mRNA_C-linearis_contig94.16927.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A817Y2J9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817Y2J9_9BILA) HSP 1 Score: 124 bits (311), Expect = 9.840e-29 Identity = 74/182 (40.66%), Postives = 106/182 (58.24%), Query Frame = 1 Query: 304 VDLSPKTVRNWLNRLGITYRAGKHGRKVP-DERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDR----KDLTGFPTGKGQRLIICSAITSQGPL------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEALFPDHKMVLILDNAPYHH 798 +D+S T+ + L+RLG + G P ++ R+R+++ID A AL E G +VYMDESYVN H+ + +WY+ + K + G TGKG RLII AIT G L +T+E+I+ A + + DYHKNM++ F+ WL+ L P F+ LFP KM+L+LDNA YHH Sbjct: 178 IDVSRSTLIDTLHRLGYQFGRGHVISSNPLQDKTPRIRQFIIDYANALKAETHGNSIIVYMDESYVNTRHALNGTWYDSSQPIGNKLIRG--TGKGARLIIIHAITKYGLLHHSHKKDATGVEQTAEMIWSADKAN--GDYHKNMNSTNFLLWLNNYLFPTFQLLFPSKKMILVLDNASYHH 355
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 119 bits (297), Expect = 1.090e-26 Identity = 96/309 (31.07%), Postives = 139/309 (44.98%), Query Frame = 1 Query: 1 EALSERNAIIRTSNLLGYDDDTVRKIIKEFRGNNCEAVPVRDGAARGHGK-------RDQLTAETAHHLVRFFEKAHLTKRSVASKALANMLRNPADVDDMEDRDRVPVDLSPKTVRNWLNRLGITYRAGKHGRKVPD---ERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDR----KDLTGFPTGKGQRLIICSAITSQGPL---------------------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEAL--FPDHKMVLILDNAPYHH 798 E SE A+++ + D VR+I + + + + A G GK R +LT A L F H R V + +A + +++ +R +V L+RLG R G+ K P ER AR+R +L+++ A E AG +VYMDES+V+ H S++ D +D G TGKG R+I+ AIT GPL ET+E ++QA K + DYH M + FM WL+ RL PA+ A+ F KM+L+LDNA YHH Sbjct: 151 EGRSENEAVLQVARTFKIGHDKVRRINNHW----WDHRQLYETTAAGRGKMAKEDDGRRRLTEVQADQLREFINDEHKAGRQVFRRTVAEWVHRTCNMEQPSNR----------SVGGLLSRLGYKRRRGRI--KTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDENGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKFCDGFPIEEGWFKETGSGKKKMEDEETAEFLWQA--KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHH 441
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A6H5KF48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF48_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.320e-25 Identity = 93/279 (33.33%), Postives = 130/279 (46.59%), Query Frame = 1 Query: 46 LGYDDDTVRKIIKEFRGNNCEAVPVRDGAARGHGKRDQLTAETAHHLVRFFEKAHLTKRSVASKALANMLRNPADVDDMEDRDRVPVDLSPKTVRNWLNRLGITYRAGKHGRKVP---DERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDRK----DLTGFPTGKGQRLIICSAITSQGPL---------------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEALFPDHKMVLILDNAPYHH 798 L YD + + + RG +A V DG R +T ET L F + H R V + + + L +++S + V L RLG R G+ K+P +ERK R+R +L+ + A E AG +VYMDES+V+ H + S++ D K D G TGKG R+I+ AIT GPL +T++ ++QA K +YH M TFM WL RL PAF+A F + KM L+LDNA YHH Sbjct: 24 LWYDKQELYETNGKGRG---KANSVDDG-------RRVITKETEDGLNEFIKGEHEAGRQVFRRTVKDYLECS-----------FGLEMSNRAVGGLLQRLGFKRRRGRI--KIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDKGVVQDGIGRTTGKGLRMIMVHAITKHGPLAELQEGFPIREGWFKAKENHEQTAKFLWQA--KLATGEYHDAMTDGTFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHH 277
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 114 bits (286), Expect = 3.030e-25 Identity = 93/303 (30.69%), Postives = 138/303 (45.54%), Query Frame = 1 Query: 10 SERNAIIRTSNLLGYDDDTVRKIIKEFRGNN--CEAVPVRDG--AARGHGKRDQLTAETAHHLVRFFEKAHLTKRSVASKALANMLRNPADVDDMEDRDRVPVDLSPKTVRNWLNRLGITYRAGKHGRKVPD---ERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDR----KDLTGFPTGKGQRLIICSAITSQGPL---------------------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEAL--FPDHKMVLILDNAPYHH 798 SE+ A+++ + D VR+I + + E V G A + G+R +LT L F H R V + +A + +++ +R + L+RLG R G+ K P ER AR+R +L+++ A E AG +VYMDES+V+ H S++ D +D G TGKG R+I+ AIT GPL ET+E ++QA K + DYH M + FM WL+ RL PA+ A+ F +M+L+LDNA YHH Sbjct: 120 SEKEAVLKVARTFKIGHDKVRRINNHWWDHRQLYEITAVGRGKTAKKDDGRR-RLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNR----------SAGGLLSRLGYKRRRGRI--KTPPLNAERLARIRRFLVEMVMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCDGLPIEEGWFKETGSGKKEMEDEETAEFLWQA--KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHH 407
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A816GEQ0_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A816GEQ0_9BILA) HSP 1 Score: 108 bits (270), Expect = 5.010e-24 Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 1 Query: 340 NRLGITYRAGKHGRKVPDE--RKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWY-EKDRKDLTGFPTGKGQRLIICSAITSQGPLE----------TSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEALFPDHK-MVLILDNAPYH 795 +++ ++Y K K+ ++ R R+R++L+ A AL L+K + YMDESYVN H WY + +R LTG TG G+RLII AIT+ G L+ ++ELI++A K+P D+H NMD F W++ L PAFEA + K M+LILDNAPYH Sbjct: 3 DKMKLSYGLLKDSAKLTEDADRIKRIRQFLVKYATALNLQKNKEAVVCYMDESYVNTGHHMHYGWYADANRNILTG--TGVGKRLIIVHAITNDGLLQHFDASTNKTISAELIYEA--KNPTGDFHSNMDGYNFRLWVEQYLFPAFEAKYGHQKRMILILDNAPYH 164
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A816BCJ0_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A816BCJ0_9BILA) HSP 1 Score: 105 bits (261), Expect = 1.800e-23 Identity = 67/169 (39.64%), Postives = 94/169 (55.62%), Query Frame = 1 Query: 337 LNRLGITYRAGKHGRKVPDERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKD----RKDLTGFPTGKGQRLIICSAITSQGPL------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEALFPDHKMVLILDNAPYH 795 L+RL + G P ++ R+R+++ID A A E G + +VYM+ESYVN H+ + +WY+ K + G TGK RLII A+T G L +T E+I+ AG+ + DYHKNMD+ TF+ WLD L P + LF KM+L+LDNA YH Sbjct: 3 LHRLVYQFGRGHVISGNPQDKTPRIRQFIIDYANAFKSEANGDNVIVYMNESYVNTRHALNGTWYDATTPIGNKVIRG--TGKRARLIIVHAMTQHGLLHHTHREGATRVQKTPEMIWTAGKAN--GDYHKNMDSVTFLLWLDKYLFPTLQLLF-SKKMILVLDNASYH 166
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A6H5KKV8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKV8_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.950e-23 Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 1 Query: 304 VDLSPKTVRNWLNRLGITYRAGKHGRKVP---DERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDRK----DLTGFPTGKGQRLIICSAITSQGPL------------------------------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEALFPDHKMVLILDNAPYHH 798 +++S + V L RLG R G+ K+P +ERK R+R +L+ + A E AG +VYMDES+V+ H + S++ D K D G TGKG R+++ AIT GPL +T+E ++QA K DYH M FM WL RL PAF+A F ++KM L+LDNA YH+ Sbjct: 89 LEMSNRAVGGLLQRLGFKRRRGRI--KIPPLNEERKNRIRLFLVKMDLAKRAEDAGVAVIVYMDESFVHQAHGSAYSYFPSDDKGVVQDGIGRTTGKGLRMMMVHAITKHGPLAELQEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQA--KLATGDYHNAMTDGMFMQWLKHRLNPAFDAQFKNNKMFLVLDNASYHY 292
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE) HSP 1 Score: 108 bits (270), Expect = 2.090e-23 Identity = 90/306 (29.41%), Postives = 137/306 (44.77%), Query Frame = 1 Query: 1 EALSERNAIIRTSNLLGYDDDTVRKIIKEFRGNN--CEAVPVRDG--AARGHGKRDQLTAETAHHLVRFFEKAHLTKRSVASKALANMLRNPADVDDMEDRDRVPVDLSPKTVRNWLNRLGITYRAGKHGRKVPD---ERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDRKDLT----GFPTGKGQRLIICSAITSQGPL---------------------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEAL--FPDHKMVLILDNAPYHH 798 E +E A+++ + D VR+I + + E V G A + G+R +LT L F H R V + +A + +++ +R + L+RLG R G+ K P ER AR+R +L+++ A E AG +VY+D S+V+ H S++ D ++ G TGKG R+I+ AIT GPL ET+E ++QA K + DYH M + FM WL+ RL PA+ A+ F +M+L+LDNA YHH Sbjct: 12 EGRAENEAVLQVARTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKDDGRR-RLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNR----------SAEGLLSRLGYKGRRGRI--KTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYIDGSFVHQAHGSPYSYFPADEDEVVQDGIGRTTGKGLRVIMVHAITKWGPLAKLCVGLPIEEGWFKETGSGKREMEDEETAEFLWQA--KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHH 302
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A6H5KDX2_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX2_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.060e-23 Identity = 92/294 (31.29%), Postives = 128/294 (43.54%), Query Frame = 1 Query: 46 LGYDDDTVRKIIKEFRGNNCEAVPVRDGAARGHGKRDQLTAETAHHLVRFFEKAHLTKRSVASKALANMLRNPADVDDMEDRDRVPVDLSPKTVRNWLNRLGITYRAGKHGRKVP---DERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDRKDLT----GFPTGKGQRLIICSAITSQGPL------------------------------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEALFPDHKMVLILDNAPYHH 798 L YD + + + RG +A V DG R +T E L F + H R V + + + L +++S + V L RLG R G+ K+P +ERK R+R +L+ + A E AG +VYMDES+V+ H + S++ D K + G TGKG R+I+ AIT GPL +T+E ++QA K DYH M FM WL RL PAF+A F + KM L+LDNA YHH Sbjct: 145 LWYDKQELYETNGKGRG---KATSVDDG-------RRVITKEQEDGLREFIKGEHEAGRQVFRRTVKDYLECS-----------FGLEMSNRAVGGLLQRLGFKRRRGRI--KIPPLNEERKNRIRLFLVKMDLAKRAEDAGIAVIVYMDESFVHQAHGSAYSYFPSDDKGIVQDGIGRTTGKGLRMIMVHAITEHGPLAELQEGFPIREGWFKAKENRAKKIKPGEADFEMSDEQTAEFLWQA--KLATGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHH 413
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 3.150e-23 Identity = 83/259 (32.05%), Postives = 120/259 (46.33%), Query Frame = 1 Query: 130 AARGHGKRDQLTAETAHHLVRFFEKAHLTKRSVASKALANMLRNPADVDDMEDRDRVPVDLSPKTVRNWLNRLGITYRAGKHGRKVPD---ERKARVREYLIDLAQALALEKAGTHKLVYMDESYVNLNHSRSKSWYEKDR----KDLTGFPTGKGQRLIICSAITSQGPL---------------------------ETSELIFQAGEKSPESDYHKNMDANTFMNWLDLRLKPAFEAL--FPDHKMVLILDNAPYHH 798 A + G+R +LT L F H R V + +A + +++ +R + L+RLG R G+ K P ER AR+R +L+++ A E AG +VYMDES+V+ H S++ D +D G TGKG R+I+ AIT GPL ET+E ++QA K + DYH M + FM WL+ RL PA+ A+ F +M+L+LDNA YHH Sbjct: 47 AKKDDGRR-RLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQPSNR----------SAGGLLSRLGYKRRRGRI--KTPPLNAERLARIRRFLVEMDMAKRAEDAGLAVIVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITKWGPLAKLCDGLPIEEGWFKETGSGKKEMEDEETAEFLWQA--KLAKGDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHH 290 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig94.16927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig94.16927.1 >prot_C-linearis_contig94.16927.1 ID=prot_C-linearis_contig94.16927.1|Name=mRNA_C-linearis_contig94.16927.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=266bp EALSERNAIIRTSNLLGYDDDTVRKIIKEFRGNNCEAVPVRDGAARGHGKback to top mRNA from alignment at C-linearis_contig94:42555..43901- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig94.16927.1 ID=mRNA_C-linearis_contig94.16927.1|Name=mRNA_C-linearis_contig94.16927.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1347bp|location=Sequence derived from alignment at C-linearis_contig94:42555..43901- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig94:42555..43901- >mRNA_C-linearis_contig94.16927.1 ID=mRNA_C-linearis_contig94.16927.1|Name=mRNA_C-linearis_contig94.16927.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at C-linearis_contig94:42555..43901- (Chordaria linearis ClinC8C monoicous)back to top |