mRNA_C-linearis_contig94.16953.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig94.16953.1
Unique NamemRNA_C-linearis_contig94.16953.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: D7G4V1_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V1_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 1.090e-143
Identity = 232/299 (77.59%), Postives = 248/299 (82.94%), Query Frame = 3 
Query:  171 LLLPQNS-AFVLPCSSQSRA------GTTAMAMRHSTPPAGEGEGAGMGRAEFLSEAAAATAAVLGIASSGVAGVSP-ASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKENNGRIF 1043
            LLLP ++ AFVL C++  R+      G   M   H       GEG    R +FLS AA   AAVLG++++G  G  P ASALVKGNAPPPGYN KRGSGYGNGEPEA  TA A  ED DPSRTFSVT +GIRFKDLKIG GPEVKP++VVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPL SGRL+SAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEP+PVGYGATRRMARRFDETLIVEVE+V  KE NGRIF
Sbjct:   16 LLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGNG----GEGGSTNRGDFLSGAAVTAAAVLGVSAAGTVGAPPPASALVKGNAPPPGYNKKRGSGYGNGEPEATPTADAGPEDSDPSRTFSVTSSGIRFKDLKIGVGPEVKPANVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLGSGRLISAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMVGAKEGNGRIF 310
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A835YV71_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV71_9STRA)

HSP 1 Score: 240 bits (613), Expect = 2.860e-72
Identity = 128/232 (55.17%), Postives = 156/232 (67.24%), Query Frame = 3 
Query:  378 PASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSRT------------------FSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERG--WKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVV 1013
            PASALVKGNAPP      R       E E   +   + + G+                      F VT+ G+R+KD+ +G G +V   S VD+RYRV KLGKRSY+G+SGE   VFSLGYGEDDDKEG V+TVP+  G+L++AVDE +VGM++GG RRV VRP+RG  WKK DP CA  ID+G+ SG+PGA +AKVEDCID TLEP+PV YGA RRMARRFDE LIVE+E V
Sbjct:   28 PASALVKGNAPPTAEERARKRAEA-AEREKSRSISEAKDAGEKREVEMRSKYETEETALGSDTAFKVTQNGVRYKDIALGAGAQVNKGSTVDLRYRVMKLGKRSYNGLSGEATMVFSLGYGEDDDKEGSVVTVPVGKGKLITAVDEAIVGMKLGGKRRVLVRPDRGQGWKKDDPNCAALIDVGIASGIPGATIAKVEDCIDETLEPRPVSYGAKRRMARRFDEALIVEIEPV 258
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A6H5JW52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW52_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 4.040e-64
Identity = 111/125 (88.80%), Postives = 114/125 (91.20%), Query Frame = 3 
Query:  387 ALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDE 761
            ALVKGNAPPPGYN KRGSGYGNGEPEA  TA A  ED DPSRTFSVT +GIRFKDLKIG G EVKP++VVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPL SGRLVSAVDE
Sbjct:   92 ALVKGNAPPPGYNKKRGSGYGNGEPEATPTADAGPEDSDPSRTFSVTSSGIRFKDLKIGDGAEVKPANVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLGSGRLVSAVDE 216
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S2XW09_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW09_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.320e-54
Identity = 105/223 (47.09%), Postives = 141/223 (63.23%), Query Frame = 3 
Query:  378 PASALVKGNAPPPGYNTKRGSGYGNG-------EPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPK-CATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTK 1022
            P +ALVKG+APP GY   +      G       EP         A +G+     S T +G+RFKD+ +G G EV   S V +RYR+ + GKRSYDGISGE   +F LGYGEDDDK GD L V + SG++V A+++G++G + GGVRRV VRP+ GW+K D + CA ++D+G    VPGA +   E C+DL L P P  + A R++ARRFDE+LI E+EVV  +
Sbjct:    8 PTNALVKGSAPPEGYGKIKSQAPKEGASLDKSAEPSTIAEGSMEAAEGE----LSFTPSGVRFKDMVLGSGQEVGSDSKVSLRYRILRSGKRSYDGISGEGSLIFGLGYGEDDDKVGDTLKVGMGSGKMVKALEDGLIGAKAGGVRRVLVRPDMGWQKSDLEACAPKLDLGATGTVPGA-ITYTEGCMDLDLLPSPRTFQAKRKLARRFDESLIAEIEVVSVE 225
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S2XYV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYV7_9STRA)

HSP 1 Score: 193 bits (490), Expect = 1.040e-53
Identity = 105/223 (47.09%), Postives = 141/223 (63.23%), Query Frame = 3 
Query:  378 PASALVKGNAPPPGYNTKRGSGYGNG-------EPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPK-CATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTK 1022
            P +ALVKG+APP GY   +      G       EP         A +G+     S T +G+RFKD+ +G G EV   S V +RYR+ + GKRSYDGISGE   +F LGYGEDDDK GD L V + SG++V A+++G++G + GGVRRV VRP+ GW+K D + CA ++D+G    VPGA +   E C+DL L P P  + A R++ARRFDE+LI E+EVV  +
Sbjct:   77 PTNALVKGSAPPEGYGKIKSQAPKEGASLDKSAEPSTIAEGSMEAAEGE----LSFTPSGVRFKDMVLGSGQEVGSDSKVSLRYRILRSGKRSYDGISGEGSLIFGLGYGEDDDKVGDTLKVGMGSGKMVKALEDGLIGAKAGGVRRVLVRPDMGWQKSDLEACAPKLDLGATGTVPGA-ITYTEGCMDLDLLPSPRTFQAKRKLARRFDESLIAEIEVVSVE 294
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: L1JF69_GUITC (PPIase FKBP-type domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JF69_GUITC)

HSP 1 Score: 187 bits (475), Expect = 2.270e-52
Identity = 99/221 (44.80%), Postives = 136/221 (61.54%), Query Frame = 3 
Query:  381 ASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSR----------TFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVV 1013
            A ALVKG APPP +  K+        P    T    A++    R           FSVTK G R++D++IG G EVKP S V+++YRV +LGKRS DG+SGE   VFS GYGEDDDKE D L   +    L++A+   + GM+ GG+RR++V+PERGWK +D  C   +D+G   G+PG A+ + E C+D    P P  + A R+++RRFDE L++EVEV+
Sbjct:   10 AQALVKGIAPPPDFGKKKDL------PTKKITNIQEAQEYGAQREATLFDKQDGNFSVTKEGDRYRDVRIGTGAEVKPGSEVEIKYRVLRLGKRSRDGLSGEASLVFSYGYGEDDDKETDTLKFVVGEANLINALSSSLPGMKQGGLRRISVKPERGWKLEDASCVKSVDIGSAVGLPGGAVTEAETCLDYFRVPSPATFQAKRKLSRRFDENLLMEVEVI 224
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A6U4XZ85_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4XZ85_HEMAN)

HSP 1 Score: 181 bits (458), Expect = 7.470e-49
Identity = 98/222 (44.14%), Postives = 140/222 (63.06%), Query Frame = 3 
Query:  381 ASALVKGNAPPPGYNTKRGSGYGNGE---PEAXXTAGASAEDG---DPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDP-KCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKE 1025
            A ALVKG APP GY  ++    G  +    +    AGA  E     + +  F  T +G R++D+K+G G EV     VD++YRV +LGKRS DG+ GE   + S GYGEDDDKE D  T+ +    LV A++E ++G++ GGVRRV+VRPERGW+  D  +C   ID+G + G+PGA++ + ++C+D    P P  + A R++ RRFDET++VEVEVV  +E
Sbjct:   86 AEALVKGVAPPEGYGKRKEKAEGEKKITNKQDALEAGAKKEAEMFENQATDFEKTPSGDRYRDMKVGTGAEVVTGKEVDIKYRVLRLGKRSRDGLGGEASLIMSYGYGEDDDKETDFKTITVGQTPLVLALEESILGIKEGGVRRVSVRPERGWRLPDSSQCGAAIDVGTVLGLPGASVTEADNCLDTNRVPSPTTFQAKRKLGRRFDETVLVEVEVVAVRE 307
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S1E5E0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E5E0_HEMAN)

HSP 1 Score: 173 bits (439), Expect = 3.200e-47
Identity = 82/171 (47.95%), Postives = 118/171 (69.01%), Query Frame = 3 
Query:  516 FSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDP-KCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKE 1025
            F  T +G R++D+K+G G EV     VD++YRV +LGKRS DG+ GE   + S GYGEDDDKE D  T+ +    LV A++E ++G++ GGVRRV+VRPERGW+  D  +C   ID+G + G+PGA++ + ++C+D    P P  + A R++ RRFDET++VEVEVV  +E
Sbjct:   47 FEKTPSGDRYRDMKVGTGAEVVTGKEVDIKYRVLRLGKRSRDGLGGEASLIMSYGYGEDDDKETDFKTITVGQTPLVLALEESILGIKEGGVRRVSVRPERGWRLPDSSQCGAAIDVGTVLGLPGASVTEADNCLDTNRVPSPTTFQAKRKLGRRFDETVLVEVEVVAVRE 217
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A812IG78_9DINO (Peptidylprolyl isomerase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812IG78_9DINO)

HSP 1 Score: 174 bits (441), Expect = 2.500e-46
Identity = 109/234 (46.58%), Postives = 143/234 (61.11%), Query Frame = 3 
Query:  366 AGVSPASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTA--------GASAEDGD----PSRTFSVTKTGIRFKDLKIGGGPE--VKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDV-LTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERG--WKKQDPKCATEID-MGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVV 1013
            AG++ A ALVKG+ PP GY      G G G  EA            GA  E+        +TF VT +G R+KD+K+G   +   K    + +RYRV + GKRSYDG+SGE  ++FSLGYGE DD++ D  L  PL +GR V A+DEG+VGM VGG+RRV VRP+ G  WKK   KCA  I  +G ++G+P A   K   C+D +L P+P  + A RR  RRFDE+LIVE+E+V
Sbjct:   87 AGLASAQALVKGSTPPKGY------GLGKGIKEAADCKSLAECEELGAKREEEKYGTKMEKTFKVTASGARWKDMKVGNEADGVAKVGDDLKLRYRVMRAGKRSYDGVSGEATTLFSLGYGEGDDEKKDATLNAPLGTGRFVKAIDEGLVGMSVGGIRRVQVRPDYGLGWKKPG-KCAEAIGAVGAIAGLPAAGAEKESACLDTSLLPQPEDWNAKRRFERRFDESLIVEMELV 313
[Close]
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S1SCJ5_ALECA (Peptidylprolyl isomerase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SCJ5_ALECA)

HSP 1 Score: 169 bits (427), Expect = 5.020e-45
Identity = 115/267 (43.07%), Postives = 154/267 (57.68%), Query Frame = 3 
Query:  264 PAGEGEGAGMGRAEFLSEAAAATAAVLGIASSGVAGVSPASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTA-----GASAEDGDPSRT--FSVTKTGIRFKDLKIGGGPE--VKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERG--WKKQDPKCATEID-MGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKEN 1028
            PAGE EG G  RA  +  ++A  AA L   S+       A ALVKGNAPP GY   +       + E    A     G   ED   ++   + +T +G R+ D+  G      ++P +V  ++YRV + GKRS DG+SGE   +FSLGYGEDD  +  VLT P+ +GR V A+DEG+VGM VG  RRV VRPE G  W K+   CA E+  +GV+ G+PG      E CID +  P+PV + + RR +RRFDE+LIVEVE+V   E+
Sbjct:    3 PAGEAEGRGR-RAALVGCSSALLAAALAWGSA-------ARALVKGNAPPSGYGVGKNLTE---KAECKFLADCQEIGRKKEDESFTKAVKYELTPSGARYYDMTPGSKEAGVIQPGTVARLKYRVMRQGKRSSDGLSGEASPIFSLGYGEDDGPKDAVLTAPVGTGRFVKALDEGLVGMAVGAKRRVQVRPESGLGWDKEG-NCAEEVKAVGVVGGIPGGGAQNEETCIDASKLPQPVDFASRRRFSRRFDESLIVEVELVGIGES 257
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4V1_ECTSI1.090e-14377.59Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A835YV71_9STRA2.860e-7255.17Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A6H5JW52_9PHAE4.040e-6488.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XW09_9STRA1.320e-5447.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XYV7_9STRA1.040e-5347.09Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
L1JF69_GUITC2.270e-5244.80PPIase FKBP-type domain-containing protein n=3 Tax... [more]
A0A6U4XZ85_HEMAN7.470e-4944.14Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1E5E0_HEMAN3.200e-4747.95Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A812IG78_9DINO2.500e-4646.58Peptidylprolyl isomerase n=4 Tax=Symbiodinium TaxI... [more]
A0A7S1SCJ5_ALECA5.020e-4543.07Peptidylprolyl isomerase n=1 Tax=Alexandrium caten... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig94contigC-linearis_contig94:448258..453234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.3
Seed ortholog evalue9.2e-119
Seed eggNOG ortholog2880.D7G4V1
Hectar predicted targeting categorychloroplast
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
Ec32 ortholog descriptionSecreted FKBP domain protein
Ec32 orthologEc-20_000240.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1641
Cds size915
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930806.7367735-UTR-C-linearis_contig94:448257..4483881622930806.7367735-UTR-C-linearis_contig94:448257..448388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 448258..448388 +
1690881259.8436325-UTR-C-linearis_contig94:448257..4483881690881259.8436325-UTR-C-linearis_contig94:448257..448388Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 448258..448388 +
1622930806.8691046-UTR-C-linearis_contig94:452639..4532341622930806.8691046-UTR-C-linearis_contig94:452639..453234Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 452640..453234 +
1690881259.944872-UTR-C-linearis_contig94:452639..4532341690881259.944872-UTR-C-linearis_contig94:452639..453234Chordaria linearis ClinC8C monoicousUTRC-linearis_contig94 452640..453234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930806.7550888-CDS-C-linearis_contig94:448388..4485301622930806.7550888-CDS-C-linearis_contig94:448388..448530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 448389..448530 +
1690881259.8604531-CDS-C-linearis_contig94:448388..4485301690881259.8604531-CDS-C-linearis_contig94:448388..448530Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 448389..448530 +
1622930806.7672238-CDS-C-linearis_contig94:449230..4494191622930806.7672238-CDS-C-linearis_contig94:449230..449419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 449231..449419 +
1690881259.8748832-CDS-C-linearis_contig94:449230..4494191690881259.8748832-CDS-C-linearis_contig94:449230..449419Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 449231..449419 +
1622930806.7821841-CDS-C-linearis_contig94:449891..4500041622930806.7821841-CDS-C-linearis_contig94:449891..450004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 449892..450004 +
1690881259.8859909-CDS-C-linearis_contig94:449891..4500041690881259.8859909-CDS-C-linearis_contig94:449891..450004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 449892..450004 +
1622930806.7984607-CDS-C-linearis_contig94:450588..4506691622930806.7984607-CDS-C-linearis_contig94:450588..450669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 450589..450669 +
1690881259.8960798-CDS-C-linearis_contig94:450588..4506691690881259.8960798-CDS-C-linearis_contig94:450588..450669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 450589..450669 +
1622930806.8156414-CDS-C-linearis_contig94:451430..4515351622930806.8156414-CDS-C-linearis_contig94:451430..451535Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 451431..451535 +
1690881259.9063444-CDS-C-linearis_contig94:451430..4515351690881259.9063444-CDS-C-linearis_contig94:451430..451535Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 451431..451535 +
1622930806.834836-CDS-C-linearis_contig94:451960..4521011622930806.834836-CDS-C-linearis_contig94:451960..452101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 451961..452101 +
1690881259.9195564-CDS-C-linearis_contig94:451960..4521011690881259.9195564-CDS-C-linearis_contig94:451960..452101Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 451961..452101 +
1622930806.8495317-CDS-C-linearis_contig94:452495..4526391622930806.8495317-CDS-C-linearis_contig94:452495..452639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 452496..452639 +
1690881259.9339437-CDS-C-linearis_contig94:452495..4526391690881259.9339437-CDS-C-linearis_contig94:452495..452639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig94 452496..452639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig94.16953.1prot_C-linearis_contig94.16953.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig94 448389..452639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig94.16953.1

>prot_C-linearis_contig94.16953.1 ID=prot_C-linearis_contig94.16953.1|Name=mRNA_C-linearis_contig94.16953.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=305bp
MVAGFMKHATAVALLLPQNSAFVLPCSSQSRAGTTAMAMRHSTPPAGEGE
GAGMGRAEFLSEAAAATAAVLGIASSGVAGVSPASALVKGNAPPPGYNTK
RGSGYGNGEPEASATAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVK
PSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLN
SGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGV
PGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKENN
GRIF*
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mRNA from alignment at C-linearis_contig94:448258..453234+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig94.16953.1 ID=mRNA_C-linearis_contig94.16953.1|Name=mRNA_C-linearis_contig94.16953.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4977bp|location=Sequence derived from alignment at C-linearis_contig94:448258..453234+ (Chordaria linearis ClinC8C monoicous)
CAAAAATTCTGTCCCACCCTTCGAAAAATTCGCCTTCGACTGTTCGGCGG
CGGTTTGCGTTTGCAGTAACTCTTTCCTTCTCCTATCTGTTTCGCACTAC
TGTACGGATAAGGAACCTGCCGATTTTGACCATGGTGGCAGGCTTCATGA
AGCACGCGACAGCCGTCGCGCTTCTTCTCCCCCAGAACAGCGCTTTCGTC
CTGCCGTGCAGCAGCCAAAGCCGAGCGGGAACAACAGCGATGGCAATGCG
TCACAGCACTCCGCCCGCGGGCGGTGAGAGGATTAGAGGGACAGAGAGCA
CCCTGCTGGCTTGTCAAAGAGCTGAGATATGTTGTTGTGCTTAGTTTTGT
CGTGTATCTAGCCCTAGGTTTGGGCTTACCTTGGCGTCGCTGTGCTGGGA
GTGTACGCATGCAGCAACCTGTGTACAGACGTACTACTACTGCTGTAGGA
TCATGTGACACAGCCGTCGCCTTCGCTGGGATCGACTGGAGCTTTGCATC
AGAAAGGGCGTGCATTCACATAATGTTATCCATGCACCCCCTTGGTCGTG
TGTAGCTCGCGTTTCATGTGGTTGAGATAAGTGGCGGCTGATATGATCAT
ACTTCACGTGTGTTGGGTCATCACCTGCGTGAGTTGGACCAAAAGATCGA
AGAAGAGAGATGGCTCACTCGTTACACCACTTGATGAACAATAGTAATAG
TTCTCGCCCGCCAGAGAAATGAGCCGTTCACCAACGACTCCTGTGAGGCA
TTCAGCAACAACACTGGTAGCACTGACACGTAACTCCTGGCCGTCGTAAT
GCTAAGATTTACCAGAAGAGCAAGCGTTGTGTCATCTAAATTTGCTACAT
TTTGTCCCATTTACCAGAAGCAACCAACCTCTGTCCCGATTAAATCAGAT
TTCTCCGCTTCCACGATGCTATATCGTCTCAACAATCAATGAGCATGTTC
GTATGCCGTATTTCTGCTCCAAGAAGGCGAAGGGGCAGGTATGGGGCGTG
CGGAATTTCTGTCGGAAGCGGCCGCAGCCACGGCAGCCGTGCTTGGAATA
GCTTCCTCCGGCGTGGCTGGCGTAAGCCCGGCCAGCGCGCTTGTCAAGGG
AAACGCGCCGCCGCCGGGGTACAACACGAAACGCGGGAGTGGGTATGGAA
ACGGAGAGCCCGGTGAGGGCCTCGATGCGTTATTAAATGTGTCGGGCCCT
CTGCGGACTTGCGGTTATGCCCAGCGTCGAAACTGCGGCGACAAAAAGCA
ACCATTCATACAGCAGTAGTATACGGAGTAGTGTACAGAGTGGTAGGGTA
GGCGAGGTCCTCGAACATATACCCTGATGTGTTTCCTGTGTTTCCCGGGG
TTTGCGGTTTGCGGTTTGTGGTTTGTGGTGCAGCTAAAAGTTTTCCGACA
TGCGGACGATCAAAGCTTTACGGTATTTTGTGTTCGCCAAGTCCTCAACA
CACACACGCGTGTGCTTTGTCCCAGGGTTCCAGTCGTACCCCCCCCCCCC
CCACACTCCACACACCTCCCACACGCTTACCCCCCATACAGGGGTAGGGC
AAACAGATCTCGCACAAAACTTTAACAAGCACGCCTTGATGTGTTTTCAT
AGTCATTTCATGTGGGGGTCTATCCATCATGCAGAGGCATCTGCCACCGC
CGGGGCTAGCGCGGAGGATGGAGATCCGTCACGTACCTTCTCCGTCACGA
AGACGGGGATACGATTCAAAGACCTCAAGATCGGAGGTGGGCCGGAGGTG
AGATCGAGGGGGATGGGCGGGGCATTTGGTGTCCGGTGTCTCTGGTCTCG
GCGGTGTTACTGTTGTTGCTGCCGCTGGTGCTGTTGCTGGTATTGGAATT
GCTCCTGTTTGGTCAGCAGAGCTTTTTTTCTGGCTGGCGTTGTCGTTGTT
GTTGTTGCACCTCGAAGTTTGTGTCCAGCTGTCAGTATTGGGGGTTTGGT
AGTGCCGTTGTTGCTGTTGTCGTTGCTGCTGCTGCTGCTGCTGCTTCGCG
ATTTTTGAGGTGACGATCGGTTTTCTCGATGGATCTCACCCGATGGGTCA
CTCGATCAATCACTCGATTGATCACTCCATGGATTACCATTACCCTTCAC
CGTTGCCTTTGCCGTCATTATATTGCCATTACTGTCCCTGGTATCAACCC
GCGCAAACACGCGGTTGATGCCGTATTCAGACCAGACCTCAAGCCAGTGC
AAACCCGTGAACAGCAACAATCAAAGGAGAACTGTATGGTGCAACAATGT
CATCAACAACGGCCACATCTTGATGGGTGCTAGTGGCCCCCTTCTTTGTG
TTTTCTCTCTTTCTCCCTCGCCGCCAACCAGGTGAAGCCTTCGAGCGTGG
TGGATATGAGATACCGCGTCGAAAAGCTGGGCAAGAGAAGTTATGATGGG
ATCTCCGGAGAGGTTAGAGCAGATACTCGAAGTATGTATTTCACCGCCTA
TAGTCTTCACAGCCGGATCTTGTTTTCGTCTCTCATCTCTGTGCTGGACC
CAATCACGCACCTTTCCGGAAACATCCACGATGTTCGGGGTTTGAATACC
GAAGACGACACAAGATACCACACTCCCTGGACCGATTTTTCAAAGCTCGG
TAACTCCGCAACGAGTATGATCGCAATACCAAACGACACGTTTTGGACAG
CTCCCAACAAACTTTTTCCAACGACGCCCTTTTTGGGACTGGCGATTTTC
TTGCTGAGGCGTACTTGAGCTTTGAAAACCGGTCCAGGGGGGGGTGTTGT
CTTGTGTCGTCTACGGTAGGCGGCACGAAAAGAACCCCCGGTCGCGCCTC
TCTTGGGCTACACGCGCTTTCGAAGTGTCCACGATCACGTTGCCGTTCCA
ATCGTGTTCCTCTCAAAGAACGTATCTCTCCATGTTGTTACAGACAGTAG
TACGCCACGCTTTCGTTGGTCGGCATGACTGGCTGCCGATCAGCACGCAG
CGACAAGCATTTGCTTTGGAAATGAGCGCTGACGGCGTGGTGCCGACAAC
AACGACAACGACGACTGCTGTAGAGTGATCGTTTCGAAACCTAGCCCTAG
CCAACCGGGTATTGTCTACTGTACCGTGCATCGTTGTGCTCGCTGCGTTG
CCGGTGTTTTGCTGTGTCCGCGCCTCTTGGGGCTCTTCTCGCTTTTTGTG
TCTTTTTATTGGGGTATGAGTAGACGCAGTCGGTGTTTTCGCTGGGGTAC
GGAGAAGACGACGACAAGGAGGGGGACGTCTTGACGGTTCCGCTCAACTC
TGGGAGACTCGTCAGCGCCGTGGACGAGGTAAGTAGTTGTTGTTGTTGTT
GTTCTTGTTGTTGCTGCTGCTGCTGCTGTTGTCATTCGTTGATGTTTTTG
TTGTCGTCTTGGCTGTCGATAAACAAGTACAAGTACCTTGAATTCTGGTT
TTGTTCGCTCAACTCCGGTAACGCTTGCACGTCGAATGGACGGTTTGTCG
GTTTTTCTACCCTTCTTTGGGGTTGCCATGGGTACGCTACTATGGGTTAC
TCTTGGAAACAAGCAAAAGGAGGGATAAGTTAAAAAGACAACAGCAGTGA
CAGAAGAAGACACAACATACTGACAAAGCAGTGCCTCCACGACCCAAACA
CCAAAATGATTTTGTTCCTTCTTGGCCGTCGGGCGCCCGCTGCCTTGAAC
CTATCGTACAACGCCCGTTCTTTGCCGCCGTTTTTTGCTGGTGACATCTT
AAGGGGGTCGTTGGCATGCGCGTCGGGGGGGTGCGGCGAGTGGCGGTCCG
GCCGGAGAGGGGATGGAAGAAGCAGGACCCCAAGTGCGCGACAGAAATAG
ACATGGGGGTTATGTCCGGCGTGCCTGGCGCGGCTCTGGCGAAGGTAAGG
GAGAGACAGAGCGAAGAGGACGGTGCAGGATGGGGGCTTGGGCGTGGCAG
CGACCTTGTCTGGTTATAGGCCTTGGCGCTCGTGTCGTCTGGCTCGCGTG
GTGAAACTTAGTGGGCACTTTTCATCCTTCGAGGCCGCAGAGGTTTTCGA
GGCCTTGGTTGGTTTTCGGCCGTTCGGGAGCGGAAAACATCCCCCCGCTG
TTTGCTGTGGGTGTCAGCTTTTGTTCCCAAGCGCATCGCTATTTCTTACT
CTTTGGCTGGAAATTGTCGACTTTGTGTTGCTCACACCTCTCTGTGTTCT
CGTGTGCTTTAGCTGGAAGAAAACTGTCGACTCCTCGTCCTAAGAGTTGT
CTTGCCTTGTGTCTTGTGTCTCCACTCCCTTGTTGCAGGTGGAAGACTGC
ATCGACCTGACGCTCGAGCCGAAGCCGGTGGGCTACGGGGCGACTCGAAG
GATGGCCCGTCGCTTCGACGAGACGCTCATCGTGGAGGTGGAGGTGGTGG
ACACCAAGGAGAACAACGGAAGAATATTCTGAGAATATTCTGAGGAGATC
CAGGGAGCACATCCTGATTAGACGGGGGGCATGGTCGTATCCGGGGAGTG
TCCACCGTCCAATAGCTCGTGGTTTAGGCTGAAGAGAGACCGGCTTCTGT
CTTGCATGAGATGAACCGCTCGTAATAGACTTAGATATGGGACAGAGAGT
GTGGACCAAAAGTAGGCGGTCCGCAGTGCATTAGCTAGTAGTTTTTGGCT
GAAAGGAGACCGGCTTCTGTCTTGCACCCGATGAAACGATCGTAATAGAC
GTAGACATGGGATAGAGAAAGTGGATCAATAGTTTTGGGTAGAGAGAGAG
AAAAGGTGCCCGCAGTTTTCTGATTGGCCAATTGTTGCCCCAGATACGTA
CACATACACGTAGTCCACATCTTGAGACAGGTTCTGGTGTTCGGCTACCG
TTTTTATCGCCTGCCCAGCAGGACATCCGGAATGCATCGACCGTCAGAGA
GGGGAGTGACCAACACAAAAGGCGGAGAAAACAATGCCGAAGAGCGGTAT
AGAGTCTCGAACTACCGAACGATCAAGCCGTGGGTCTTCACTGCGCCGTT
CCTGCTCAGGCCGAAACGACGGGCAGG
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Coding sequence (CDS) from alignment at C-linearis_contig94:448258..453234+

>mRNA_C-linearis_contig94.16953.1 ID=mRNA_C-linearis_contig94.16953.1|Name=mRNA_C-linearis_contig94.16953.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at C-linearis_contig94:448258..453234+ (Chordaria linearis ClinC8C monoicous)
ATGGTGGCAGGCTTCATGAAGCACGCGACAGCCGTCGCGCTTCTTCTCCC
CCAGAACAGCGCTTTCGTCCTGCCGTGCAGCAGCCAAAGCCGAGCGGGAA
CAACAGCGATGGCAATGCGTCACAGCACTCCGCCCGCGGGCGATGGTGGC
AGGCTTCATGAAGCACGCGACAGCCGTCGCGCTTCTTCTCCCCCAGAACA
GCGCTTTCGTCCTGCCGTGCAGCAGCCAAAGCCGAGCGGGAACAACAGCG
ATGGCAATGCGTCACAGCACTCCGCCCGCGGGCGAAGGCGAAGGGGCAGG
TATGGGGCGTGCGGAATTTCTGTCGGAAGCGGCCGCAGCCACGGCAGCCG
TGCTTGGAATAGCTTCCTCCGGCGTGGCTGGCGTAAGCCCGGCCAGCGCG
CTTGTCAAGGGAAACGCGCCGCCGCCGGGGTACAACACGAAACGCGGGAG
TGGGTATGGAAACGGAGAGCCCGAAGGCGAAGGGGCAGGTATGGGGCGTG
CGGAATTTCTGTCGGAAGCGGCCGCAGCCACGGCAGCCGTGCTTGGAATA
GCTTCCTCCGGCGTGGCTGGCGTAAGCCCGGCCAGCGCGCTTGTCAAGGG
AAACGCGCCGCCGCCGGGGTACAACACGAAACGCGGGAGTGGGTATGGAA
ACGGAGAGCCCGAGGCATCTGCCACCGCCGGGGCTAGCGCGGAGGATGGA
GATCCGTCACGTACCTTCTCCGTCACGAAGACGGGGATACGATTCAAAGA
CCTCAAGATCGGAGGTGGGCCGGAGAGGCATCTGCCACCGCCGGGGCTAG
CGCGGAGGATGGAGATCCGTCACGTACCTTCTCCGTCACGAAGACGGGGA
TACGATTCAAAGACCTCAAGATCGGAGGTGGGCCGGAGGTGAAGCCTTCG
AGCGTGGTGGATATGAGATACCGCGTCGAAAAGCTGGGCAAGAGAAGTTA
TGATGGGATCTCCGGAGAGGTGAAGCCTTCGAGCGTGGTGGATATGAGAT
ACCGCGTCGAAAAGCTGGGCAAGAGAAGTTATGATGGGATCTCCGGAGAG
ACGCAGTCGGTGTTTTCGCTGGGGTACGGAGAAGACGACGACAAGGAGGG
GGACGTCTTGACGGTTCCGCTCAACTCTGGGAGACTCGTCAGCGCCGTGG
ACGAGACGCAGTCGGTGTTTTCGCTGGGGTACGGAGAAGACGACGACAAG
GAGGGGGACGTCTTGACGGTTCCGCTCAACTCTGGGAGACTCGTCAGCGC
CGTGGACGAGGGGGTCGTTGGCATGCGCGTCGGGGGGGTGCGGCGAGTGG
CGGTCCGGCCGGAGAGGGGATGGAAGAAGCAGGACCCCAAGTGCGCGACA
GAAATAGACATGGGGGTTATGTCCGGCGTGCCTGGCGCGGCTCTGGCGAA
GGGGGTCGTTGGCATGCGCGTCGGGGGGGTGCGGCGAGTGGCGGTCCGGC
CGGAGAGGGGATGGAAGAAGCAGGACCCCAAGTGCGCGACAGAAATAGAC
ATGGGGGTTATGTCCGGCGTGCCTGGCGCGGCTCTGGCGAAGGTGGAAGA
CTGCATCGACCTGACGCTCGAGCCGAAGCCGGTGGGCTACGGGGCGACTC
GAAGGATGGCCCGTCGCTTCGACGAGACGCTCATCGTGGAGGTGGAGGTG
GTGGACACCAAGGAGAACAACGGAAGAATATTCTGAGTGGAAGACTGCAT
CGACCTGACGCTCGAGCCGAAGCCGGTGGGCTACGGGGCGACTCGAAGGA
TGGCCCGTCGCTTCGACGAGACGCTCATCGTGGAGGTGGAGGTGGTGGAC
ACCAAGGAGAACAACGGAAGAATATTCTGA
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