mRNA_C-linearis_contig93.16923.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16923.1
Unique NamemRNA_C-linearis_contig93.16923.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: A0A6H5KLE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE3_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 1.870e-73
Identity = 135/299 (45.15%), Postives = 174/299 (58.19%), Query Frame = 1
Query:    1 DLTAAEFDNHVPKQFEPWVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAG----CMGRGVPGHVIS-RMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVYFTIIYHTLSSAVGAYFRARGMPCPVWLDDFYITNYRRTKDDPPVEQELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRTGPSR 882
            D+TAA F NHVP +   WV+ ++A L  +  I KW  VAD  + PKPHLV+PLGVE  KPRL  DARWLNLM    PF   G G    C  +G     I  +  +   +      +   F     +     +         IY +LS AV  Y RAR +P   W+DDFY+TN+R T+     EQ  AA    +  L VFY+AGYF+S+KK  L PTT  VFLG+ C + + RFEVP DK+ KL+AI++ AI+S  I+F MLEKL GKC S++VAVP A LYTH+MY  +  +QRTG  R
Sbjct:   65 DITAAHFPNHVPDEHAAWVTSEVAALAATGCIAKWRDVADVAIHPKPHLVLPLGVEPKKPRLIWDARWLNLMCLHSPFSMDGVGKVAQCAWQGAHQVTIDHKAGYHHVALDPDSWQYFGFEWEGEMYVFTVLAFGWCSAPFIYSSLSEAVARYLRARDIPVLTWIDDFYLTNFRSTRMLSSKEQFQAALTAAYVALEVFYRAGYFLSIKKSELSPTTCLVFLGIICDAERGRFEVPEDKLAKLDAILTDAISSQVISFQMLEKLVGKCVSLSVAVPVAALYTHHMYKSLTVYQRTGGRR 363          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 8.660e-44
Identity = 104/291 (35.74%), Postives = 150/291 (51.55%), Query Frame = 1
Query:   13 AEFDNHVPKQFEPWVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGR-GVPGHVISRMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVY----FTIIYHTLSSAVGAYFRARGMPCPVWLDDFYITNYRRTKDDPPVEQELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRT 870
            A F N +P +F P+V  ++  L+    + KWS V       +P L+M L VEE+KPRL  DAR LN   +R+PF       +     P   ++ +  S       +   S  +LG     V  V   + +       +YHTLS A  A+ R+ G+P   +LDD ++TN   T+  P  EQ LAA    H  + V Y  G F+S KKC   PTT   +LGM C S    F VP DK+D +  I+  ++A+  I+F  L+++AGK TSMTVA+  A LYT  M+A +   +R+
Sbjct:   61 AVFPNRIPSKFVPFVESELQSLVARGCVAKWSDVKGPAGPVRPRLIMALSVEETKPRLIYDARPLNQFFKRMPFSMDTVARVANVASPRCYMTSLDDSSAFHHILIRPSSWPLLGFEYGGVDYVWCVLPFGLSISPFVYHTLSEAKAAFLRSLGIPALAYLDDSFLTNLEGTQGQPAREQWLAACEATHISVLVSYFCGNFLSPKKCDWRPTTVQKYLGMLCDSATATFRVPQDKLDAVHDILKESLAAGNISFRTLQRVAGKVTSMTVAIRPASLYTQAMFAALAALERS 351          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.820e-40
Identity = 101/306 (33.01%), Postives = 152/306 (49.67%), Query Frame = 1
Query:   19 FDNHV-PKQFEPWVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQ---------GGAGCMGRGVPG-----HVISRMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVYFT--IIYHTLSSAVGAYFRARGMPCPVWLDDFYITNYRRTKDDPPVEQELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRTGPSRV 885
            F NH  P +F+ +V  ++  LL    I +W+ V  +T   +P ++M L VE SKPRL  DAR LN   R+IPF             +GC    +       HV+ R    P            F L  + +     VL   +     +YHTLS A  A+ R++G P   +LDD + +N+  T   P  +Q LAA    H  +      G F+S+KKC L P T   +LG+ C S    F +P +K+DKL  ++  A+A  ++++  L+++AGKC SMTVA+  A L+TH M+A +    +T   +V
Sbjct:  156 FSNHRWPPKFDSFVDAEMQSLLARGCISRWADVKSSTGPVRPRMIMALSVETSKPRLIYDARPLNSCTRKIPFAMDTVARVASVASSGCYMTSLDDSSAFHHVLLRPSSWPL-----------FGLSYKGVDYCWCVLPFGFSLSPYVYHTLSEAKAAFQRSKGAPSLAYLDDSWRSNFLATYGRPAQDQWLAAGEATHVAMLTSLFCGQFLSLKKCELRPVTAIQYLGIICDSETMTFRIPQEKLDKLHGLLRTALADGSVSYRTLQRVAGKCMSMTVAIRPASLWTHAMFAVLSAMDKTNQRQV 450          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: UPI001CF36FDE (uncharacterized protein LOC114956330 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF36FDE)

HSP 1 Score: 122 bits (305), Expect = 1.540e-27
Identity = 96/304 (31.58%), Postives = 146/304 (48.03%), Query Frame = 1
Query:   19 FDNHVP-KQFEPWVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGRGVPGHVISRMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVYFTI---------IYHTLSSAVGAYFRARGMPCPVWLDDFY---ITNYRRTKDDPPVEQEL-----AAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIA-SSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRTG 873
            F NH   K+F  +VS++I K +++  ++ W  V    V+P P+LV+PL VE +KPRL LDAR+LNL MR  PF   G       VP +V      S C        V   V  +  +        +V  T+         IYHT+ SA   +F + G+PC +++DD     I     +   PP  ++      AA   L  VL V  + GY I + K +L PTT   +LG+   S+   F VP  K++    +  + +A   ++    L++  GKC S ++AVPAA L+   +   IG+   +G
Sbjct:   61 FSNHRSCKKFSDFVSKEILKRVKTGALRVWGRVG--FVDP-PYLVLPLTVEPTKPRLCLDARFLNLWMRDQPFTLDGL----VDVPRYVYKGSYMSKCDDKSGYDHVLLTVSSQTYVGFQWESCYLVCATLPFGWKISPYIYHTIGSAATTFFPSIGIPCSLYIDDRLTGEIMTGTGSWSVPPEARDKEYRYKAAMTALWCVLVVLAKLGYTIGISKSVLCPTTSLEYLGLIVDSVSQCFRVPSWKIEAWAFLRESILAHKESVHVKSLQRFQGKCISFSLAVPAAKLFIREISRGIGRVSSSG 357          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: UPI000A2A81EA (uncharacterized protein LOC110245159 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A81EA)

HSP 1 Score: 116 bits (291), Expect = 1.390e-26
Identity = 91/288 (31.60%), Postives = 134/288 (46.53%), Query Frame = 1
Query:   22 DNHVPKQFEPWVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGRGV-PGHVISRMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVYFTI---------IYHTLSSAVGAYFRARGMPCPVWLDDFYITNYR-RTKDDPPVEQELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQI 852
            +N   + FE +++  +++ + +  I  W  V     EP PHLVMPL VE SKPRL  D R+LNL  + +PF       + R V  GH  S M          + E SR + G       G     VY TI         +YH++  A  ++ RA G+PC  ++DD +I     RT           A+A +          GYFI + K  L P+    FLG    S +  F +P DK  K   +  A +++  ++   L++LAGK +S  +AVPAALLY   ++  I
Sbjct:   81 NNKSCRGFESFITSTVSERIRNGSISVWGKVG--ACEP-PHLVMPLTVEPSKPRLCHDERYLNLWTKDLPFRLDYISDLPRYVGKGHFQSTMDDKSGYDHIELSEESRTLFG---FEWEGWF--FVYNTIPFGWKASAYLYHSIGMAATSHIRALGVPCSQYIDDRHIGQLSTRTGSTLEFSDLELAEAAIFIAATTLVSLGYFIGLAKSSLSPSRTVKFLGFLVDSERQAFIIPEDKKIKFANLREAILSNRAVSVKTLQRLAGKISSFCIAVPAALLYAREIFRAI 360          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: UPI001CF174B4 (uncharacterized protein LOC114948837 n=4 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF174B4)

HSP 1 Score: 115 bits (287), Expect = 5.120e-25
Identity = 84/282 (29.79%), Postives = 137/282 (48.58%), Query Frame = 1
Query:   37 KQFEPWVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGRGV-PGHVISRMRFSPCSRGQSVL--EVSRFVLGRRVLRVHGVVLRMVY----FTIIYHTLSSAVGAYFRARGMPCPVWLDDFYITNYRRTKDDPPVE-QELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGK 858
            +QF  ++++ I   +++ V+  W  V + T    PHLV+PL VE SKPRL  D R+LNL ++ +PF       + R V PGH   +  F   +  Q VL    SR   G +   V+ V   + +       IYH L  AV +  R+ G+P   ++DD ++    R      +    + A A  + + ++  +AGYF+++ K    P+    FLG  C S +  F +PPDK  K   +    ++S  +    L++ AGK  S ++A+P   LYT   +  I +
Sbjct:   91 EQFRDFITDTIVNWVDTGVLAVWGRVGEGT---SPHLVLPLTVEPSKPRLCHDERFLNLWIKDLPFKLDHLTDLPRYVLPGHF--QTSFDDKNGYQHVLLHPSSRTFFGLQWNGVYFVFCTLPFGWKASAYIYHNLGLAVTSAARSFGVPVSQYIDDRHVGQLCRAPASSTLSPNRVLAVAAAYILCYLLAEAGYFVAIAKSQCVPSIVIRFLGFLCDSGRQAFLLPPDKKLKFSILREEILSSRCVGIKTLQRFAGKVVSFSLAIPGCKLYTRETFKAISR 367          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: A0A8J9VMZ7_BRALA (Hypp551 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VMZ7_BRALA)

HSP 1 Score: 111 bits (277), Expect = 1.230e-23
Identity = 87/289 (30.10%), Postives = 132/289 (45.67%), Query Frame = 1
Query:   52 WVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGR-----GVPGHVISRMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVY----FTIIYHTLSSAVGAYFRARGMPCPVWLDDFYITNYRRTKDDPPVEQELAAQAVL--HFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRTGPSRV 885
            ++  +I   LE   I+ W  V     +P PHLV+PL VE SKPR+  D R+LN   +  PF         R     G   H + +  +S       + E SR   G +   +  V   + +       I++T  S + +Y R  G+P  +++DD        T   P V  +   QA +  + +  +  +AGYF+S+ KCI+ PT   V LG   +S +  F  P DK  K   +  A + +  IT   L+K  GKC SMT+ VP A +YT      +G+  + G  RV
Sbjct:  293 FIEAEIKGRLEDGSIKVWGKVGHC--DP-PHLVLPLTVEPSKPRMCWDGRYLNNWTKDCPFKLDSVSEAPRMLRKGGYMTHTVEKSGYSHIY----LTEDSRTFFGFKFKDLFFVHCSLPFGWSASAYIFNTTGSVISSYARHLGVPTMLYIDDRLNGEATITWQRPEVNPDPYTQAQIASYVMCELLTRAGYFLSLNKCIIVPTQILVHLGAGLNSREGVFFFPEDKRRKFSTLREAILNAPMITLNALQKFVGKCVSMTLMVPGARIYTRRCNKLMGEMTQKGQLRV 574          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: UPI0016045BCF (uncharacterized protein LOC118418123 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016045BCF)

HSP 1 Score: 104 bits (260), Expect = 1.940e-21
Identity = 82/288 (28.47%), Postives = 131/288 (45.49%), Query Frame = 1
Query:   52 WVSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGRGVP-GHVISRMRFSPCSRGQSVLEVSRFVLGRR----VLRVHGVVLRMVYFTIIYHTLSSAVGAYFRARGMPCPVWLDDFYITNYR---RTKDDPPVEQELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRT-GPSRVS 888
            ++++++   L    I+ W  V +   EP PHL+MP+ VE SKPRL  D R+LN  ++  PF       + R VP G  ++ +          V E S+ +LG +    +     +         +Y        +Y R+ G+P   ++DD          R K D     + AA A +  +  +  + GYF+ + K IL PT   + LG  C+SL   F +P DK  +   +    +A  T+T   ++K AGKC S  + VPAA L+    +  I +  R  G  R+S
Sbjct:  133 FITKELRARLAKGAIRLWGKVGEC--EP-PHLIMPITVEPSKPRLCCDQRFLNCWIKDTPFTLETLRDVPRMVPQGSFLTSVDDKSGYDHLLVTEDSQTLLGFQWGGYIFVCCSIPFGFRTSAFLYQATGMVATSYVRSLGVPTSQYIDDRLAAELLARLRNKSDRDSHLD-AANAAIFILCQILIRLGYFLGLGKSILIPTQIIIHLGYGCNSLLRAFFLPVDKKSRFIELREYILAQETVTIKTMQKWAGKCVSFQLVVPAAKLFARVAHRAIAEALRAQGTIRIS 416          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: UPI00109BF133 (uncharacterized protein LOC110236609 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BF133)

HSP 1 Score: 103 bits (257), Expect = 5.270e-21
Identity = 80/292 (27.40%), Postives = 130/292 (44.52%), Query Frame = 1
Query:   55 VSEQIAKLLESSVIQKWSSVADTTVEPKPHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGRGV-PGHVISRMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVYFTI---------IYHTLSSAVGAYFRARGMPCPVWLDDFYITNYRRTKD--DPPVEQ------ELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTIT-FAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRTG 873
            +++ + + ++S   + W  V        P +V+PL VE +KPRL +DAR+LNL MR  P        + + V PG  +S++          + E S+   G     +      +V  T+         +Y ++  +V  + R RG+ C +++DD  I      K      +EQ      + +A A L+    V    GYF+ +KKC L+PT +  FLGM   +    F +P DK  K + +    +     T    L+K  GKC   ++A P A  +T  M A +    RTG
Sbjct:  205 ITKMLTERIKSGAFRIWGKVGKCR---PPKVVLPLTVEPTKPRLCIDARFLNLWMRDTPCRLDNLATVPQFVYPGSYVSKIDDKSAYDHVFLTEASQKYFG-----IEWKGWWLVSTTLPAGWKNAQFVYQSIGGSVSTFLRERGIACSLYIDDRLIGEMFSEKGHWSGSIEQRECKLSQESAVAALYVTCKVVVSLGYFLGLKKCKLEPTKKITFLGMNIDTQSQAFLIPEDKRQKFKNLREEILQHENSTSLQSLKKFKGKCIYFSLAFPGAKYHTRQMTASVENADRTG 488          
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Match: A0A8J1TME1_OWEFU (Ofus.G05325 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TME1_OWEFU)

HSP 1 Score: 102 bits (254), Expect = 1.070e-20
Identity = 78/256 (30.47%), Postives = 115/256 (44.92%), Query Frame = 1
Query:  139 PHLVMPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGRGVPGHVISRMRFSPCSRGQSVLEVSRFVLGRRVLRVHGVVLR---MVYFTI---------IYHTLSSAVGAYFRARGMPCPVWLDD-FYITNYRRTKDDPPVEQELAAQAVLHFVLWVFYQAGYFISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASSTITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQR 867
            PH+VMPL VE SKPRL  D R++NL MR +PF         R VP  V S      C        V   +L        G+V     MVY TI         +Y +L   V +Y R+  +    ++DD  ++ N  R   +   E E   +  ++ VL +    GY ++++KC   PTT   +LG    S    F +P DK +K    +S  ++   +   +L++  GKC SM + VP A +YT      + K  R
Sbjct:   58 PHVVMPLLVEPSKPRLCHDDRYINLWMRDMPFTLETL----REVPRMVNSGAVLFSCDDKSGYDHV---LLSESSQMYFGIVFGEWVMVYRTIPFGWKLSPYVYQSLGMVVTSYLRSLQICTMQYIDDRLFVVN--RKPSEVEEEFEFRQRCTIYAVLKILSDLGYTLAIRKCNFQPTTCLRYLGFLIDSESMCFHLPTDKKEKFLEFMSYILSKEKVDIKVLQRWVGKCISMILVVPGAKMYTKVANNSLSKAMR 304          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLE3_9PHAE1.870e-7345.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIS8_9PHAE8.660e-4435.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRN9_9PHAE1.820e-4033.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001CF36FDE1.540e-2731.58uncharacterized protein LOC114956330 n=1 Tax=Acrop... [more]
UPI000A2A81EA1.390e-2631.60uncharacterized protein LOC110245159 n=1 Tax=Exaip... [more]
UPI001CF174B45.120e-2529.79uncharacterized protein LOC114948837 n=4 Tax=Acrop... [more]
A0A8J9VMZ7_BRALA1.230e-2330.10Hypp551 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
UPI0016045BCF1.940e-2128.47uncharacterized protein LOC118418123 n=1 Tax=Branc... [more]
UPI00109BF1335.270e-2127.40uncharacterized protein LOC110236609 n=1 Tax=Exaip... [more]
A0A8J1TME1_OWEFU1.070e-2030.47Ofus.G05325 protein n=1 Tax=Owenia fusiformis TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:531820..532707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size888
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.986993-CDS-C-linearis_contig93:531819..5327071622930799.986993-CDS-C-linearis_contig93:531819..532707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 531820..532707 +
1690881256.4607356-CDS-C-linearis_contig93:531819..5327071690881256.4607356-CDS-C-linearis_contig93:531819..532707Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 531820..532707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16923.1prot_C-linearis_contig93.16923.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 531820..532707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16923.1

>prot_C-linearis_contig93.16923.1 ID=prot_C-linearis_contig93.16923.1|Name=mRNA_C-linearis_contig93.16923.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=296bp
DLTAAEFDNHVPKQFEPWVSEQIAKLLESSVIQKWSSVADTTVEPKPHLV
MPLGVEESKPRLFLDARWLNLMMRRIPFGQGGAGCMGRGVPGHVISRMRF
SPCSRGQSVLEVSRFVLGRRVLRVHGVVLRMVYFTIIYHTLSSAVGAYFR
ARGMPCPVWLDDFYITNYRRTKDDPPVEQELAAQAVLHFVLWVFYQAGYF
ISVKKCILDPTTRFVFLGMTCHSLQCRFEVPPDKVDKLEAIISAAIASST
ITFAMLEKLAGKCTSMTVAVPAALLYTHYMYAQIGKFQRTGPSRVS
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mRNA from alignment at C-linearis_contig93:531820..532707+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16923.1 ID=mRNA_C-linearis_contig93.16923.1|Name=mRNA_C-linearis_contig93.16923.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=888bp|location=Sequence derived from alignment at C-linearis_contig93:531820..532707+ (Chordaria linearis ClinC8C monoicous)
GATCTGACGGCCGCCGAATTCGATAACCACGTCCCGAAACAGTTTGAGCC ATGGGTGAGCGAACAAATCGCCAAACTCCTAGAGTCTTCGGTCATCCAAA AATGGTCGTCCGTAGCAGACACTACGGTAGAACCCAAGCCACATTTGGTC ATGCCGCTGGGGGTAGAAGAGTCCAAACCAAGGCTTTTCTTAGACGCACG ATGGCTCAATCTCATGATGCGGCGCATCCCTTTCGGGCAAGGTGGCGCAG GTTGCATGGGAAGGGGCGTTCCAGGCCACGTTATATCACGCATGAGGTTT TCACCATGTTCCCGTGGACAGAGCGTCTTGGAAGTATCTCGGTTTGTTTT GGGAAGGCGAGTATTACGTGTTCACGGTGTTGTGCTACGGATGGTGTATT TCACCATCATCTACCACACACTCTCGTCCGCAGTAGGCGCATATTTTCGC GCTAGGGGCATGCCATGCCCCGTTTGGTTAGATGATTTTTACATCACCAA TTACCGCCGTACAAAGGATGACCCACCGGTCGAGCAAGAGCTAGCAGCGC AGGCAGTCCTGCACTTCGTGTTGTGGGTGTTTTACCAAGCGGGGTACTTC ATATCCGTGAAGAAGTGCATTCTGGATCCCACAACTCGCTTTGTATTTCT AGGGATGACCTGCCACTCGCTGCAGTGCCGATTCGAAGTACCACCGGACA AGGTTGATAAACTAGAAGCGATCATTTCCGCGGCCATTGCAAGTAGCACG ATCACTTTCGCCATGCTCGAGAAGCTGGCAGGCAAGTGCACAAGCATGAC GGTGGCAGTCCCCGCAGCCCTTCTTTACACTCATTACATGTACGCACAGA TCGGCAAGTTCCAGCGTACGGGTCCCAGCAGAGTCTCG
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Coding sequence (CDS) from alignment at C-linearis_contig93:531820..532707+

>mRNA_C-linearis_contig93.16923.1 ID=mRNA_C-linearis_contig93.16923.1|Name=mRNA_C-linearis_contig93.16923.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1776bp|location=Sequence derived from alignment at C-linearis_contig93:531820..532707+ (Chordaria linearis ClinC8C monoicous)
GATCTGACGGCCGCCGAATTCGATAACCACGTCCCGAAACAGTTTGAGCC
ATGGGTGAGCGAACAAATCGCCAAACTCCTAGAGTCTTCGGTCATCCAAA
AATGGTCGTCCGTAGCAGACACTACGGTAGAACCCAAGCCACATTTGGTC
ATGCCGCTGGGGGTAGAAGAGTCCAAACCAAGGCTTTTCTTAGACGCACG
ATGGCTCAATCTCATGATGCGGCGCATCCCTTTCGGGCAAGGTGGCGCAG
GTTGCATGGGAAGGGGCGTTCCAGGCCACGTTATATCACGCATGAGGTTT
TCACCATGTTCCCGTGGACAGAGCGTCTTGGAAGTATCTCGGTTTGTTTT
GGGAAGGCGAGTATTACGTGTTCACGGTGTTGTGCTACGGATGGTGTATT
TCACCATCATCTACCACACACTCTCGTCCGCAGTAGGCGCATATTTTCGC
GCTAGGGGCATGCCATGCCCCGTTTGGTTAGATGATTTTTACATCACCAA
TTACCGCCGTACAAAGGATGACCCACCGGTCGAGCAAGAGCTAGCAGCGC
AGGCAGTCCTGCACTTCGTGTTGTGGGTGTTTTACCAAGCGGGGTACTTC
ATATCCGTGAAGAAGTGCATTCTGGATCCCACAACTCGCTTTGTATTTCT
AGGGATGACCTGCCACTCGCTGCAGTGCCGATTCGAAGTACCACCGGACA
AGGTTGATAAACTAGAAGCGATCATTTCCGCGGCCATTGCAAGTAGCACG
ATCACTTTCGCCATGCTCGAGAAGCTGGCAGGCAAGTGCACAAGCATGAC
GGTGGCAGTCCCCGCAGCCCTTCTTTACACTCATTACATGTACGCACAGA
TCGGCAAGTTCCAGCGTACGGGTCCCAGCAGAGTCTCGGATCTGACGGCC
GCCGAATTCGATAACCACGTCCCGAAACAGTTTGAGCCATGGGTGAGCGA
ACAAATCGCCAAACTCCTAGAGTCTTCGGTCATCCAAAAATGGTCGTCCG
TAGCAGACACTACGGTAGAACCCAAGCCACATTTGGTCATGCCGCTGGGG
GTAGAAGAGTCCAAACCAAGGCTTTTCTTAGACGCACGATGGCTCAATCT
CATGATGCGGCGCATCCCTTTCGGGCAAGGTGGCGCAGGTTGCATGGGAA
GGGGCGTTCCAGGCCACGTTATATCACGCATGAGGTTTTCACCATGTTCC
CGTGGACAGAGCGTCTTGGAAGTATCTCGGTTTGTTTTGGGAAGGCGAGT
ATTACGTGTTCACGGTGTTGTGCTACGGATGGTGTATTTCACCATCATCT
ACCACACACTCTCGTCCGCAGTAGGCGCATATTTTCGCGCTAGGGGCATG
CCATGCCCCGTTTGGTTAGATGATTTTTACATCACCAATTACCGCCGTAC
AAAGGATGACCCACCGGTCGAGCAAGAGCTAGCAGCGCAGGCAGTCCTGC
ACTTCGTGTTGTGGGTGTTTTACCAAGCGGGGTACTTCATATCCGTGAAG
AAGTGCATTCTGGATCCCACAACTCGCTTTGTATTTCTAGGGATGACCTG
CCACTCGCTGCAGTGCCGATTCGAAGTACCACCGGACAAGGTTGATAAAC
TAGAAGCGATCATTTCCGCGGCCATTGCAAGTAGCACGATCACTTTCGCC
ATGCTCGAGAAGCTGGCAGGCAAGTGCACAAGCATGACGGTGGCAGTCCC
CGCAGCCCTTCTTTACACTCATTACATGTACGCACAGATCGGCAAGTTCC
AGCGTACGGGTCCCAGCAGAGTCTCG
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