mRNA_C-linearis_contig93.16917.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16917.1
Unique NamemRNA_C-linearis_contig93.16917.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.360e-24
Identity = 89/254 (35.04%), Postives = 128/254 (50.39%), Query Frame = 1
Query:    1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNT----FSLADDPGCTAIHVAASEGHDGAVIALF-RGGAHANEQDKNQQTPLYMAA-RGGHLSVVENLVEADANPNARSVEGDSK-----SALDHAASLGHVLMIKPPVDGGADVNAHHR-GRSALHFAGLNDRPGAIAALIEAGGETELKMLSD 726
            G TPLM AA+ GH PV+ TLL   A    R  +   T +  A  GG++ I +ALL  GA KDS  A G+TPL+  +  GHLP V+ LL   A ++L         + L D+  CTA+H A + GH G V AL  +GG   +  D +  T L++A   G  L ++E L+ A A+P+ R   G  +     +A     ++G   + K  +D GADVN+    G + LH A    +  A+  L+   G  E  +  D
Sbjct:   86 GYTPLMKAAENGHMPVMETLLDQGADATFRHLDDGSTSIIAAALGGYNEIVIALLNKGADKDSPAANGRTPLMEASRKGHLPVVKTLLNADADVTLAAHGLTDEDYCLGDN--CTALHFATAGGHLGVVNALLSKGGLEIDAVDTDGTTALHLAVIMGRSLPIMETLLVAGADPDIRINTGGVQDCPLETACHSKDNIGTYHVCKTLIDHGADVNSRCPFGSTPLHHACDYSQSDAVLRLLLQAGADENALNDD 337          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A7R8ZMZ3_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZMZ3_9CRUS)

HSP 1 Score: 85.9 bits (211), Expect = 8.560e-15
Identity = 87/297 (29.29%), Postives = 134/297 (45.12%), Query Frame = 1
Query:    7 TPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIA--LFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNAHHR-GRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPL 888
            TPL  A   G   VV  LLA +A     ++   ++ LH+  +      A  L+  GA  + +D FG+TPL     + H   +E LL  GA  ++         D    + +H+  S     A IA  L    A  N +D+N +TPL++AA      V+E L+   A+PN  ++       +  +A   H+L+ K     GADVNA    G++ L  A   DR   +  L+  G +  +   +++Y                TPL  A S    +  E+L+Q GA VNA+DD+G +PL
Sbjct:  414 TPLFQAIFNGAHSVVEVLLAHEADPNIIDS-LGRSSLHWTASAE---TAELLIMKGAAVNPKDKFGETPLFVATQNDHHSIIEVLLAHGADPNIT--------DSSETSPLHIVKS-----AEIAQLLIEKNADVNARDRNNETPLFIAAIKNRHPVIEALLAGGADPNIANIYKGYPLHMAKSAETAHLLIEK-----GADVNAKAEVGKTPLFIATDRDRHSVVEVLLAHGADPNI---ANKYQR--------------TPLHEAKSA---ETAELLMQKGADVNAKDDDGGTPL 668          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: M2UFG2_COCH5 (Uncharacterized protein (Fragment) n=2 Tax=Cochliobolus heterostrophus TaxID=5016 RepID=M2UFG2_COCH5)

HSP 1 Score: 81.6 bits (200), Expect = 7.820e-14
Identity = 77/252 (30.56%), Postives = 121/252 (48.02%), Query Frame = 1
Query:    7 TPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLH----FAVTGGHDGIAMA--LLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVA----ASEGHDGAVIA--LFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASL-------GHVLMIKPPVDGGADVNAH-HRGRSALHFAGLNDRPGAIAALIEAGGE 702
            TPL  A++ GH  +V  LL  + A   ++ +   TVLH    F  +  +D IA+   LL   A  D++D   +TPL   +  GHL  VEALL  GA ++ +C          G T +H A    +S  +D   +   L    A  + +D   +TPLY A+ GGHL +VE L+E  A  N +  +G     + HAA          ++ ++K  +   AD++A  ++ R+ L+FA        + AL+E G +
Sbjct:  108 TPLYFASEGGHLQLVEALLE-EGAEVNKQCKKGMTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDDEWRTPLYFASEGGHLQLVEALLEEGAEVNKQCKK--------GMTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDDEWRTPLYFASEGGHLQLVEALLEEGAEVNKQCKKG---MTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDYQMRTPLYFASEGGHLQLVEALLEEGAD 347          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: UPI001EAFE071 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFE071)

HSP 1 Score: 80.1 bits (196), Expect = 7.540e-13
Identity = 80/328 (24.39%), Postives = 142/328 (43.29%), Query Frame = 1
Query:    1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALL-RAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLS---------LECV---------------NTFSLA--DDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNA-HHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPLHLVC 900
            GETP+M+AA+ GH  V   L+    ++   + +  + +LH A  GG+  I   ++ +      S+D  G+TP++  A +GH    + L+  G SL+         L C                ++  LA  D  G T I VAA  GH      L   G      D + +  L+ A  GG++ +V++++  D + +  S + + ++ +  AA  GH  +    V+ G  +      GR+ LH A +             GG  ++     +  +++SV  A   +   TP++ AA        ++L+  G ++   DD+G + LH  C
Sbjct:  791 GETPIMVAAENGHKNVFDLLVNKRCSLTTVD-DSGRNILHCACVGGNVHIVKYIISQDSVDLASKDKEGETPIVLAAENGHKNVFDVLVNKGCSLTAVDDSDRNILHCACVGGNVQIVEYIISQDSVDLASKDKEGETPIMVAAENGHKNVFDLLVNKGCSLTTVDDSGRNILHCACVGGNVQIVKDIISQD-SVDLASKDKEGETPIMVAAENGHKNVFDVLVNKGCSLTTVDDSGRNILHCACV-------------GGNVQIVK---DIISQDSVDLASKDKEAETPIMVAAENGHKNVFDLLVNKGCSLTTVDDSGRNILHCAC 1100          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: UPI00201FA5C7 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201FA5C7)

HSP 1 Score: 78.6 bits (192), Expect = 2.360e-12
Identity = 81/326 (24.85%), Postives = 136/326 (41.72%), Query Frame = 1
Query:    1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAG-AGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAV-IALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPV--DGGADVNAHHR-GRSALHFAGLNDRPGAIAALIE--------------------AGGETELKMLSDEYAAEE-SVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPLHLVC 900
            G+TP+M+AA+ GH  V   L+    ++   +    + +LH A  GG+  I   ++  G      +D  GQTP++  A +GH    + L+    SL+          DD G   +H A   G+   V   + +G      +DK  QTP+ +AA  GH +V + LV+   N    +   DS   + H A +G  + I   +   G  D+ +  + G++ +  A  N        L++                     GG  ++     EY   + SV      R G TP++ AA        ++L+  G ++   DD+G + LH  C
Sbjct:  398 GQTPIMVAAKNGHKNVFDLLVDKGCSLTTVDKSG-RNILHCACVGGNVQIVEYIISHGPVDLTRKDGEGQTPIMLAAENGHKNVFDLLVDKRCSLTT--------VDDSGGNILHCACVGGNVQIVEYIISQGSVDLTSKDKEGQTPIMLAAENGHKNVFDLLVKKRCN---LTTVDDSGGNILHCACVGGNVQIIEYIISQGSVDLTSKDKEGQTPIMLAAENGHKNVFDLLVDKRCSLTTVDDSGGNILHCACVGGNVQIV----EYIISQGSVDLTSTDREGQTPIMVAAENGYKNVFDLLVNKGCSLTTVDDSGRNILHCAC 707          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A2K3CTM6_CHLRE (HET domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CTM6_CHLRE)

HSP 1 Score: 78.6 bits (192), Expect = 2.580e-12
Identity = 87/290 (30.00%), Postives = 122/290 (42.07%), Query Frame = 1
Query:  115 LHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNAHHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASG------ARGKAMEVLLQHGAAVNA--QDDNGHSPLHLVCAASRRADAEEAVAILAAVGS 960
            LH AV  G     + LL  GA  ++ DA   TPL+     GH+  V  LL  GA++ +       L+++   TA+HVAA+ G    V AL   GA+   +D    TPL +AAR GHL VVE L+      +  + +    + L H+A                    H    +AL  AG N     +AA   AG   E    + E      + A   +      LL+  S       A   A++ LL +  AVNA  QD+ GH  +HL           EA+A L  VG+
Sbjct:  575 LHAAVEAGRTAEVLELLAEGAFIEALDANASTPLLMAVCAGHVEVVHVLLEAGAAVQV------CLSEEERNTALHVAAARGDPAVVQALLAAGANIGARDAAGCTPLSVAAREGHLPVVELLLATSGGKDVDAKDNAGNTPLHHSA-------------------IHEDVAAALQAAGAN-----VAARNLAGQTAEDTRRALETRKAAGMPARPPQSDAERTLLAECSKPPQHRRAVAAAVKRLLVNDMAVNANAQDEEGHCAVHLAAGNGHT----EALAALLMVGA 830          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: G1M2H5_AILME (BCL3 transcription coactivator n=13 Tax=Laurasiatheria TaxID=314145 RepID=G1M2H5_AILME)

HSP 1 Score: 77.4 bits (189), Expect = 3.650e-12
Identity = 66/200 (33.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:  313 ADDPGCTAIHVAASEGHDGAV---IALFR-GGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKS--ALDHAASLGHVLMIKPPVDGGADVNA-HHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPLH 891
            AD+ G T +H+A  +G+ GAV   ++LF+ GG   +  +  +QTPL++A      SVV  LV A A+P A    G + +  A +H +      ++     G  D+ A ++ G +ALH A   + P A+  L+E G + +                AVD +SG +PL+ A        +++LLQHGA VNAQ  +G S LH
Sbjct:  128 ADEDGDTPLHIAVVQGNLGAVHRLVSLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVMAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTVDLEARNYDGLTALHVAVNMECPEAVLLLLERGADID----------------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 311          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A6H5HWJ0_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HWJ0_9HYME)

HSP 1 Score: 77.4 bits (189), Expect = 4.680e-12
Identity = 95/354 (26.84%), Postives = 151/354 (42.66%), Query Frame = 1
Query:    1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHD-GIAMALLR------AGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALF-------RGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEG---------------------------------DSK-----SALDHAASLGHVLMIKPPVDGGADVNA-HHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAM-EVLLQHGAAVNAQDDNGHSPLHLVC 900
            G TPL +AA  G+  +V  LL   A   +   E   T LH   T   D G+     +           D++D FG TPL   A  G L  VE LL   A  +          ++ G T +HV      D  ++  F             + +D+   TPL++AA GG+L +VE L++  A+PN+ + EG                                 D+K     + L  AA+ G++++++  +   AD N+ +  G + LH     +  G +A         +  M++D+   ++  I A D++ G++PL  A S  R + + EVLL  GA  N  ++ G +PLHLVC
Sbjct:  197 GNTPLHLAAAGGYLILVELLLKRQADPNSTNEEGL-TPLHVICTRNKDDGLLKEFFKIVDEIPTSVQVDAKDRFGNTPLHLAAAGGKLKLVELLLKRQADPNST--------NEEGLTPLHVICKRDKDDGLLKEFFKIVDEIPTSVQVDAKDRFGNTPLHLAAAGGYLILVELLLKRQADPNSTNEEGLTPLHVICTRNKDDGLLKEFFKIVDEIPTSVQVDAKDRFGNTPLHLAAAGGYLILVELLLKRQADPNSTNEEGLTPLHVICKREVDGGLAR--------QFFMVADDMK-KQVRINAQDKK-GNSPLHFALSRCRNRGLVEVLLHRGADPNLANEEGQTPLHLVC 531          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A4Q4P0E4_9PLEO (NACHT domain-containing protein n=1 Tax=Alternaria tenuissima TaxID=119927 RepID=A0A4Q4P0E4_9PLEO)

HSP 1 Score: 77.4 bits (189), Expect = 5.600e-12
Identity = 63/212 (29.72%), Postives = 92/212 (43.40%), Query Frame = 1
Query:   85 ARETEFFQTVLHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEG-DSKSALDHAASLGHVLMIKPPVDGGADVNAHHRG--RSALHFAGLNDRPGAIAALIEAGGETEL 711
            +   E + T LH A         +ALL+ G     +D +G+TPL+  A  G    VE LL  G+S+             PGCTA+H+AA  GH   V  L   GA  N Q     TP+  A   G   VV+ L++A A+    +    DS + +  A    ++ M++  +  G DVN        +AL  A        +  L+EAG +  L
Sbjct:  672 SENNEPWTTGLHLAAEFNLKNAIVALLQRGFDPGRRDLYGRTPLLVAAETGSKAAVEQLLKHGSSMEERTDERHH--HSPGCTALHIAAKNGHVAIVRLLLDRGAVINLQSLYHDTPISSAVELGQAEVVQVLLDAGADRTFHNTGSLDSTTLMSIAVLNENIKMVQFLIAAGVDVNERDESLHATALWDAACLQSVDCVRVLLEAGADPNL 881          
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 8.170e-12
Identity = 94/301 (31.23%), Postives = 132/301 (43.85%), Query Frame = 1
Query:    1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAGAG---------KDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQT-PLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNAHHRGRSALHFAGLNDRPG-AIAALIEAGGETELKMLSDEYAAEESVIAA----VDRRSGSTPLLSAASGARGKAMEV---LLQHGA 849
            G T LM AA +G+  +V  LL   A ++   T+   T LHFA+ G +  +  AL++AGA           +S+   GQTPL   AG G    + AL+  GA       N  S   D G TA+++AA  G+  AV  LF+    AN   +   T PL +A  GGHL VV+ LV+              +  +D  A  G +  ++      A    H    + L  AG+ D  G A+   IE   E  LK+L       E ++      +D  +   PLL A    RG A  +   LL HGA
Sbjct:   52 GVTALMCAANKGYLRIVRVLLRFGADVSV-STDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGA-------NVDSRMSD-GSTAMYIAACLGNLEAVEILFQ--KKANPLLRVGPTHPLDIATHGGHLGVVQELVQ--------------RFGIDGCADEGAIGALET-----AAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDN-ARENPLLCAFGTGRGHAPRITRFLLDHGA 321          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVI9_ECTSI1.360e-2435.04Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A7R8ZMZ3_9CRUS8.560e-1529.29Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
M2UFG2_COCH57.820e-1430.56Uncharacterized protein (Fragment) n=2 Tax=Cochlio... [more]
UPI001EAFE0717.540e-1324.39serine/threonine-protein phosphatase 6 regulatory ... [more]
UPI00201FA5C72.360e-1224.85serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A2K3CTM6_CHLRE2.580e-1230.00HET domain-containing protein n=1 Tax=Chlamydomona... [more]
G1M2H5_AILME3.650e-1233.00BCL3 transcription coactivator n=13 Tax=Laurasiath... [more]
A0A6H5HWJ0_9HYME4.680e-1226.84Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A4Q4P0E4_9PLEO5.600e-1229.72NACHT domain-containing protein n=1 Tax=Alternaria... [more]
A0A6H5KSL5_9PHAE8.170e-1231.23Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:333530..334492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue7e-21
Seed eggNOG ortholog2880.D7FVI9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size963
Cds size948
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.615102-CDS-C-linearis_contig93:333529..3344771622930799.615102-CDS-C-linearis_contig93:333529..334477Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 333530..334477 -
1690881256.3332124-CDS-C-linearis_contig93:333529..3344771690881256.3332124-CDS-C-linearis_contig93:333529..334477Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 333530..334477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930799.633068-UTR-C-linearis_contig93:334477..3344921622930799.633068-UTR-C-linearis_contig93:334477..334492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 334478..334492 -
1690881256.3496382-UTR-C-linearis_contig93:334477..3344921690881256.3496382-UTR-C-linearis_contig93:334477..334492Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 334478..334492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16917.1prot_C-linearis_contig93.16917.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 333530..334477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16917.1

>prot_C-linearis_contig93.16917.1 ID=prot_C-linearis_contig93.16917.1|Name=mRNA_C-linearis_contig93.16917.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=316bp
MIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALL
RAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLA
DDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQTPLYMAARGGHL
SVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNA
HHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVD
RRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPLHLVCAASRR
ADAEEAVAILAAVGS*
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mRNA from alignment at C-linearis_contig93:333530..334492-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16917.1 ID=mRNA_C-linearis_contig93.16917.1|Name=mRNA_C-linearis_contig93.16917.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=963bp|location=Sequence derived from alignment at C-linearis_contig93:333530..334492- (Chordaria linearis ClinC8C monoicous)
GGCGAAACACCGCTGATGATTGCAGCCCAAGAAGGCCATTTTCCCGTGGT GATGACTCTACTGGCCGTGGATGCCGCTATCGCCGCTCGCGAGACCGAGT TCTTCCAGACTGTTCTCCACTTTGCTGTCACCGGAGGGCACGATGGGATC GCGATGGCTCTCTTGCGCGCGGGGGCGGGCAAGGACTCACAAGACGCGTT TGGACAAACCCCGCTGATTACTTTAGCCGGTCATGGACACCTCCCTTTCG TGGAGGCTTTGTTAACCACCGGCGCTAGTTTGTCGCTCGAGTGCGTCAAC ACTTTTTCCCTTGCTGACGATCCTGGCTGTACTGCTATCCACGTTGCCGC CAGCGAAGGGCACGATGGGGCGGTGATTGCCCTATTCCGTGGAGGGGCAC ACGCTAACGAACAGGACAAGAATCAACAGACTCCGCTGTACATGGCAGCG CGTGGAGGCCATCTATCGGTCGTCGAGAATCTGGTGGAGGCCGACGCCAA CCCCAATGCCCGTAGTGTTGAAGGAGACTCCAAATCCGCGCTCGATCACG CGGCCTCGTTAGGGCACGTTCTCATGATCAAACCCCCTGTTGACGGCGGG GCCGACGTCAACGCCCATCATAGAGGCCGCTCGGCGCTCCACTTCGCGGG CTTAAACGACCGGCCTGGCGCCATCGCGGCGCTCATCGAGGCGGGGGGTG AAACCGAGCTGAAGATGCTATCGGACGAATACGCTGCCGAGGAATCGGTA ATCGCGGCGGTGGATAGGAGGAGTGGTTCCACTCCTCTCCTATCCGCCGC GAGTGGTGCGCGGGGGAAAGCAATGGAGGTTCTGCTGCAGCACGGCGCAG CGGTGAATGCGCAAGACGACAATGGACACTCGCCCCTGCACTTGGTTTGC GCGGCAAGCCGGCGGGCAGATGCAGAAGAGGCTGTGGCCATCCTTGCTGC GGTGGGGAGCTGA
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Coding sequence (CDS) from alignment at C-linearis_contig93:333530..334492-

>mRNA_C-linearis_contig93.16917.1 ID=mRNA_C-linearis_contig93.16917.1|Name=mRNA_C-linearis_contig93.16917.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at C-linearis_contig93:333530..334492- (Chordaria linearis ClinC8C monoicous)
ATGATTGCAGCCCAAGAAGGCCATTTTCCCGTGGTGATGACTCTACTGGC
CGTGGATGCCGCTATCGCCGCTCGCGAGACCGAGTTCTTCCAGACTGTTC
TCCACTTTGCTGTCACCGGAGGGCACGATGGGATCGCGATGGCTCTCTTG
CGCGCGGGGGCGGGCAAGGACTCACAAGACGCGTTTGGACAAACCCCGCT
GATTACTTTAGCCGGTCATGGACACCTCCCTTTCGTGGAGGCTTTGTTAA
CCACCGGCGCTAGTTTGTCGCTCGAGTGCGTCAACACTTTTTCCCTTGCT
GACGATCCTGGCTGTACTGCTATCCACGTTGCCGCCAGCGAAGGGCACGA
TGGGGCGGTGATTGCCCTATTCCGTGGAGGGGCACACGCTAACGAACAGG
ACAAGAATCAACAGACTCCGCTGTACATGGCAGCGCGTGGAGGCCATCTA
TCGGTCGTCGAGAATCTGGTGGAGGCCGACGCCAACCCCAATGCCCGTAG
TGTTGAAGGAGACTCCAAATCCGCGCTCGATCACGCGGCCTCGTTAGGGC
ACGTTCTCATGATCAAACCCCCTGTTGACGGCGGGGCCGACGTCAACGCC
CATCATAGAGGCCGCTCGGCGCTCCACTTCGCGGGCTTAAACGACCGGCC
TGGCGCCATCGCGGCGCTCATCGAGGCGGGGGGTGAAACCGAGCTGAAGA
TGCTATCGGACGAATACGCTGCCGAGGAATCGGTAATCGCGGCGGTGGAT
AGGAGGAGTGGTTCCACTCCTCTCCTATCCGCCGCGAGTGGTGCGCGGGG
GAAAGCAATGGAGGTTCTGCTGCAGCACGGCGCAGCGGTGAATGCGCAAG
ACGACAATGGACACTCGCCCCTGCACTTGGTTTGCGCGGCAAGCCGGCGG
GCAGATGCAGAAGAGGCTGTGGCCATCCTTGCTGCGGTGGGGAGCTGAAT
GATTGCAGCCCAAGAAGGCCATTTTCCCGTGGTGATGACTCTACTGGCCG
TGGATGCCGCTATCGCCGCTCGCGAGACCGAGTTCTTCCAGACTGTTCTC
CACTTTGCTGTCACCGGAGGGCACGATGGGATCGCGATGGCTCTCTTGCG
CGCGGGGGCGGGCAAGGACTCACAAGACGCGTTTGGACAAACCCCGCTGA
TTACTTTAGCCGGTCATGGACACCTCCCTTTCGTGGAGGCTTTGTTAACC
ACCGGCGCTAGTTTGTCGCTCGAGTGCGTCAACACTTTTTCCCTTGCTGA
CGATCCTGGCTGTACTGCTATCCACGTTGCCGCCAGCGAAGGGCACGATG
GGGCGGTGATTGCCCTATTCCGTGGAGGGGCACACGCTAACGAACAGGAC
AAGAATCAACAGACTCCGCTGTACATGGCAGCGCGTGGAGGCCATCTATC
GGTCGTCGAGAATCTGGTGGAGGCCGACGCCAACCCCAATGCCCGTAGTG
TTGAAGGAGACTCCAAATCCGCGCTCGATCACGCGGCCTCGTTAGGGCAC
GTTCTCATGATCAAACCCCCTGTTGACGGCGGGGCCGACGTCAACGCCCA
TCATAGAGGCCGCTCGGCGCTCCACTTCGCGGGCTTAAACGACCGGCCTG
GCGCCATCGCGGCGCTCATCGAGGCGGGGGGTGAAACCGAGCTGAAGATG
CTATCGGACGAATACGCTGCCGAGGAATCGGTAATCGCGGCGGTGGATAG
GAGGAGTGGTTCCACTCCTCTCCTATCCGCCGCGAGTGGTGCGCGGGGGA
AAGCAATGGAGGTTCTGCTGCAGCACGGCGCAGCGGTGAATGCGCAAGAC
GACAATGGACACTCGCCCCTGCACTTGGTTTGCGCGGCAAGCCGGCGGGC
AGATGCAGAAGAGGCTGTGGCCATCCTTGCTGCGGTGGGGAGCTGA
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