mRNA_C-linearis_contig93.16926.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5K6V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6V7_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 1.290e-15 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1 Query: 160 APADQPADTLHVATL-FPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
AP+D D LHVA F +D+ P L E GP L G ++++D + +TK RI SG+ ATSG ALLDSGSP TF+ + L + A+G AT+ C T++ R+WGGFG++ L
Sbjct: 205 APSDYDNDILHVAAANFHVDNH---PKVLAEHGPGLVDGIVTVDDASQSTKVRIHSGS-ATSGYRCGALLDSGSPATFVNRNALGNMRATGCATQDCVATNNTRSWGGFGSSQPL 315
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5KUS6_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS6_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 9.750e-13 Identity = 45/106 (42.45%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFG 486
D P D L S+ A L E GPDL GGT+ ++ D+YTT+ + G TATS + ALL+SGSP +F++ S + +IA+GS T S R WGGFG
Sbjct: 167 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLNSGSPVSFVSDSVVTAMIAAGSLTAGSVRVSPSRRWGGFG 272
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 7.130e-12 Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
D P D L S+ A L E GPDL GGT+ ++ D+YTT+ + G TATS + ALLDSGSP +F++ S + +IA+G+ T R WGGFG AL
Sbjct: 583 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVLPFRRWGGFGDGPAL 693
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JVW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW3_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 7.750e-12 Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 1 Query: 169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
+ P D L S+ A L E GPDL GGT+ ++ ++YTT+ + G TATS + ALLDSGSP +F++ S + +IA+G+ T S R WGGFG AL
Sbjct: 287 EAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSNSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALTAGSVRVSPSRRWGGFGDGPAL 397
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5L323_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L323_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 3.100e-10 Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 241 LTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
L E GPDL GGT+ ++ +YTT+ + G TATS + ALLDSGSP +F++ S + +I +G+ T S R WGGFG AL
Sbjct: 312 LLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JK47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK47_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 3.160e-10 Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 241 LTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
L E GPDL GGT+ ++ +YTT+ + G TATS + ALLDSGSP +F++ S + +I +G+ T S R WGGFG AL
Sbjct: 359 LLEHGPDLVGGTLLLDSASYTTRVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 445
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5KUS0_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS0_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.220e-9 Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 241 LTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPRNWGGFGAANAL 501
L E GPDL GGT+ ++ +YTT + G TATS + ALLDSGSP +F++ S + +I +G+ T S R WGGFG AL
Sbjct: 312 LLEHGPDLVGGTLLLDSASYTTWVLLHGGPTATSQLPRVALLDSGSPASFVSDSVVTAMIDAGALTSGSVRVSPSRRWGGFGDGPAL 398
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 1.390e-9 Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSATESCEVTSSPR 468
D P D L S+ A L E GPDL GGT+ ++ D+YTT+ + G TATS + ALLDSGSP +F++ S + +IA+G+ T V SS R
Sbjct: 804 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPTSFVSDSVVTAMIAAGALTAGSVVPSSSR 903
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5JDD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDD1_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 8.100e-9 Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1 Query: 169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSAT 438
D P D L S+ A L E GPDL GGT+ ++ D+YTT+ + G TATS + ALLDSGSP +F++ S + +IA+G+ T
Sbjct: 287 DAPGDHAPGVHLVASTSACADQPPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVSDSVVTAMIAAGALT 376
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Match: A0A6H5KKX5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX5_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 1.570e-8 Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1 Query: 169 DQPADTLHVATLFPMDSSAAGPTCLTEFGPDLTGGTISIEDDTYTTKARIFSGATATSGMEVRALLDSGSPCTFITASTLKRLIASGSAT 438
D P D L S+ A L E GPDL GGT+ ++ D+YTT+ + G TATS + ALLDSGSP +F+ S + +IA+G+ T
Sbjct: 61 DAPGDHAPGVHLVASTSACADQLPLLEHGPDLVGGTLLLDSDSYTTRVLLHGGPTATSQLARVALLDSGSPASFVPDSVVTAMIAAGALT 150 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16926.1 >prot_C-linearis_contig93.16926.1 ID=prot_C-linearis_contig93.16926.1|Name=mRNA_C-linearis_contig93.16926.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=167bp AECPDPFRSRLHHPAWRHQLPDSSIHEIVEPAAHASAYPVAANPDPAQACback to top mRNA from alignment at C-linearis_contig93:648150..648650+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16926.1 ID=mRNA_C-linearis_contig93.16926.1|Name=mRNA_C-linearis_contig93.16926.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at C-linearis_contig93:648150..648650+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:648150..648650+ >mRNA_C-linearis_contig93.16926.1 ID=mRNA_C-linearis_contig93.16926.1|Name=mRNA_C-linearis_contig93.16926.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at C-linearis_contig93:648150..648650+ (Chordaria linearis ClinC8C monoicous)back to top |