mRNA_C-linearis_contig93.16918.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16918.1
Unique NamemRNA_C-linearis_contig93.16918.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.440e-28
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219
            DH+ RVLAVT GFTG+TNDKTIIR+D AVT+IRTDP YT++ YKLY +DG  FE KGCYLLVDNGYHK R+ +
Sbjct:  192 DHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLI 264          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.500e-28
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219
            DH+ RVLAVT GFTG+TNDKTIIR+D AVT+IRTDP YT++ YKLY +DG  FE KGCYLLVDNGYHK R+ +
Sbjct:  283 DHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLI 355          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.710e-28
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHK 204
            DHTKRVLAVTPGFTGSTNDK+IIR+D AVTKIR DP Y+++ + +Y  DG  +++KGCYLLVDNGYHK
Sbjct:   26 DHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 93          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.540e-26
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHK 204
            DHTKRVLAVTPGFTGSTNDK+IIR+D AVTKIR DP Y+++ + +Y  DG  +++KGCYLLVDNGYHK
Sbjct:  267 DHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 334          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA4_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.110e-23
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVR 210
            DH  R +AVT GFTGSTNDKTI+ +D AV KIRTD  YT++T+ +Y  DG +  +KGCYLLV NGYHKV 
Sbjct:   70 DHAGRAIAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVVNGYHKVH 139          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.510e-23
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRS 213
            DH  R +A+T GFTG+TNDKTIIR+D  V  I+ D  YT RTYKL R DG   E KGCYL+VDNGYH+V S
Sbjct:   50 DHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNS 120          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5KTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA5_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.760e-22
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRS 213
            +H  R +A+T GFTG TN KTIIR+D  V  ++TD  YT RTYKL R DG   E KGCYL+VDNGYH+V S
Sbjct:   66 NHAGRAIAITSGFTGETNHKTIIRYDAGVHTVKTDAQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNS 136          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5J5B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5B7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.900e-22
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRS 213
            +H  R +AVT GFTGSTNDKTI+ +D AV KIRTD  YT++ + +Y  DG +  +KGCYLLVDNGYHKV S
Sbjct:   86 NHAGRAIAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKAFDVYNEDGTTTTLKGCYLLVDNGYHKVFS 156          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-21
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219
            DH  R +AVT GFTGSTNDKT + +D AV KIRTD  YT++T+ +Y +DG +  +KGCY+LVDNGYHK +  +
Sbjct:   69 DHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILI 141          
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.290e-21
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219
            DH  R +AVT GFTGSTNDKTI+ +D AV KIRTD  YT++T+ LY  DG +  +KGCY L DNGYHK +  +
Sbjct:  114 DHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE1.440e-2872.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE3.500e-2872.60Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE4.710e-2872.06DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE1.540e-2672.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCA4_9PHAE2.110e-2362.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG32_9PHAE3.510e-2363.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTA5_9PHAE3.760e-2260.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5B7_9PHAE9.900e-2261.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI1.060e-2157.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUX7_9PHAE1.290e-2158.90DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:343737..343958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.9e-17
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size224
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.684167-CDS-C-linearis_contig93:343736..3439581622930799.684167-CDS-C-linearis_contig93:343736..343958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 343737..343958 +
1690881256.3590763-CDS-C-linearis_contig93:343736..3439581690881256.3590763-CDS-C-linearis_contig93:343736..343958Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 343737..343958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16918.1prot_C-linearis_contig93.16918.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 343737..343958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16918.1

>prot_C-linearis_contig93.16918.1 ID=prot_C-linearis_contig93.16918.1|Name=mRNA_C-linearis_contig93.16918.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=74bp
DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDG
ISFEVKGCYLLVDNGYHKVRSFV*
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mRNA from alignment at C-linearis_contig93:343737..343958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16918.1 ID=mRNA_C-linearis_contig93.16918.1|Name=mRNA_C-linearis_contig93.16918.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at C-linearis_contig93:343737..343958+ (Chordaria linearis ClinC8C monoicous)
GACCACACAAAACGCGTGCTAGCGGTGACACCGGGCTTCACGGGGTCAAC GAATGACAAGACGATCATCCGGTTCGACGGCGCCGTGACCAAGATTCGGA CGGACCCTACATACACGGATCGCACGTACAAGCTCTACCGACGCGATGGG ATATCGTTCGAGGTGAAGGGATGCTACCTGCTCGTGGACAACGGGTACCA CAAGGTAAGATCGTTCGTATGA
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Coding sequence (CDS) from alignment at C-linearis_contig93:343737..343958+

>mRNA_C-linearis_contig93.16918.1 ID=mRNA_C-linearis_contig93.16918.1|Name=mRNA_C-linearis_contig93.16918.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at C-linearis_contig93:343737..343958+ (Chordaria linearis ClinC8C monoicous)
GACCACACAAAACGCGTGCTAGCGGTGACACCGGGCTTCACGGGGTCAAC
GAATGACAAGACGATCATCCGGTTCGACGGCGCCGTGACCAAGATTCGGA
CGGACCCTACATACACGGATCGCACGTACAAGCTCTACCGACGCGATGGG
ATATCGTTCGAGGTGAAGGGATGCTACCTGCTCGTGGACAACGGGTACCA
CAAGGTAAGATCGTTCGTATGAGACCACACAAAACGCGTGCTAGCGGTGA
CACCGGGCTTCACGGGGTCAACGAATGACAAGACGATCATCCGGTTCGAC
GGCGCCGTGACCAAGATTCGGACGGACCCTACATACACGGATCGCACGTA
CAAGCTCTACCGACGCGATGGGATATCGTTCGAGGTGAAGGGATGCTACC
TGCTCGTGGACAACGGGTACCACAAGGTAAGATCGTTCGTATGA
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