mRNA_C-linearis_contig93.16924.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 181 bits (458), Expect = 1.210e-52 Identity = 81/121 (66.94%), Postives = 92/121 (76.03%), Query Frame = 1 Query: 1 LCCWTENDGLGMIDNTDVCRA-------GGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETKG--GTFMGCTRNDLR 336
+CCWTENDG GM DNTDVCR TEYPGESEGEVHCHGFVWP++ATD YIHLLAQFVQ F H + RGY+GNI G+ MCGC+EEM +++EADCTTY+ G G F CT NDLR
Sbjct: 342 MCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLR 462
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 181 bits (460), Expect = 2.500e-51 Identity = 81/121 (66.94%), Postives = 93/121 (76.86%), Query Frame = 1 Query: 1 LCCWTENDGLGMIDNTDVCRA-------GGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETKG--GTFMGCTRNDLR 336
+CCWTENDG GM DNTDVCR TEYPGESEGEVHCHGFVWP++ATD YIHLLAQFVQ F H + RGY+GNI G+ MCGC+EEM +++EADCTTY+ G G F CT+NDLR
Sbjct: 299 MCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLR 419
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 174 bits (442), Expect = 2.090e-50 Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 1 Query: 1 LCCWTENDGLGMIDNTDVCRA------GGT-EYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNET--KGGTFMGCTRNDLR 336
+CCWTENDG GM DNTDVCR G T E+PG+SEGEVHCHGFVWP++ATD YIHLL+QFVQ F H + RGYYGNI G+ MCGC+EEM ++EADCTTY+ + G F CT+NDLR
Sbjct: 328 MCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLR 448
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 167 bits (422), Expect = 6.550e-48 Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 1 Query: 1 LCCWTENDGLGMIDNTDVCR------AGGT-EYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETKGGT--FMGCTRNDLR 336
+CCWTEND G++DNTDVCR AG T EYPG+SEG+VHCHG VWP++ATD YIHLLAQ+VQTF H N+GYYGNI G+ MCGC E+M E+++ADCT Y+ T+ GC NDLR
Sbjct: 276 MCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLR 396
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 141 bits (356), Expect = 2.620e-40 Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 1 LCCWTENDGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETK--GGTFMGCTRNDLR 336
+CCW +GL + DNTDVC G E+PG+SEG VHCHGFVWP+NA+D +I LA V H + + Y GNIPG+ +C C+EEM E++ ADCT Y + G FM C++NDLR
Sbjct: 65 MCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 178
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 141 bits (356), Expect = 1.470e-39 Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1 Query: 1 LCCWTENDGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNETK--GGTFMGCTRNDLR 336
+CCW +GL + DNTDVC G E+PG+SEG VHCHGFVWP+NA+D +I LA V H + + Y GNIPG+ +C C+EEM E++ ADCT Y + G FM C++NDLR
Sbjct: 129 MCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLR 242
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI) HSP 1 Score: 129 bits (325), Expect = 1.380e-36 Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 1 Query: 1 LCCWTENDGLGMI-DNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYGNIPGSLMCGCVEEMAEITEADCTTYNET--KGGTFMGCTRNDLR 336
+CCW+ G + DNTDV R G TE+PGESEG+VHCHG VWP+ ++D YI LA V H +GY+G+IPG+ +C C+E M E++ +DC+ Y KG FM C +NDLR
Sbjct: 1 MCCWSSRVGEEPVSDNTDVYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDLR 115
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 6.560e-23 Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1 Query: 1 LCCWTEND-GLGMIDNTDVCR--AGGTEYPGESEGEVHCHGFVWPQNA-TDGYIHLLAQFVQTFAHTNNRG-YYGNIPGSLMCGCVEEMAEITEADCTTYN 288
+CC+T +D G G+ NTDVC + G E PG+SEG V+CHGF WP+ A + +I L +V+ T G YYGN+ G+ CGC+EEM +++ A+C+ ++
Sbjct: 44 MCCYTNHDSGEGVTANTDVCSVPSEGLEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFS 144
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: A0A6H5JSN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN0_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 4.640e-20 Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 1 Query: 1 LCCWTEN-DGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIHLLAQFVQTFAHTNNRGYYG 210
+CCW+ + + DNTDVCR TE+PGESEG+VHCHG+VWP+ ++D YI LA V H +GY+G
Sbjct: 1 MCCWSNRVEEEPVSDNTDVCRYESTEFPGESEGDVHCHGWVWPEGSSDDYIEYLALDVAYINHVEEKGYFG 71
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 2.180e-17 Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 1 LCCWTEND-GLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNA-TDGYIHLLAQFVQTFAHTNNRG-YYGNIPGSLMCGCVEEMAEITEADCTTYN 288
+CC+T +D G G+ NTDVC +EG V+CHGF WP A + +I L +V+ T G YYG++ G+ CGC+EEM +++ A+C+ ++
Sbjct: 51 MCCFTNHDSGEGVTANTDVCSV-------PNEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFD 142 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16924.1 >prot_C-linearis_contig93.16924.1 ID=prot_C-linearis_contig93.16924.1|Name=mRNA_C-linearis_contig93.16924.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=112bp LCCWTENDGLGMIDNTDVCRAGGTEYPGESEGEVHCHGFVWPQNATDGYIback to top mRNA from alignment at C-linearis_contig93:556106..556879+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16924.1 ID=mRNA_C-linearis_contig93.16924.1|Name=mRNA_C-linearis_contig93.16924.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=774bp|location=Sequence derived from alignment at C-linearis_contig93:556106..556879+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:556106..556879+ >mRNA_C-linearis_contig93.16924.1 ID=mRNA_C-linearis_contig93.16924.1|Name=mRNA_C-linearis_contig93.16924.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at C-linearis_contig93:556106..556879+ (Chordaria linearis ClinC8C monoicous)back to top |