mRNA_C-linearis_contig95.16964.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A6H5J809_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J809_9PHAE) HSP 1 Score: 361 bits (927), Expect = 3.070e-118 Identity = 186/238 (78.15%), Postives = 206/238 (86.55%), Query Frame = 1 Query: 244 TAALP----PVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALDPIRKAQEQIRIRAQEEFDNVEALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAKASLARKRKG 945
T+++P P + PTSR R +GLG++ LAVA PGLALDP+RK QEQ+RIRAQEEFDNVEALASPE GKT+QPVL LVPI+ LRLQLDEVESNLKDPR FG AL ILQ QDFQK+DIKRVFNAYSDNIYYLP S+REN+YLQGGATPS+RQTLQYLLRNDVIDNVEALTAEI+YLIRE++ GEADTDEKD+RMYLGKCKQ FDKYLGMV QNEIDEATDMAK +LA KRKG
Sbjct: 62 TSSIPSMSLPAEGGPTSRNRAIGLGVASLFSLAVAPTPGLALDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRLQLDEVESNLKDPRLFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIRERE--VGGEADTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALANKRKG 297
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: D8LLI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI5_ECTSI) HSP 1 Score: 350 bits (898), Expect = 6.260e-115 Identity = 178/222 (80.18%), Postives = 193/222 (86.94%), Query Frame = 1 Query: 259 PVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALDPIRKAQEQIRIRAQEEFDNVEALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAA--AGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAK 918
P + PTSR R +GLG++ LAVA PGL LDP+RK QEQ+RIRAQEEFDNVEALASPE GKTIQPVL LVPI+ LRLQLDEVE+NLKDPRRFG AL ILQ QDFQK+DIKRVFNAYSDNIYYLP S+REN+YLQGGATPS+RQTLQYLLRNDVIDNVEALTAEIAYLIRE++ EADTDEKD+RMYLGKCKQ FDKYLGMV QNEIDEATDMAK
Sbjct: 4 PAEGGPTSRSRAIGLGMASLFSLAVAPTPGLGLDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTIQPVLALVPIITLRLQLDEVENNLKDPRRFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSDRENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEIAYLIRERESGGEDGSEADTDEKDLRMYLGKCKQGFDKYLGMVLQNEIDEATDMAK 225
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A835ZF78_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF78_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.050e-33 Identity = 80/167 (47.90%), Postives = 104/167 (62.28%), Query Frame = 1 Query: 427 LASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFG--DALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAKA 921
LA P KT+ PVL LVPIV LR+ LD VES LK G AL +L + ++IKR FN YSDNIY GS R N YL GGA P++++T QYLLRN+V+ +V+ LTAE+AYL+R D G DT D+ YL K+ FD YL + ++D A ++A+A
Sbjct: 3 LADPTGRKTLSPVLALVPIVRLRMGLDLVESWLKLNTTEGWQRALEVLSSSAYSAKEIKRQFNRYSDNIYIEVGSARANAYLDGGAMPTSKETTQYLLRNEVLAHVDELTAELAYLLR--DGGGVGGGDT--ADLYTYLSAAKKSFDDYLQLAPPLDLDGAAEVARA 165
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7R9WN96_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WN96_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.710e-25 Identity = 89/246 (36.18%), Postives = 127/246 (51.63%), Query Frame = 1 Query: 220 HQQCSVPPTAALPPVDNFPTSRGR----VMGLGLSGWLGLAVAAQPGLALDPIRKAQ-------EQIRIRAQEEFDNVEALASPEAGKT-------IQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEA 903
HQ S +A+ + T R +GLGL +A+ P A D + K EQIRI Q E DN++ EAG P L L+PI+ + +L +V+ ++D R+ DAL I+Q + ++K K+ FNAY DNIYY +R N YL GGATP T Q+L YLLRNDV+ NVE L AE+ YL++ +GE +T+ D+ + KYL +V E+++A
Sbjct: 90 HQDISTSSSASALNMQKESTDRRSFVQAAVGLGL-----IAMNPTPAQARDDLFKKNPLTNPMLEQIRIWEQAEADNIKYSGELEAGDAGNKGKVDAYPKL-LMPILEIDYELTQVKKLVRDESRWPDALTIMQQKKYEKIPFKKAFNAYGDNIYYSD-PDRANVYLGGGATPKTEQSLAYLLRNDVLTNVENLRAELEYLMK------SGEKETE--DLYKFADIATNAMKKYLAIVPPGELEQA 320
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7S3Q034_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q034_9STRA) HSP 1 Score: 114 bits (286), Expect = 1.490e-24 Identity = 83/237 (35.02%), Postives = 123/237 (51.90%), Query Frame = 1 Query: 244 TAALPPVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALDPI-------RKAQEQIRIRAQEEFDNVEALASPEAGKTI---QPVLTLVPIVALRLQLDEVESNLKDPRRFGDALA----ILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDM 912
+ A+ + F SR +M L + LA+ A D + K E+IRI Q E DN++ G I Q LVPI+ ++ + DE+++ + P GD LA IL + ++K K+ FNA++DNIYY +R N YL GGA P Q++ YL+RNDV+ NVE L AE+ YLI+E A E +T+ D+ +Y+ CK KYL +V E+ A ++
Sbjct: 81 STAMQMKEEFSMSRRSIMSAVLPAAVALALNPVKASARDELFKPNPLTNKVLEKIRILEQAEADNIQYGGELAPGSPIGRDQYAKLLVPIMIIQKEFDELDTLVHMPN--GDGLAQADIILSKKQYEKLQFKKTFNAFADNIYYSD-PDRANAYLGGGAVPKNEQSIAYLIRNDVLTNVENLQAEVTYLIKEI--KAGNEMETE--DLYLYVQTCKDGMVKYLDLVPPGEVKIAKEI 310
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: B5Y3I0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y3I0_PHATC) HSP 1 Score: 113 bits (282), Expect = 1.870e-24 Identity = 79/213 (37.09%), Postives = 117/213 (54.93%), Query Frame = 1 Query: 322 GLAVAAQPGLALDPIRKAQ-------EQIRIRAQEEFDNVEALASPEAG------KTIQPVLTLVPIVALRLQLDEVESNLKDPR-RFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEATDMAK 918
GL ++ +P LA D + + E+IRI Q E D+++ E G K LVPI+ + +LDEVE R + A IL+ + +QK + K+ FNAYSDNIYY +R N YL GGATP T Q+L YLLRND++ NVEAL +EI YL++E E++ +D+ +Y + +Y+G+V E+ +A ++ K
Sbjct: 62 GLWLSNEPALAKDDVFRGNPLTNSVLEKIRIWEQAEADDLKYGGELERGDAGNKGKVEAYPRLLVPILQMANELDEVERICLGSRDSWAQAQNILKQKKYQKIEFKKQFNAYSDNIYYSD-PDRANLYLGGGATPKTEQSLAYLLRNDILTNVEALQSEIEYLLKEPSESS--------EDLVLYATTANRAMKRYMGIVPPGELVKARELIK 265
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: B8CC65_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC65_THAPS) HSP 1 Score: 103 bits (258), Expect = 2.880e-21 Identity = 73/189 (38.62%), Postives = 104/189 (55.03%), Query Frame = 1 Query: 379 EQIRIRAQEEFDNVE---ALASPEAGKT--------IQPVLTLVPIVA-LRLQLDEVESNLKDP--RRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEA 903
E++RI Q+E DN++ LAS T +QP+LT+ +A + LD+ + N KD F A AI++ F K + K+ FNA++DNIYY +R N YL GGA P Q+L YLLRNDV+ NVE L AE+ YL++E + AGE + D+ + K KYL +V E++ A
Sbjct: 68 EKLRIWNQDEADNIQYGGELASGSFKPTAFDQYVQLLQPILTVEQSIATIDGLLDKTKLNNKDDYVTAFKKADAIIEQPIFDKINFKKAFNAFADNIYYSD-PDRANLYLGGGAIPKPTQSLAYLLRNDVLTNVEDLRAELTYLMKELNRGGAGEGGVELDDLYSIVKMAKDGMVKYLDLVPPKELEAA 255
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7S0Q4I5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4I5_9EUKA) HSP 1 Score: 103 bits (256), Expect = 4.410e-21 Identity = 68/191 (35.60%), Postives = 97/191 (50.79%), Query Frame = 1 Query: 217 THQQCSVPPTAALPPVDNFPTSRGRVMGLGLSGWLGLAVAAQPGLALD-PIRKAQ-----EQIRIRAQEEFDNVE--ALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAY 765
TH C+V P T R + G L L + A G L P R+ E++RI Q+E D V+ +P + P L L+PIV ++ L + + L D ++ + +L F + KR+FNAY+DNIYY GSE N YL GGATPST+QT QYLLRN+ + +E + E+ +
Sbjct: 17 THSACNVDALTCDPTTARSATRRQVLHGAALGSLLLPSCATASGFVLAVPPREGLTSRWLEKLRIALQDEADAVQYGGELAPGGPPSTVPGLLLIPIVQMQRVLQKSKPLLDDEGKWPALIEVLTSGPFTTIEFKRIFNAYADNIYYKAGSEEANVYLLGGATPSTKQTNQYLLRNEALKQIEEIVDELKF 207
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A448ZLZ7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLZ7_9STRA) HSP 1 Score: 103 bits (256), Expect = 8.620e-21 Identity = 70/189 (37.04%), Postives = 96/189 (50.79%), Query Frame = 1 Query: 379 EQIRIRAQEEFDNVEALASPEAGKT-------IQPVLTLVPIVALRLQLDEVES-------NLKDPRRFGDALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAGEADTDEKDMRMYLGKCKQDFDKYLGMVFQNEIDEA 903
EQ+RI Q E DN++ E G P L LVPI+ + +L+E+ + N ALAILQ ++K + K+ FN Y DNIYY +R N YL GGATP T Q++ YLLRNDV+ N+E L AE+ YLI+ ++ +D+ Y C KYL V ++ EA
Sbjct: 97 EQVRIMEQAEKDNIKYGGELERGDAGNKGKVDAYPSL-LVPILKIDKELNEIRTLVRSGGENKPSNEAMSQALAILQQPTYEKVNFKKTFNKYGDNIYYSD-PDRANLYLGGGATPKTEQSIAYLLRNDVLTNMENLRAELEYLIKSEENEI--------EDLYSYADICTSAMKKYLAQVPPQQLKEA 275
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Match: A0A7S2IB95_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IB95_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.340e-20 Identity = 75/204 (36.76%), Postives = 104/204 (50.98%), Query Frame = 1 Query: 328 AVAAQPGLALDPIRKAQ-------EQIRIRAQEEFDNV----EALASPEAGKTIQPVLTLVPIVALRLQLDEVESNLKDPRRFG--DALAILQIQDFQKRDIKRVFNAYSDNIYYLPGSERENQYLQGGATPSTRQTLQYLLRNDVIDNVEALTAEIAYLIREKDEAAAG--EADTDEKDMRMYLGKCKQDFDKYLGMVFQNEI 894
+ A+P A D + K E++RI Q E DN+ E G+ L LVPI+ + L ++ P G A IL +F+K K++FNA++DNIYY +R N YL GGATP Q++ YLLRNDV+ NVEAL AEI YLI++K AG E + +D+ +Y KYL +V E+
Sbjct: 81 SAVAEPASARDELFKPNPLTNPVLEKVRIWNQAEADNISYGGELAPGSIKGRAAYAKL-LVPILGIEKDLLAANELVRVPDGKGLTQANDILSKSEFEKISFKKIFNAFADNIYYSD-PDRANLYLGGGATPKNEQSIAYLLRNDVLTNVEALQAEITYLIKQKKNIEAGTEEGPLETEDLYVYAQTAVDGMKKYLELVPPGEL 282 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16964.1 >prot_C-linearis_contig95.16964.1 ID=prot_C-linearis_contig95.16964.1|Name=mRNA_C-linearis_contig95.16964.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=308bp MFLMHRLLCVVVAAVVTRTHAFHAHTASSFTGASLGEATTHDQVRLPKPPback to top mRNA from alignment at C-linearis_contig95:102767..105960+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16964.1 ID=mRNA_C-linearis_contig95.16964.1|Name=mRNA_C-linearis_contig95.16964.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3194bp|location=Sequence derived from alignment at C-linearis_contig95:102767..105960+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:102767..105960+ >mRNA_C-linearis_contig95.16964.1 ID=mRNA_C-linearis_contig95.16964.1|Name=mRNA_C-linearis_contig95.16964.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1848bp|location=Sequence derived from alignment at C-linearis_contig95:102767..105960+ (Chordaria linearis ClinC8C monoicous)back to top |