mRNA_C-linearis_contig93.16926.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16926.1
Unique NamemRNA_C-linearis_contig93.16926.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5K6V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.290e-15
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:  160 APADQPADTLHVATL-FPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
            AP+D   D LHVA   F +D+    P  L E GP L  G ++++D + +TK RI SG+ ATSG    ALLDSGSP TF+  + L  + A+G AT+ C  T++ R+WGGFG++  L
Sbjct:  205 APSDYDNDILHVAAANFHVDNH---PKVLAEHGPGLVDGIVTVDDASQSTKVRIHSGS-ATSGYRCGALLDSGSPATFVNRNALGNMRATGCATQDCVATNNTRSWGGFGSSQPL 315
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5KUS6_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 9.750e-13
Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 1 
Query:  169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFG 486
            D P D      L    S+ A    L E GPDL GGT+ ++ D+YTT+  +  G TATS +   ALL+SGSP +F++ S +  +IA+GS T      S  R WGGFG
Sbjct:  167 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLNSGSPVSFVSDSVVTAMIAAGSLTAGSVRVSPSRRWGGFG 272
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.130e-12
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 1 
Query:  169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
            D P D      L    S+ A    L E GPDL GGT+ ++ D+YTT+  +  G TATS +   ALLDSGSP +F++ S +  +IA+G+ T         R WGGFG   AL
Sbjct:  583 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVLPFRRWGGFGDGPAL 693
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.750e-12
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:  169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
            + P D      L    S+ A    L E GPDL GGT+ ++ ++YTT+  +  G TATS +   ALLDSGSP +F++ S +  +IA+G+ T      S  R WGGFG   AL
Sbjct:  287 EAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSNSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVSPSRRWGGFGDGPAL 397
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.100e-10
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:  241 LTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
            L E GPDL GGT+ ++  +YTT+  +  G TATS +   ALLDSGSP +F++ S +  +I +G+ T      S  R WGGFG   AL
Sbjct:  312 LLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.160e-10
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:  241 LTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
            L E GPDL GGT+ ++  +YTT+  +  G TATS +   ALLDSGSP +F++ S +  +I +G+ T      S  R WGGFG   AL
Sbjct:  359 LLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 445
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5KUS0_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS0_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.220e-9
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:  241 LTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
            L E GPDL GGT+ ++  +YTT   +  G TATS +   ALLDSGSP +F++ S +  +I +G+ T      S  R WGGFG   AL
Sbjct:  312 LLEHGPDLVGGTLLLDSASYTTWVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.390e-9
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:  169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPR 468
            D P D      L    S+ A    L E GPDL GGT+ ++ D+YTT+  +  G TATS +   ALLDSGSP +F++ S +  +IA+G+ T    V SS R
Sbjct:  804 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPTSFVSDSVVTAMIAAGALTAGSVVPSSSR 903
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 8.100e-9
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:  169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSAT 438
            D P D      L    S+ A    L E GPDL GGT+ ++ D+YTT+  +  G TATS +   ALLDSGSP +F++ S +  +IA+G+ T
Sbjct:  287 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALT 376
[Close]
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5KKX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX5_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.570e-8
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1 
Query:  169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSAT 438
            D P D      L    S+ A    L E GPDL GGT+ ++ D+YTT+  +  G TATS +   ALLDSGSP +F+  S +  +IA+G+ T
Sbjct:   61 DAPGDHAPGVHLVASTSACADQLPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVPDSVVTAMIAAGALT 150
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K6V7_9PHAE1.290e-1545.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KUS6_9PHAE9.750e-1342.45NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JFD5_9PHAE7.130e-1241.44NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JVW3_9PHAE7.750e-1240.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L323_9PHAE3.100e-1044.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JK47_9PHAE3.160e-1044.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUS0_9PHAE1.220e-944.83NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5K8W4_9PHAE1.390e-942.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JDD1_9PHAE8.100e-942.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKX5_9PHAE1.570e-842.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:648150..648650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.7990031-CDS-C-linearis_contig93:648149..6486501622930796.7990031-CDS-C-linearis_contig93:648149..648650Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 648150..648650 +
1690881254.918923-CDS-C-linearis_contig93:648149..6486501690881254.918923-CDS-C-linearis_contig93:648149..648650Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 648150..648650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16926.1prot_C-linearis_contig93.16926.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 648150..648650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16926.1

>prot_C-linearis_contig93.16926.1 ID=prot_C-linearis_contig93.16926.1|Name=mRNA_C-linearis_contig93.16926.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=167bp
AECPDPFRSRLHHPAWRHQLPDSSIHEIVEPAAHASAYPVAANPDPAQAC
FAAAPADQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTY
TTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCE
VTSSPRNWGGFGAANAL
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mRNA from alignment at C-linearis_contig93:648150..648650+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16926.1 ID=mRNA_C-linearis_contig93.16926.1|Name=mRNA_C-linearis_contig93.16926.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at C-linearis_contig93:648150..648650+ (Chordaria linearis ClinC8C monoicous)
GCGGAATGCCCCGACCCTTTCCGTTCCAGACTACACCATCCTGCCTGGCG
CCACCAGCTCCCCGACAGCAGCATTCACGAGATCGTCGAGCCCGCCGCCC
ATGCTTCAGCCTACCCTGTTGCAGCGAACCCAGACCCAGCACAAGCCTGC
TTTGCGGCCGCTCCTGCAGACCAACCTGCCGACACTCTCCACGTAGCCAC
CCTGTTTCCAATGGATTCTTCCGCCGCTGGCCCGACCTGCCTCACCGAGT
TTGGACCTGATCTCACCGGCGGCACCATCTCCATCGAGGACGACACGTAC
ACCACCAAGGCCCGCATCTTCAGCGGCGCCACCGCCACCTCTGGCATGGA
GGTTCGAGCCCTGCTCGACTCCGGCTCTCCGTGCACCTTCATCACCGCCA
GCACCCTGAAACGCCTCATTGCTTCCGGCAGTGCCACGGAAAGCTGCGAG
GTCACCTCCTCTCCTCGCAACTGGGGGGGATTCGGAGCGGCCAACGCTCT
G
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Coding sequence (CDS) from alignment at C-linearis_contig93:648150..648650+

>mRNA_C-linearis_contig93.16926.1 ID=mRNA_C-linearis_contig93.16926.1|Name=mRNA_C-linearis_contig93.16926.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at C-linearis_contig93:648150..648650+ (Chordaria linearis ClinC8C monoicous)
GCGGAATGCCCCGACCCTTTCCGTTCCAGACTACACCATCCTGCCTGGCG
CCACCAGCTCCCCGACAGCAGCATTCACGAGATCGTCGAGCCCGCCGCCC
ATGCTTCAGCCTACCCTGTTGCAGCGAACCCAGACCCAGCACAAGCCTGC
TTTGCGGCCGCTCCTGCAGACCAACCTGCCGACACTCTCCACGTAGCCAC
CCTGTTTCCAATGGATTCTTCCGCCGCTGGCCCGACCTGCCTCACCGAGT
TTGGACCTGATCTCACCGGCGGCACCATCTCCATCGAGGACGACACGTAC
ACCACCAAGGCCCGCATCTTCAGCGGCGCCACCGCCACCTCTGGCATGGA
GGTTCGAGCCCTGCTCGACTCCGGCTCTCCGTGCACCTTCATCACCGCCA
GCACCCTGAAACGCCTCATTGCTTCCGGCAGTGCCACGGAAAGCTGCGAG
GTCACCTCCTCTCCTCGCAACTGGGGGGGATTCGGAGCGGCCAACGCTCT
GGCGGAATGCCCCGACCCTTTCCGTTCCAGACTACACCATCCTGCCTGGC
GCCACCAGCTCCCCGACAGCAGCATTCACGAGATCGTCGAGCCCGCCGCC
CATGCTTCAGCCTACCCTGTTGCAGCGAACCCAGACCCAGCACAAGCCTG
CTTTGCGGCCGCTCCTGCAGACCAACCTGCCGACACTCTCCACGTAGCCA
CCCTGTTTCCAATGGATTCTTCCGCCGCTGGCCCGACCTGCCTCACCGAG
TTTGGACCTGATCTCACCGGCGGCACCATCTCCATCGAGGACGACACGTA
CACCACCAAGGCCCGCATCTTCAGCGGCGCCACCGCCACCTCTGGCATGG
AGGTTCGAGCCCTGCTCGACTCCGGCTCTCCGTGCACCTTCATCACCGCC
AGCACCCTGAAACGCCTCATTGCTTCCGGCAGTGCCACGGAAAGCTGCGA
GGTCACCTCCTCTCCTCGCAACTGGGGGGGATTCGGAGCGGCCAACGCTC
TG
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