mRNA_C-linearis_contig94.16953.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: D7G4V1_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V1_ECTSI) HSP 1 Score: 425 bits (1093), Expect = 1.090e-143 Identity = 232/299 (77.59%), Postives = 248/299 (82.94%), Query Frame = 3 Query: 171 LLLPQNS-AFVLPCSSQSRA------GTTAMAMRHSTPPAGEGEGAGMGRAEFLSEAAAATAAVLGIASSGVAGVSP-ASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKENNGRIF 1043
LLLP ++ AFVL C++ R+ G M H GEG R +FLS AA AAVLG++++G G P ASALVKGNAPPPGYN KRGSGYGNGEPEA TA A ED DPSRTFSVT +GIRFKDLKIG GPEVKP++VVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPL SGRL+SAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEP+PVGYGATRRMARRFDETLIVEVE+V KE NGRIF
Sbjct: 16 LLLPWSTRAFVLHCNANQRSVLGRHEGVVMMETLHGNG----GEGGSTNRGDFLSGAAVTAAAVLGVSAAGTVGAPPPASALVKGNAPPPGYNKKRGSGYGNGEPEATPTADAGPEDSDPSRTFSVTSSGIRFKDLKIGVGPEVKPANVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLGSGRLISAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPRPVGYGATRRMARRFDETLIVEVEMVGAKEGNGRIF 310
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A835YV71_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV71_9STRA) HSP 1 Score: 240 bits (613), Expect = 2.860e-72 Identity = 128/232 (55.17%), Postives = 156/232 (67.24%), Query Frame = 3 Query: 378 PASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSRT------------------FSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERG--WKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVV 1013
PASALVKGNAPP R E E + + + G+ F VT+ G+R+KD+ +G G +V S VD+RYRV KLGKRSY+G+SGE VFSLGYGEDDDKEG V+TVP+ G+L++AVDE +VGM++GG RRV VRP+RG WKK DP CA ID+G+ SG+PGA +AKVEDCID TLEP+PV YGA RRMARRFDE LIVE+E V
Sbjct: 28 PASALVKGNAPPTAEERARKRAEA-AEREKSRSISEAKDAGEKREVEMRSKYETEETALGSDTAFKVTQNGVRYKDIALGAGAQVNKGSTVDLRYRVMKLGKRSYNGLSGEATMVFSLGYGEDDDKEGSVVTVPVGKGKLITAVDEAIVGMKLGGKRRVLVRPDRGQGWKKDDPNCAALIDVGIASGIPGATIAKVEDCIDETLEPRPVSYGAKRRMARRFDEALIVEIEPV 258
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A6H5JW52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW52_9PHAE) HSP 1 Score: 218 bits (555), Expect = 4.040e-64 Identity = 111/125 (88.80%), Postives = 114/125 (91.20%), Query Frame = 3 Query: 387 ALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDE 761
ALVKGNAPPPGYN KRGSGYGNGEPEA TA A ED DPSRTFSVT +GIRFKDLKIG G EVKP++VVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPL SGRLVSAVDE
Sbjct: 92 ALVKGNAPPPGYNKKRGSGYGNGEPEATPTADAGPEDSDPSRTFSVTSSGIRFKDLKIGDGAEVKPANVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLGSGRLVSAVDE 216
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S2XW09_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW09_9STRA) HSP 1 Score: 193 bits (490), Expect = 1.320e-54 Identity = 105/223 (47.09%), Postives = 141/223 (63.23%), Query Frame = 3 Query: 378 PASALVKGNAPPPGYNTKRGSGYGNG-------EPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPK-CATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTK 1022
P +ALVKG+APP GY + G EP A +G+ S T +G+RFKD+ +G G EV S V +RYR+ + GKRSYDGISGE +F LGYGEDDDK GD L V + SG++V A+++G++G + GGVRRV VRP+ GW+K D + CA ++D+G VPGA + E C+DL L P P + A R++ARRFDE+LI E+EVV +
Sbjct: 8 PTNALVKGSAPPEGYGKIKSQAPKEGASLDKSAEPSTIAEGSMEAAEGE----LSFTPSGVRFKDMVLGSGQEVGSDSKVSLRYRILRSGKRSYDGISGEGSLIFGLGYGEDDDKVGDTLKVGMGSGKMVKALEDGLIGAKAGGVRRVLVRPDMGWQKSDLEACAPKLDLGATGTVPGA-ITYTEGCMDLDLLPSPRTFQAKRKLARRFDESLIAEIEVVSVE 225
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S2XYV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYV7_9STRA) HSP 1 Score: 193 bits (490), Expect = 1.040e-53 Identity = 105/223 (47.09%), Postives = 141/223 (63.23%), Query Frame = 3 Query: 378 PASALVKGNAPPPGYNTKRGSGYGNG-------EPEAXXTAGASAEDGDPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPK-CATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTK 1022
P +ALVKG+APP GY + G EP A +G+ S T +G+RFKD+ +G G EV S V +RYR+ + GKRSYDGISGE +F LGYGEDDDK GD L V + SG++V A+++G++G + GGVRRV VRP+ GW+K D + CA ++D+G VPGA + E C+DL L P P + A R++ARRFDE+LI E+EVV +
Sbjct: 77 PTNALVKGSAPPEGYGKIKSQAPKEGASLDKSAEPSTIAEGSMEAAEGE----LSFTPSGVRFKDMVLGSGQEVGSDSKVSLRYRILRSGKRSYDGISGEGSLIFGLGYGEDDDKVGDTLKVGMGSGKMVKALEDGLIGAKAGGVRRVLVRPDMGWQKSDLEACAPKLDLGATGTVPGA-ITYTEGCMDLDLLPSPRTFQAKRKLARRFDESLIAEIEVVSVE 294
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: L1JF69_GUITC (PPIase FKBP-type domain-containing protein n=3 Tax=Guillardia theta TaxID=55529 RepID=L1JF69_GUITC) HSP 1 Score: 187 bits (475), Expect = 2.270e-52 Identity = 99/221 (44.80%), Postives = 136/221 (61.54%), Query Frame = 3 Query: 381 ASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTAGASAEDGDPSR----------TFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDPKCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVV 1013
A ALVKG APPP + K+ P T A++ R FSVTK G R++D++IG G EVKP S V+++YRV +LGKRS DG+SGE VFS GYGEDDDKE D L + L++A+ + GM+ GG+RR++V+PERGWK +D C +D+G G+PG A+ + E C+D P P + A R+++RRFDE L++EVEV+
Sbjct: 10 AQALVKGIAPPPDFGKKKDL------PTKKITNIQEAQEYGAQREATLFDKQDGNFSVTKEGDRYRDVRIGTGAEVKPGSEVEIKYRVLRLGKRSRDGLSGEASLVFSYGYGEDDDKETDTLKFVVGEANLINALSSSLPGMKQGGLRRISVKPERGWKLEDASCVKSVDIGSAVGLPGGAVTEAETCLDYFRVPSPATFQAKRKLSRRFDENLLMEVEVI 224
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A6U4XZ85_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4XZ85_HEMAN) HSP 1 Score: 181 bits (458), Expect = 7.470e-49 Identity = 98/222 (44.14%), Postives = 140/222 (63.06%), Query Frame = 3 Query: 381 ASALVKGNAPPPGYNTKRGSGYGNGE---PEAXXTAGASAEDG---DPSRTFSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDP-KCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKE 1025
A ALVKG APP GY ++ G + + AGA E + + F T +G R++D+K+G G EV VD++YRV +LGKRS DG+ GE + S GYGEDDDKE D T+ + LV A++E ++G++ GGVRRV+VRPERGW+ D +C ID+G + G+PGA++ + ++C+D P P + A R++ RRFDET++VEVEVV +E
Sbjct: 86 AEALVKGVAPPEGYGKRKEKAEGEKKITNKQDALEAGAKKEAEMFENQATDFEKTPSGDRYRDMKVGTGAEVVTGKEVDIKYRVLRLGKRSRDGLGGEASLIMSYGYGEDDDKETDFKTITVGQTPLVLALEESILGIKEGGVRRVSVRPERGWRLPDSSQCGAAIDVGTVLGLPGASVTEADNCLDTNRVPSPTTFQAKRKLGRRFDETVLVEVEVVAVRE 307
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S1E5E0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E5E0_HEMAN) HSP 1 Score: 173 bits (439), Expect = 3.200e-47 Identity = 82/171 (47.95%), Postives = 118/171 (69.01%), Query Frame = 3 Query: 516 FSVTKTGIRFKDLKIGGGPEVKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERGWKKQDP-KCATEIDMGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKE 1025
F T +G R++D+K+G G EV VD++YRV +LGKRS DG+ GE + S GYGEDDDKE D T+ + LV A++E ++G++ GGVRRV+VRPERGW+ D +C ID+G + G+PGA++ + ++C+D P P + A R++ RRFDET++VEVEVV +E
Sbjct: 47 FEKTPSGDRYRDMKVGTGAEVVTGKEVDIKYRVLRLGKRSRDGLGGEASLIMSYGYGEDDDKETDFKTITVGQTPLVLALEESILGIKEGGVRRVSVRPERGWRLPDSSQCGAAIDVGTVLGLPGASVTEADNCLDTNRVPSPTTFQAKRKLGRRFDETVLVEVEVVAVRE 217
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A812IG78_9DINO (Peptidylprolyl isomerase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812IG78_9DINO) HSP 1 Score: 174 bits (441), Expect = 2.500e-46 Identity = 109/234 (46.58%), Postives = 143/234 (61.11%), Query Frame = 3 Query: 366 AGVSPASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTA--------GASAEDGD----PSRTFSVTKTGIRFKDLKIGGGPE--VKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDV-LTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERG--WKKQDPKCATEID-MGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVV 1013
AG++ A ALVKG+ PP GY G G G EA GA E+ +TF VT +G R+KD+K+G + K + +RYRV + GKRSYDG+SGE ++FSLGYGE DD++ D L PL +GR V A+DEG+VGM VGG+RRV VRP+ G WKK KCA I +G ++G+P A K C+D +L P+P + A RR RRFDE+LIVE+E+V
Sbjct: 87 AGLASAQALVKGSTPPKGY------GLGKGIKEAADCKSLAECEELGAKREEEKYGTKMEKTFKVTASGARWKDMKVGNEADGVAKVGDDLKLRYRVMRAGKRSYDGVSGEATTLFSLGYGEGDDEKKDATLNAPLGTGRFVKAIDEGLVGMSVGGIRRVQVRPDYGLGWKKPG-KCAEAIGAVGAIAGLPAAGAEKESACLDTSLLPQPEDWNAKRRFERRFDESLIVEMELV 313
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Match: A0A7S1SCJ5_ALECA (Peptidylprolyl isomerase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SCJ5_ALECA) HSP 1 Score: 169 bits (427), Expect = 5.020e-45 Identity = 115/267 (43.07%), Postives = 154/267 (57.68%), Query Frame = 3 Query: 264 PAGEGEGAGMGRAEFLSEAAAATAAVLGIASSGVAGVSPASALVKGNAPPPGYNTKRGSGYGNGEPEAXXTA-----GASAEDGDPSRT--FSVTKTGIRFKDLKIGGGPE--VKPSSVVDMRYRVEKLGKRSYDGISGETQSVFSLGYGEDDDKEGDVLTVPLNSGRLVSAVDEGVVGMRVGGVRRVAVRPERG--WKKQDPKCATEID-MGVMSGVPGAALAKVEDCIDLTLEPKPVGYGATRRMARRFDETLIVEVEVVDTKEN 1028
PAGE EG G RA + ++A AA L S+ A ALVKGNAPP GY + + E A G ED ++ + +T +G R+ D+ G ++P +V ++YRV + GKRS DG+SGE +FSLGYGEDD + VLT P+ +GR V A+DEG+VGM VG RRV VRPE G W K+ CA E+ +GV+ G+PG E CID + P+PV + + RR +RRFDE+LIVEVE+V E+
Sbjct: 3 PAGEAEGRGR-RAALVGCSSALLAAALAWGSA-------ARALVKGNAPPSGYGVGKNLTE---KAECKFLADCQEIGRKKEDESFTKAVKYELTPSGARYYDMTPGSKEAGVIQPGTVARLKYRVMRQGKRSSDGLSGEASPIFSLGYGEDDGPKDAVLTAPVGTGRFVKALDEGLVGMAVGAKRRVQVRPESGLGWDKEG-NCAEEVKAVGVVGGIPGGGAQNEETCIDASKLPQPVDFASRRRFSRRFDESLIVEVELVGIGES 257 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig94.16953.1 >prot_C-linearis_contig94.16953.1 ID=prot_C-linearis_contig94.16953.1|Name=mRNA_C-linearis_contig94.16953.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=305bp MVAGFMKHATAVALLLPQNSAFVLPCSSQSRAGTTAMAMRHSTPPAGEGEback to top mRNA from alignment at C-linearis_contig94:448258..453234+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig94.16953.1 ID=mRNA_C-linearis_contig94.16953.1|Name=mRNA_C-linearis_contig94.16953.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4977bp|location=Sequence derived from alignment at C-linearis_contig94:448258..453234+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig94:448258..453234+ >mRNA_C-linearis_contig94.16953.1 ID=mRNA_C-linearis_contig94.16953.1|Name=mRNA_C-linearis_contig94.16953.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at C-linearis_contig94:448258..453234+ (Chordaria linearis ClinC8C monoicous)back to top |