAAAAACGCCCTG GCGACCTTGTACCGGTAGTGTGCTGCGGGTCTTGTTGAAGATCGTTCGCC CGGTTAGAGGTGAGTGGTGAGCAAGTCAAAAACCAATACTGAGCAAAAGA GGCAAAATAAAAGGCCCAACACTAAGACTTCCCCACGGCCGACCGGCAAA CGGACTTGGCGACGCTCATTTCTTGCCCGCACCGGTGTGCTCCTACCCTT CGAGACTCGAGAGTGTTGAGCTGCGGAAGTATTCTTATGTAAGT
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Coding sequence (CDS) from alignment at C-linearis_contig95:102767..105960+

>mRNA_C-linearis_contig95.16964.1 ID=mRNA_C-linearis_contig95.16964.1|Name=mRNA_C-linearis_contig95.16964.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at C-linearis_contig95:102767..105960+ (Chordaria linearis ClinC8C monoicous)
ATGTTTCTCATGCATCGATTATTGTGCGTCGTCGTTGCCGCGGTCGTCAC
GAGGACACACGCTTTCCACGCCCATACCGCATCGTCCTTCACCGGGGCGA
GCCTAGGAGAGGCGACAACTCATGATCAGATGTTTCTCATGCATCGATTA
TTGTGCGTCGTCGTTGCCGCGGTCGTCACGAGGACACACGCTTTCCACGC
CCATACCGCATCGTCCTTCACCGGGGCGAGCCTAGGAGAGGCGACAACTC
ATGATCAGGTACGCCTTCCAAAGCCACCGCAAAAGACAGGGAATAGCAGA
AGGGGCAGAGCTACCCACCAGCAATGCTCAGTCCCGCCAACTGCAGCTCT
GCCGCCAGTAGATAACTTCCCCACCAGCCGGGGGCGTGTGATGGGGCTCG
GTCTTTCGGGGTGGTTGGGGTTGGCGGTGGCGGCACAGCCCGGGCTGGCG
CTTGACCCCATCCGGAAGGCCCAGGAGCAGATCCGGATCCGAGCGCAAGA
GGAGTTCGACAACGTGGAGGCCCTGGCTTCCCCGGAAGCGGGCAAGACGA
TTCAGCCGGTCTTGACGCTGGTCCCGATCGTCGCGTACGCCTTCCAAAGC
CACCGCAAAAGACAGGGAATAGCAGAAGGGGCAGAGCTACCCACCAGCAA
TGCTCAGTCCCGCCAACTGCAGCTCTGCCGCCAGTAGATAACTTCCCCAC
CAGCCGGGGGCGTGTGATGGGGCTCGGTCTTTCGGGGTGGTTGGGGTTGG
CGGTGGCGGCACAGCCCGGGCTGGCGCTTGACCCCATCCGGAAGGCCCAG
GAGCAGATCCGGATCCGAGCGCAAGAGGAGTTCGACAACGTGGAGGCCCT
GGCTTCCCCGGAAGCGGGCAAGACGATTCAGCCGGTCTTGACGCTGGTCC
CGATCGTCGCCCTACGACTGCAGCTGGACGAGGTTGAGAGCAACCTCAAG
GACCCACGGCGGTTCGGCGACGCGCTGGCCATCCTGCAGATCCAAGACTT
CCAGAAGAGGGACATTAAGCGCGTATTCAACGCGTACAGCGACAACACCT
ACGACTGCAGCTGGACGAGGTTGAGAGCAACCTCAAGGACCCACGGCGGT
TCGGCGACGCGCTGGCCATCCTGCAGATCCAAGACTTCCAGAAGAGGGAC
ATTAAGCGCGTATTCAACGCGTACAGCGACAACATCTACTACCTTCCGGG
GTCGGAGCGGGAGAACCAGTACCTGCAGGGCGGCGCCACGCCGTCCACCC
GCCAGACGCTGCAGTACCTCCTCCGCAACGACGTGATCGACAACGTGGAG
GCTCTGACGGCGGAGATCGCGTACCTCATCCGGGAGAAGGATGAGGCGGC
GGCGGGGGAGGCGGACACCGACGAGAAGGACATGAGGATGTACCTGGGCA
AGTGCAAGCAGGACTTCGACAAGTACCTGGGAATGGTCTTCCAGAACGAG
ATCGACGAGGCGACGGACATGGCCAAAGCTTCCCTGGCGAGGAAGAGGAA
AGGGCAACAGCAGTAGTCTACTACCTTCCGGGGTCGGAGCGGGAGAACCA
GTACCTGCAGGGCGGCGCCACGCCGTCCACCCGCCAGACGCTGCAGTACC
TCCTCCGCAACGACGTGATCGACAACGTGGAGGCTCTGACGGCGGAGATC
GCGTACCTCATCCGGGAGAAGGATGAGGCGGCGGCGGGGGAGGCGGACAC
CGACGAGAAGGACATGAGGATGTACCTGGGCAAGTGCAAGCAGGACTTCG
ACAAGTACCTGGGAATGGTCTTCCAGAACGAGATCGACGAGGCGACGGAC
ATGGCCAAAGCTTCCCTGGCGAGGAAGAGGAAAGGGCAACAGCAGTAG
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