mRNA_C-linearis_contig94.16958.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig94.16958.1
Unique NamemRNA_C-linearis_contig94.16958.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig94contigC-linearis_contig94:662538..663374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size188
Cds size162
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig94.16958.1prot_C-linearis_contig94.16958.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig94 662562..663374 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.73634-UTR-C-linearis_contig94:662537..6625611622930801.73634-UTR-C-linearis_contig94:662537..662561Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 662538..662561 -
1690881257.035687-UTR-C-linearis_contig94:662537..6625611690881257.035687-UTR-C-linearis_contig94:662537..662561Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 662538..662561 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930801.757047-CDS-C-linearis_contig94:662561..6626791622930801.757047-CDS-C-linearis_contig94:662561..662679Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 662562..662679 -
1690881257.0485353-CDS-C-linearis_contig94:662561..6626791690881257.0485353-CDS-C-linearis_contig94:662561..662679Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 662562..662679 -
1622930801.770355-CDS-C-linearis_contig94:663330..6633741622930801.770355-CDS-C-linearis_contig94:663330..663374Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 663331..663374 -
1690881257.0605786-CDS-C-linearis_contig94:663330..6633741690881257.0605786-CDS-C-linearis_contig94:663330..663374Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 663331..663374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig94.16958.1

>prot_C-linearis_contig94.16958.1 ID=prot_C-linearis_contig94.16958.1|Name=mRNA_C-linearis_contig94.16958.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=54bp
TRHVYTDEERHRCNRIFRVPDIHSRKRVLVWRHPGDSGEAPQRLPVTILT
PRP*
back to top

mRNA from alignment at C-linearis_contig94:662538..663374-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig94.16958.1 ID=mRNA_C-linearis_contig94.16958.1|Name=mRNA_C-linearis_contig94.16958.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at C-linearis_contig94:662538..663374- (Chordaria linearis ClinC8C monoicous)
ACGCGCCACGTGTACACGGACGAAGAGAGACACAGGTGCAACAGGTACGT
GGGAAAGTGCGTTTTTCTCTTGCTCGCGCTTTTTTATTTACCCTAGCCTA
CGTGACTCAAAGTTGGTGTGTGTAGCTGGTGGACTCGACAACGTCCTTGC
AAGTTTGTGCCTCTGAAATTTACGCAGAACGCATCTCTCTTAGAGCTCTG
CCGTCAGGACTGCGTTTACATGAACTTATCTGCCGTCATGACTGCGATTG
TTTTAGTTCGCATCCCAGCTCTGCTGGTGTGACTGCGTTTATTTTCGTCT
GCGTTTACACAACCTTGCAGTAGGATCGAAGGCTGTTTGTGTGCTGGGGT
GGGACCTATGTTAACCCACGCGGACCTGCCGGAAGCGCCTCTGGTAAATA
GATTTAACTCGTATATTAGTTGAGTTCCGAGAGAGCTCCGTCACAGGGAG
ACCGGGGTCCCCATAACAGAACAGATTAACATACCACAAACCCAACTGTG
TACCCTCCATAGATCGCCCCAGACCAGGATCTTCACCAAGTACCACAAGC
AAAGGCAGCTGCGGTTGTGACTGCGTTCGCAGCAGGATCATAGGCAGCCC
TGTCGTTGTGACTGCGTTTATTTTAGTTCGCATCGCAGCTCTCCTGGTGT
GACTTGTGTTTTTTTTTGTTCTTCGTTTGCAAAACCTTACAGCAGGATAT
TCAGGGTCCCCGATATACACTCCCGTAAGCGAGTCCTTGTATGGCGGCAC
CCAGGGGATTCCGGGGAAGCGCCTCAGCGTCTCCCGGTTACGATTCTGAC
ACCCCGACCTTGAGCGGCCAGGGCGGCTCCTCTGACG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig94:662538..663374-

>mRNA_C-linearis_contig94.16958.1 ID=mRNA_C-linearis_contig94.16958.1|Name=mRNA_C-linearis_contig94.16958.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at C-linearis_contig94:662538..663374- (Chordaria linearis ClinC8C monoicous)
ACGCGCCACGTGTACACGGACGAAGAGAGACACAGGTGCAACAGACGCGC
CACGTGTACACGGACGAAGAGAGACACAGGTGCAACAGGATATTCAGGGT
CCCCGATATACACTCCCGTAAGCGAGTCCTTGTATGGCGGCACCCAGGGG
ATTCCGGGGAAGCGCCTCAGCGTCTCCCGGTTACGATTCTGACACCCCGA
CCTTGAGATATTCAGGGTCCCCGATATACACTCCCGTAAGCGAGTCCTTG
TATGGCGGCACCCAGGGGATTCCGGGGAAGCGCCTCAGCGTCTCCCGGTT
ACGATTCTGACACCCCGACCTTGA
back to top