mRNA_C-linearis_contig93.16918.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.440e-28 Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219 DH+ RVLAVT GFTG+TNDKTIIR+D AVT+IRTDP YT++ YKLY +DG FE KGCYLLVDNGYHK R+ + Sbjct: 192 DHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLI 264
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 114 bits (285), Expect = 3.500e-28 Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219 DH+ RVLAVT GFTG+TNDKTIIR+D AVT+IRTDP YT++ YKLY +DG FE KGCYLLVDNGYHK R+ + Sbjct: 283 DHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLI 355
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.710e-28 Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHK 204 DHTKRVLAVTPGFTGSTNDK+IIR+D AVTKIR DP Y+++ + +Y DG +++KGCYLLVDNGYHK Sbjct: 26 DHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 93
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.540e-26 Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHK 204 DHTKRVLAVTPGFTGSTNDK+IIR+D AVTKIR DP Y+++ + +Y DG +++KGCYLLVDNGYHK Sbjct: 267 DHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 334
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA4_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.110e-23 Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVR 210 DH R +AVT GFTGSTNDKTI+ +D AV KIRTD YT++T+ +Y DG + +KGCYLLV NGYHKV Sbjct: 70 DHAGRAIAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVVNGYHKVH 139
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 3.510e-23 Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRS 213 DH R +A+T GFTG+TNDKTIIR+D V I+ D YT RTYKL R DG E KGCYL+VDNGYH+V S Sbjct: 50 DHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNS 120
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5KTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA5_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 3.760e-22 Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRS 213 +H R +A+T GFTG TN KTIIR+D V ++TD YT RTYKL R DG E KGCYL+VDNGYH+V S Sbjct: 66 NHAGRAIAITSGFTGETNHKTIIRYDAGVHTVKTDAQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNS 136
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5J5B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5B7_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 9.900e-22 Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRS 213 +H R +AVT GFTGSTNDKTI+ +D AV KIRTD YT++ + +Y DG + +KGCYLLVDNGYHKV S Sbjct: 86 NHAGRAIAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKAFDVYNEDGTTTTLKGCYLLVDNGYHKVFS 156
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 1.060e-21 Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219 DH R +AVT GFTGSTNDKT + +D AV KIRTD YT++T+ +Y +DG + +KGCY+LVDNGYHK + + Sbjct: 69 DHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILI 141
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.290e-21 Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1 Query: 1 DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGISFEVKGCYLLVDNGYHKVRSFV 219 DH R +AVT GFTGSTNDKTI+ +D AV KIRTD YT++T+ LY DG + +KGCY L DNGYHK + + Sbjct: 114 DHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILI 186 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16918.1 >prot_C-linearis_contig93.16918.1 ID=prot_C-linearis_contig93.16918.1|Name=mRNA_C-linearis_contig93.16918.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=74bp DHTKRVLAVTPGFTGSTNDKTIIRFDGAVTKIRTDPTYTDRTYKLYRRDGback to top mRNA from alignment at C-linearis_contig93:343737..343958+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16918.1 ID=mRNA_C-linearis_contig93.16918.1|Name=mRNA_C-linearis_contig93.16918.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=222bp|location=Sequence derived from alignment at C-linearis_contig93:343737..343958+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:343737..343958+ >mRNA_C-linearis_contig93.16918.1 ID=mRNA_C-linearis_contig93.16918.1|Name=mRNA_C-linearis_contig93.16918.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at C-linearis_contig93:343737..343958+ (Chordaria linearis ClinC8C monoicous)back to top |