mRNA_C-linearis_contig94.16956.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig94.16956.1
Unique NamemRNA_C-linearis_contig94.16956.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 6.110e-31
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANALAVHSSKAVGEAP 220
            QGYGW TMEE SWGDSE+ WVKPGQLFTKGPGT KIPSFNDVP+DMR+KLMDRANA AVHSSKAVGE P
Sbjct: 1364 QGYGWCTMEETSWGDSEHLWVKPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSKAVGEPP 1432
[Close]
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 8.530e-31
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANALAVHSSKAVGEAP 220
            QGYGW TMEE SWGDSE+ WV+PGQLFTKGPGT KIPSFNDVP+DMR+KLMDRANA AVHSSKAVGE P
Sbjct:  474 QGYGWCTMEETSWGDSEHLWVRPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSKAVGEPP 542
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BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A7S3H3T6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3T6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.380e-24
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANALAVHSSKAVGEAP 220
            QG+GW TME++ WGD E+ WV+PGQLFT+GPGT KIPSFNDVPAD R+ L D  N  AVHSSKAVGE P
Sbjct:  806 QGFGWSTMEDLIWGDKEHPWVRPGQLFTRGPGTYKIPSFNDVPADFRVHLSDTDNRFAVHSSKAVGEPP 874
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BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.020e-24
Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRAN-ALAVHSSKAVGEAP 220
            QGYGW TMEE+ WGD++++WV+PGQLFTKGPG  KIPSFNDVP DMR+KLM   N   AVHSSKA+GE P
Sbjct: 1246 QGYGWCTMEELIWGDADHKWVRPGQLFTKGPGAYKIPSFNDVPGDMRVKLMHSVNNPFAVHSSKAIGEPP 1315
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BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A7S2RHM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHM1_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.780e-22
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRA-NALAVHSSKAVGEAP 220
            QG GW TMEE++WGD  + WV+PGQLFT+GPG  KIP+FND P D+R++L+D+A N  AVHSSKAVGE P
Sbjct:  478 QGMGWMTMEELAWGDEAHSWVRPGQLFTRGPGAYKIPAFNDTPVDLRVQLLDKASNPFAVHSSKAVGEPP 547
[Close]
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A1Q9C0G2_SYMMI (Xanthine dehydrogenase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C0G2_SYMMI)

HSP 1 Score: 95.5 bits (236), Expect = 1.000e-20
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
            QG+GW T+EE  WG SE  W+KPG   T+GPGT KIPSFND P DMR+ L+ D AN  A+HSS+AVGE P
Sbjct:   45 QGFGWATLEETVWGCSEFPWLKPGVCMTRGPGTYKIPSFNDTPVDMRVTLVKDSANPNAIHSSRAVGEPP 114
[Close]
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A250XKL5_9CHLO (Xanthine dehydrogenase n=2 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKL5_9CHLO)

HSP 1 Score: 99.8 bits (247), Expect = 3.540e-20
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
            QG GW  +EE+ WGD ++ W++PGQLFT+GPGT KIPS ND+P D R+ L+ D AN  A+HSSKAVGE P
Sbjct: 1249 QGMGWTCIEELQWGDKQHPWIRPGQLFTRGPGTYKIPSVNDIPIDFRVTLLADAANTRAIHSSKAVGEPP 1318
[Close]
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A813RK85_9BILA (Xanthine dehydrogenase n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A813RK85_9BILA)

HSP 1 Score: 98.6 bits (244), Expect = 8.970e-20
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGD-SENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
            QGYG  TMEE+ WGD ++++W KPG LFT+GPGT KIPSFNDVP DMR++L+ D  N LA++SSKA+GE P
Sbjct: 1216 QGYGLFTMEELIWGDQTQHKWTKPGALFTRGPGTYKIPSFNDVPLDMRVELLSDAPNPLAIYSSKAIGEPP 1286
[Close]
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A818ZXG0_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A818ZXG0_9BILA)

HSP 1 Score: 98.2 bits (243), Expect = 1.190e-19
Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGD-SENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
            QGYG  TMEE+ WGD ++++W KPG LFT+GPGT KIPSFNDVP DMR++L+ D  N LA++SSKA+GE P
Sbjct: 1216 QGYGLFTMEELIWGDQTQHKWTKPGGLFTRGPGTYKIPSFNDVPLDMRVELLSDAPNPLAIYSSKAIGEPP 1286
[Close]
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A835XJF6_9CHLO (Xanthine dehydrogenase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJF6_9CHLO)

HSP 1 Score: 98.2 bits (243), Expect = 1.200e-19
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
            QG GW  +EE+ WGD ++ W++PG LFTKGPGT KIPS ND+P D R++L+ D  N  AVHSSKAVGE P
Sbjct: 1253 QGMGWLVLEELMWGDKQHPWIRPGHLFTKGPGTYKIPSVNDIPVDFRVQLLADAPNVRAVHSSKAVGEPP 1322
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4V3_ECTSI6.110e-3186.96Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
A0A6H5JW60_9PHAE8.530e-3185.51Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ec... [more]
A0A7S3H3T6_9STRA1.380e-2471.01Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A836C8N1_9STRA2.020e-2471.43Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2RHM1_9STRA2.780e-2265.71Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Q9C0G2_SYMMI1.000e-2062.86Xanthine dehydrogenase n=1 Tax=Symbiodinium microa... [more]
A0A250XKL5_9CHLO3.540e-2061.43Xanthine dehydrogenase n=2 Tax=Chlamydomonas eusti... [more]
A0A813RK85_9BILA8.970e-2064.79Xanthine dehydrogenase n=4 Tax=Adineta steineri Ta... [more]
A0A818ZXG0_9BILA1.190e-1964.79Hypothetical protein n=3 Tax=Adineta steineri TaxI... [more]
A0A835XJF6_9CHLO1.200e-1961.43Xanthine dehydrogenase n=1 Tax=Edaphochlamys debar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig94contigC-linearis_contig94:494328..495642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue3.4e-24
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons2
Model size742
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig94.16956.1prot_C-linearis_contig94.16956.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig94 494362..495210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.5376055-UTR-C-linearis_contig94:494327..4943611622930807.5376055-UTR-C-linearis_contig94:494327..494361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 494328..494361 +
1690881260.2816386-UTR-C-linearis_contig94:494327..4943611690881260.2816386-UTR-C-linearis_contig94:494327..494361Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 494328..494361 +
1622930807.588267-UTR-C-linearis_contig94:495210..4956421622930807.588267-UTR-C-linearis_contig94:495210..495642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 495211..495642 +
1690881260.3193848-UTR-C-linearis_contig94:495210..4956421690881260.3193848-UTR-C-linearis_contig94:495210..495642Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 495211..495642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930807.557375-CDS-C-linearis_contig94:494361..4945291622930807.557375-CDS-C-linearis_contig94:494361..494529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 494362..494529 +
1690881260.2944684-CDS-C-linearis_contig94:494361..4945291690881260.2944684-CDS-C-linearis_contig94:494361..494529Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 494362..494529 +
1622930807.5741677-CDS-C-linearis_contig94:495102..4952101622930807.5741677-CDS-C-linearis_contig94:495102..495210Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 495103..495210 +
1690881260.3075137-CDS-C-linearis_contig94:495102..4952101690881260.3075137-CDS-C-linearis_contig94:495102..495210Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 495103..495210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig94.16956.1

>prot_C-linearis_contig94.16956.1 ID=prot_C-linearis_contig94.16956.1|Name=mRNA_C-linearis_contig94.16956.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=92bp
MEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANAL
AVHSSKAVGEAPSSWQRPRSSPSRMPSGLPGRTTAKPPSSA*
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mRNA from alignment at C-linearis_contig94:494328..495642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig94.16956.1 ID=mRNA_C-linearis_contig94.16956.1|Name=mRNA_C-linearis_contig94.16956.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1315bp|location=Sequence derived from alignment at C-linearis_contig94:494328..495642+ (Chordaria linearis ClinC8C monoicous)
AGTTTGCTGCCAGCAGGGCTACGGGTGGGGCACGATGGAAGAGATGAGCT
GGGGAGACTCGGAGAACCGGTGGGTCAAGCCGGGGCAGCTCTTCACAAAG
GGCCCAGGAACGTGTAAGATTCCGTCCTTTAACGATGTCCCTGCGGACAT
GAGGATCAAGCTCATGGACCGAGCCAATGCTCTCGCGGTCCACTCCTCCA
AGGCAAGAAAGACCCCCTCCCTTGCACGTCAAAATGTTGTGCACACACAG
CACTGTCACTTGATTTCGAGCGGTGATGCAGTGGTGCTGGCTGGGACTTG
GCCGAAGCTCGTTCGTCGAGCGTTAGACAAACTGATACCCAGGCAATTCA
ACCCGGCCCAGAGGAGTGAATCCTTTGTTGATCTTCGAGGTGTATTACTG
GGCGCCGAAACGAAAGGCCCGCGGTATCATATGCTCGGCAAGCACAAAAG
TTTTTGGTTCCTCTGTCAGATTCTTTGCCGCAATGAACTCCTTCATTGCA
ACATATATGGTGTGCGATCGGATAGTCTCCCCCCTAGCTCCACTCGGCCA
CCTTTGATTTGAGCGCCCCGTCTCTGTGGAGGTTGCACTTTGCCGCTCTC
TGTACACCACGATAATACACGTCACGCGCAACAGTTTCCTCCAGCTCTAG
TTTTCGCCCCCAGATGTCGAGTTTCTCATCCACGTTGTTTTGAGCATGAA
TGGCATTCTGGTGTCTCTCGTAGCCTCGCCTCCTTACTTTGTTGTTTCGT
TTCGCCATACGCTTTGCTGGCTCAGGCCGTCGGAGAGGCCCCTTCTTCAT
GGCAACGTCCGCGTTCTTCGCCATCAAGGATGCCGTCAGGTCTGCCAGGA
AGGACCACGGCGAAACCGCCTTCTTCCGCCTGAATAGCCCCCCTCCTCCG
AAAGGTTAGGCTTGACTACATAAATAGTCGGTCTGCGTCCTCGCCCACAC
AACTATAGCGTTGTCTTAAACCTGGGTTTGTTTTTCAGGATCTACACATA
CTTCGTGCATATGGGTCTTTGGTAGCGTTTTTCCCAATGTCGTGACGTTG
TCGTGACTCCTTCCTTGGCGGAGCTGCAACTACCGTCATGCGTCGTGTAG
CTCTTTACCGGGTAGACAAAAAAAAGAAACGTTGGGTGGCCGCGGGAAGT
TTGAAGCGGTCGTCGTCGACGTCCTGTTGCAGGCAGTCGACATCAACGGC
GAGGATTTTTTGCTCTTGATTTGTGTTCGTTTGGTCGCAGATTCTTTCGA
CCATCGGCCCATTGGGATCGGCGGAAGAACCGCATTATTTACACAACGCC
TGGAGGACGAATACC
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Coding sequence (CDS) from alignment at C-linearis_contig94:494328..495642+

>mRNA_C-linearis_contig94.16956.1 ID=mRNA_C-linearis_contig94.16956.1|Name=mRNA_C-linearis_contig94.16956.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at C-linearis_contig94:494328..495642+ (Chordaria linearis ClinC8C monoicous)
ATGGAAGAGATGAGCTGGGGAGACTCGGAGAACCGGTGGGTCAAGCCGGG
GCAGCTCTTCACAAAGGGCCCAGGAACGTGTAAGATTCCGTCCTTTAACG
ATGTCCCTGCGGACATGAGGATCAAGCTCATGGACCGAGCCAATGCTCTC
GCGGTCCACTCCTCCAAGATGGAAGAGATGAGCTGGGGAGACTCGGAGAA
CCGGTGGGTCAAGCCGGGGCAGCTCTTCACAAAGGGCCCAGGAACGTGTA
AGATTCCGTCCTTTAACGATGTCCCTGCGGACATGAGGATCAAGCTCATG
GACCGAGCCAATGCTCTCGCGGTCCACTCCTCCAAGGCCGTCGGAGAGGC
CCCTTCTTCATGGCAACGTCCGCGTTCTTCGCCATCAAGGATGCCGTCAG
GTCTGCCAGGAAGGACCACGGCGAAACCGCCTTCTTCCGCCTGAGCCGTC
GGAGAGGCCCCTTCTTCATGGCAACGTCCGCGTTCTTCGCCATCAAGGAT
GCCGTCAGGTCTGCCAGGAAGGACCACGGCGAAACCGCCTTCTTCCGCCT
GA
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