mRNA_C-linearis_contig94.16959.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig94.16959.1
Unique NamemRNA_C-linearis_contig94.16959.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig94contigC-linearis_contig94:667292..667664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size373
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig94.16959.1prot_C-linearis_contig94.16959.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig94 667297..667599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.9502335-UTR-C-linearis_contig94:667291..6672961622930801.9502335-UTR-C-linearis_contig94:667291..667296Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 667292..667296 +
1690881257.1160455-UTR-C-linearis_contig94:667291..6672961690881257.1160455-UTR-C-linearis_contig94:667291..667296Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 667292..667296 +
1622930802.0028107-UTR-C-linearis_contig94:667599..6676641622930802.0028107-UTR-C-linearis_contig94:667599..667664Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 667600..667664 +
1690881257.143051-UTR-C-linearis_contig94:667599..6676641690881257.143051-UTR-C-linearis_contig94:667599..667664Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 667600..667664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.9885085-CDS-C-linearis_contig94:667296..6675991622930801.9885085-CDS-C-linearis_contig94:667296..667599Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 667297..667599 +
1690881257.1315963-CDS-C-linearis_contig94:667296..6675991690881257.1315963-CDS-C-linearis_contig94:667296..667599Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 667297..667599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig94.16959.1

>prot_C-linearis_contig94.16959.1 ID=prot_C-linearis_contig94.16959.1|Name=mRNA_C-linearis_contig94.16959.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
MLLGTRACCAGVALLIMPPRRWSNCSLWDDDGHNDHLVGVMGDHCRAGVT
QLQQSHVRVVGGGHAALYTLCVSLTSSSTELVVIPPCPRRTSSLSLFLDA
*
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mRNA from alignment at C-linearis_contig94:667292..667664+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig94.16959.1 ID=mRNA_C-linearis_contig94.16959.1|Name=mRNA_C-linearis_contig94.16959.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=373bp|location=Sequence derived from alignment at C-linearis_contig94:667292..667664+ (Chordaria linearis ClinC8C monoicous)
GTCAGATGCTTCTTGGTACTCGCGCATGCTGTGCAGGCGTTGCATTATTA
ATCATGCCGCCGCGACGATGGTCGAATTGTAGTCTGTGGGACGACGACGG
CCACAATGACCACCTTGTGGGGGTGATGGGTGACCATTGTCGGGCGGGTG
TGACACAACTTCAACAAAGCCACGTACGCGTTGTTGGCGGCGGGCATGCT
GCATTGTATACATTGTGTGTATCATTAACATCGTCCTCTACTGAACTTGT
GGTGATTCCTCCCTGCCCTCGCCGCACCTCCTCCTTGTCATTGTTCCTTG
ACGCATAATGCAACAGGTTTGGTCGTCGTGCACAAAGGCTTCAACATCAT
CAAGGACATCAGGGGGCAAGGCG
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Coding sequence (CDS) from alignment at C-linearis_contig94:667292..667664+

>mRNA_C-linearis_contig94.16959.1 ID=mRNA_C-linearis_contig94.16959.1|Name=mRNA_C-linearis_contig94.16959.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig94:667292..667664+ (Chordaria linearis ClinC8C monoicous)
ATGCTTCTTGGTACTCGCGCATGCTGTGCAGGCGTTGCATTATTAATCAT
GCCGCCGCGACGATGGTCGAATTGTAGTCTGTGGGACGACGACGGCCACA
ATGACCACCTTGTGGGGGTGATGGGTGACCATTGTCGGGCGGGTGTGACA
CAACTTCAACAAAGCCACGTACGCGTTGTTGGCGGCGGGCATGCTGCATT
GTATACATTGTGTGTATCATTAACATCGTCCTCTACTGAACTTGTGGTGA
TTCCTCCCTGCCCTCGCCGCACCTCCTCCTTGTCATTGTTCCTTGACGCA
TAAATGCTTCTTGGTACTCGCGCATGCTGTGCAGGCGTTGCATTATTAAT
CATGCCGCCGCGACGATGGTCGAATTGTAGTCTGTGGGACGACGACGGCC
ACAATGACCACCTTGTGGGGGTGATGGGTGACCATTGTCGGGCGGGTGTG
ACACAACTTCAACAAAGCCACGTACGCGTTGTTGGCGGCGGGCATGCTGC
ATTGTATACATTGTGTGTATCATTAACATCGTCCTCTACTGAACTTGTGG
TGATTCCTCCCTGCCCTCGCCGCACCTCCTCCTTGTCATTGTTCCTTGAC
GCATAA
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