mRNA_C-linearis_contig94.16956.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI) HSP 1 Score: 130 bits (328), Expect = 6.110e-31 Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANALAVHSSKAVGEAP 220
QGYGW TMEE SWGDSE+ WVKPGQLFTKGPGT KIPSFNDVP+DMR+KLMDRANA AVHSSKAVGE P
Sbjct: 1364 QGYGWCTMEETSWGDSEHLWVKPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSKAVGEPP 1432
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE) HSP 1 Score: 129 bits (325), Expect = 8.530e-31 Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANALAVHSSKAVGEAP 220
QGYGW TMEE SWGDSE+ WV+PGQLFTKGPGT KIPSFNDVP+DMR+KLMDRANA AVHSSKAVGE P
Sbjct: 474 QGYGWCTMEETSWGDSEHLWVRPGQLFTKGPGTYKIPSFNDVPSDMRVKLMDRANAFAVHSSKAVGEPP 542
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A7S3H3T6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3T6_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.380e-24 Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANALAVHSSKAVGEAP 220
QG+GW TME++ WGD E+ WV+PGQLFT+GPGT KIPSFNDVPAD R+ L D N AVHSSKAVGE P
Sbjct: 806 QGFGWSTMEDLIWGDKEHPWVRPGQLFTRGPGTYKIPSFNDVPADFRVHLSDTDNRFAVHSSKAVGEPP 874
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.020e-24 Identity = 50/70 (71.43%), Postives = 58/70 (82.86%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRAN-ALAVHSSKAVGEAP 220
QGYGW TMEE+ WGD++++WV+PGQLFTKGPG KIPSFNDVP DMR+KLM N AVHSSKA+GE P
Sbjct: 1246 QGYGWCTMEELIWGDADHKWVRPGQLFTKGPGAYKIPSFNDVPGDMRVKLMHSVNNPFAVHSSKAIGEPP 1315
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A7S2RHM1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHM1_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.780e-22 Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRA-NALAVHSSKAVGEAP 220
QG GW TMEE++WGD + WV+PGQLFT+GPG KIP+FND P D+R++L+D+A N AVHSSKAVGE P
Sbjct: 478 QGMGWMTMEELAWGDEAHSWVRPGQLFTRGPGAYKIPAFNDTPVDLRVQLLDKASNPFAVHSSKAVGEPP 547
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A1Q9C0G2_SYMMI (Xanthine dehydrogenase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C0G2_SYMMI) HSP 1 Score: 95.5 bits (236), Expect = 1.000e-20 Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
QG+GW T+EE WG SE W+KPG T+GPGT KIPSFND P DMR+ L+ D AN A+HSS+AVGE P
Sbjct: 45 QGFGWATLEETVWGCSEFPWLKPGVCMTRGPGTYKIPSFNDTPVDMRVTLVKDSANPNAIHSSRAVGEPP 114
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A250XKL5_9CHLO (Xanthine dehydrogenase n=2 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKL5_9CHLO) HSP 1 Score: 99.8 bits (247), Expect = 3.540e-20 Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
QG GW +EE+ WGD ++ W++PGQLFT+GPGT KIPS ND+P D R+ L+ D AN A+HSSKAVGE P
Sbjct: 1249 QGMGWTCIEELQWGDKQHPWIRPGQLFTRGPGTYKIPSVNDIPIDFRVTLLADAANTRAIHSSKAVGEPP 1318
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A813RK85_9BILA (Xanthine dehydrogenase n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A813RK85_9BILA) HSP 1 Score: 98.6 bits (244), Expect = 8.970e-20 Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGD-SENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
QGYG TMEE+ WGD ++++W KPG LFT+GPGT KIPSFNDVP DMR++L+ D N LA++SSKA+GE P
Sbjct: 1216 QGYGLFTMEELIWGDQTQHKWTKPGALFTRGPGTYKIPSFNDVPLDMRVELLSDAPNPLAIYSSKAIGEPP 1286
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A818ZXG0_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A818ZXG0_9BILA) HSP 1 Score: 98.2 bits (243), Expect = 1.190e-19 Identity = 46/71 (64.79%), Postives = 58/71 (81.69%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGD-SENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
QGYG TMEE+ WGD ++++W KPG LFT+GPGT KIPSFNDVP DMR++L+ D N LA++SSKA+GE P
Sbjct: 1216 QGYGLFTMEELIWGDQTQHKWTKPGGLFTRGPGTYKIPSFNDVPLDMRVELLSDAPNPLAIYSSKAIGEPP 1286
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Match: A0A835XJF6_9CHLO (Xanthine dehydrogenase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XJF6_9CHLO) HSP 1 Score: 98.2 bits (243), Expect = 1.200e-19 Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 2 Query: 14 QGYGWGTMEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLM-DRANALAVHSSKAVGEAP 220
QG GW +EE+ WGD ++ W++PG LFTKGPGT KIPS ND+P D R++L+ D N AVHSSKAVGE P
Sbjct: 1253 QGMGWLVLEELMWGDKQHPWIRPGHLFTKGPGTYKIPSVNDIPVDFRVQLLADAPNVRAVHSSKAVGEPP 1322 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig94.16956.1 >prot_C-linearis_contig94.16956.1 ID=prot_C-linearis_contig94.16956.1|Name=mRNA_C-linearis_contig94.16956.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=92bp MEEMSWGDSENRWVKPGQLFTKGPGTCKIPSFNDVPADMRIKLMDRANALback to top mRNA from alignment at C-linearis_contig94:494328..495642+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig94.16956.1 ID=mRNA_C-linearis_contig94.16956.1|Name=mRNA_C-linearis_contig94.16956.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1315bp|location=Sequence derived from alignment at C-linearis_contig94:494328..495642+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig94:494328..495642+ >mRNA_C-linearis_contig94.16956.1 ID=mRNA_C-linearis_contig94.16956.1|Name=mRNA_C-linearis_contig94.16956.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at C-linearis_contig94:494328..495642+ (Chordaria linearis ClinC8C monoicous)back to top |