mRNA_C-linearis_contig93.16924.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16924.1
Unique NamemRNA_C-linearis_contig93.16924.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.210e-52
Identity = 81/121 (66.94%), Postives = 92/121 (76.03%), Query Frame = 1
Query:    1 LCCWTENDGLGMIDNTDVCRA-------GGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETKG--GTFMGCTRNDLR 336
            +CCWTENDG GM DNTDVCR          TEYPGESEGEVHCHGFVWP++ATD YIHLLAQFVQ F H + RGY+GNI G+ MCGC+EEM +++EADCTTY+   G  G F  CT NDLR
Sbjct:  342 MCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLR 462          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 2.500e-51
Identity = 81/121 (66.94%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 LCCWTENDGLGMIDNTDVCRA-------GGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETKG--GTFMGCTRNDLR 336
            +CCWTENDG GM DNTDVCR          TEYPGESEGEVHCHGFVWP++ATD YIHLLAQFVQ F H + RGY+GNI G+ MCGC+EEM +++EADCTTY+   G  G F  CT+NDLR
Sbjct:  299 MCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLR 419          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 2.090e-50
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 LCCWTENDGLGMIDNTDVCRA------GGT-EYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNET--KGGTFMGCTRNDLR 336
            +CCWTENDG GM DNTDVCR       G T E+PG+SEGEVHCHGFVWP++ATD YIHLL+QFVQ F H + RGYYGNI G+ MCGC+EEM  ++EADCTTY+    + G F  CT+NDLR
Sbjct:  328 MCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLR 448          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 6.550e-48
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1
Query:    1 LCCWTENDGLGMIDNTDVCR------AGGT-EYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETKGGT--FMGCTRNDLR 336
            +CCWTEND  G++DNTDVCR      AG T EYPG+SEG+VHCHG VWP++ATD YIHLLAQ+VQTF H  N+GYYGNI G+ MCGC E+M E+++ADCT Y+ T+       GC  NDLR
Sbjct:  276 MCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLR 396          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.620e-40
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 LCCWTENDGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETK--GGTFMGCTRNDLR 336
            +CCW   +GL + DNTDVC   G E+PG+SEG VHCHGFVWP+NA+D +I  LA  V    H + + Y GNIPG+ +C C+EEM E++ ADCT Y +    G  FM C++NDLR
Sbjct:   65 MCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 178          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.470e-39
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 LCCWTENDGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETK--GGTFMGCTRNDLR 336
            +CCW   +GL + DNTDVC   G E+PG+SEG VHCHGFVWP+NA+D +I  LA  V    H + + Y GNIPG+ +C C+EEM E++ ADCT Y +    G  FM C++NDLR
Sbjct:  129 MCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 242          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.380e-36
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    1 LCCWTENDGLGMI-DNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNET--KGGTFMGCTRNDLR 336
            +CCW+   G   + DNTDV R G TE+PGESEG+VHCHG VWP+ ++D YI  LA  V    H   +GY+G+IPG+ +C C+E M E++ +DC+ Y     KG  FM C +NDLR
Sbjct:    1 MCCWSSRVGEEPVSDNTDVYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 6.560e-23
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 LCCWTEND-GLGMIDNTDVCR--AGGTEYPGESEGEVHCHGFVWPQNA-TDGYIHLLAQFVQTFAHTNNRG-YYGNIPGSLMCGCVEEMAEITEADCTTYN 288
            +CC+T +D G G+  NTDVC   + G E PG+SEG V+CHGF WP+ A  + +I  L  +V+    T   G YYGN+ G+  CGC+EEM +++ A+C+ ++
Sbjct:   44 MCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFS 144          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: A0A6H5JSN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.640e-20
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 LCCWTEN-DGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYG 210
            +CCW+   +   + DNTDVCR   TE+PGESEG+VHCHG+VWP+ ++D YI  LA  V    H   +GY+G
Sbjct:    1 MCCWSNRVEEEPVSDNTDVCRYESTEFPGESEGDVHCHGWVWPEGSSDDYIEYLALDVAYINHVEEKGYFG 71          
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.180e-17
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 LCCWTEND-GLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNA-TDGYIHLLAQFVQTFAHTNNRG-YYGNIPGSLMCGCVEEMAEITEADCTTYN 288
            +CC+T +D G G+  NTDVC          +EG V+CHGF WP  A  + +I  L  +V+    T   G YYG++ G+  CGC+EEM +++ A+C+ ++
Sbjct:   51 MCCFTNHDSGEGVTANTDVCSV-------PNEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFD 142          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G2N0_ECTSI1.210e-5266.94Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D7G2N2_ECTSI2.500e-5166.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT55_ECTSI2.090e-5065.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT54_ECTSI6.550e-4861.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G8D2_ECTSI2.620e-4052.63Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G8C5_ECTSI1.470e-3952.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LHS4_ECTSI1.380e-3649.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FT53_ECTSI6.560e-2343.56Imm downregulated 17 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JSN0_9PHAE4.640e-2050.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9G6_9PHAE2.180e-1738.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:556106..556879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.1e-42
Seed eggNOG ortholog2880.D7G2N1
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0FN@1,2S7W7@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size336
Cds size336
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16924.1prot_C-linearis_contig93.16924.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 556106..556879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930800.0261874-CDS-C-linearis_contig93:556105..5561531622930800.0261874-CDS-C-linearis_contig93:556105..556153Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 556106..556153 +
1690881256.478-CDS-C-linearis_contig93:556105..5561531690881256.478-CDS-C-linearis_contig93:556105..556153Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 556106..556153 +
1622930800.0451853-CDS-C-linearis_contig93:556376..5565401622930800.0451853-CDS-C-linearis_contig93:556376..556540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 556377..556540 +
1690881256.4951153-CDS-C-linearis_contig93:556376..5565401690881256.4951153-CDS-C-linearis_contig93:556376..556540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 556377..556540 +
1622930800.0641446-CDS-C-linearis_contig93:556755..5568791622930800.0641446-CDS-C-linearis_contig93:556755..556879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 556756..556879 +
1690881256.5041757-CDS-C-linearis_contig93:556755..5568791690881256.5041757-CDS-C-linearis_contig93:556755..556879Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 556756..556879 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16924.1

>prot_C-linearis_contig93.16924.1 ID=prot_C-linearis_contig93.16924.1|Name=mRNA_C-linearis_contig93.16924.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp
LCCWTENDGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYI
HLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETKG
GTFMGCTRNDLR
back to top

mRNA from alignment at C-linearis_contig93:556106..556879+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16924.1 ID=mRNA_C-linearis_contig93.16924.1|Name=mRNA_C-linearis_contig93.16924.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=774bp|location=Sequence derived from alignment at C-linearis_contig93:556106..556879+ (Chordaria linearis ClinC8C monoicous)
TTGTGCTGCTGGACGGAGAACGACGGCCTTGGGATGATTGACAACACGGT ACGTGGTGAATGTTTTGCTCTTGGTCTACTAAGCAGAGTTCGGCGCAACC GTGTGGAGTGACGTCGTGTCCCGTTTCAGGCGCCGCTCTTTGTGGTGGCG TCTCCCGCCAATTTGCAGTCTTTCGTGTCTATAATCGAAACAACGATCAT CGTGGAATGATAAACAAACTTGTTCATTTGACATCACACGAGCTGGTTTC GATAATTGTCTTCCCTTGTAGGACGTCTGCCGCGCAGGCGGGACGGAGTA TCCCGGCGAGAGTGAAGGAGAGGTGCACTGCCACGGTTTCGTGTGGCCAC AGAACGCCACCGACGGGTATATCCACCTCCTCGCCCAGTTCGTGCAGACC TTCGCCCACACGAACAACAGGGGCTACTACGGAAAGTAAGTACGTCTCGC AGACGACATAGATTTTGTGATTCAAGACCCTTTTTCAGCGAGACCATCGG CCATCGCCGCTTACAGGCCATGTGAATCAGTCGACAGTAGTTGAAACTTC CCTTCGTTGCGGGCTTGACTATGCCACCCAAGACAATAAAGCAACTATGT TGGCTCACTCATCCCGACCCGGTGCGCCACTGCGACTGTATTCGCTTCAG CATCCCGGGTTCTCTGATGTGTGGGTGCGTGGAAGAGATGGCGGAAATCA CGGAGGCTGATTGCACCACCTATAACGAGACCAAGGGCGGCACGTTCATG GGGTGCACCAGAAACGACCTTCGC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig93:556106..556879+

>mRNA_C-linearis_contig93.16924.1 ID=mRNA_C-linearis_contig93.16924.1|Name=mRNA_C-linearis_contig93.16924.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig93:556106..556879+ (Chordaria linearis ClinC8C monoicous)
TTGTGCTGCTGGACGGAGAACGACGGCCTTGGGATGATTGACAACACGTT
GTGCTGCTGGACGGAGAACGACGGCCTTGGGATGATTGACAACACGGACG
TCTGCCGCGCAGGCGGGACGGAGTATCCCGGCGAGAGTGAAGGAGAGGTG
CACTGCCACGGTTTCGTGTGGCCACAGAACGCCACCGACGGGTATATCCA
CCTCCTCGCCCAGTTCGTGCAGACCTTCGCCCACACGAACAACAGGGGCT
ACTACGGAAAGACGTCTGCCGCGCAGGCGGGACGGAGTATCCCGGCGAGA
GTGAAGGAGAGGTGCACTGCCACGGTTTCGTGTGGCCACAGAACGCCACC
GACGGGTATATCCACCTCCTCGCCCAGTTCGTGCAGACCTTCGCCCACAC
GAACAACAGGGGCTACTACGGAAACATCCCGGGTTCTCTGATGTGTGGGT
GCGTGGAAGAGATGGCGGAAATCACGGAGGCTGATTGCACCACCTATAAC
GAGACCAAGGGCGGCACGTTCATGGGGTGCACCAGAAACGACCTTCGCCA
TCCCGGGTTCTCTGATGTGTGGGTGCGTGGAAGAGATGGCGGAAATCACG
GAGGCTGATTGCACCACCTATAACGAGACCAAGGGCGGCACGTTCATGGG
GTGCACCAGAAACGACCTTCGC
back to top