mRNA_C-linearis_contig93.16917.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.360e-24 Identity = 89/254 (35.04%), Postives = 128/254 (50.39%), Query Frame = 1 Query: 1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNT----FSLADDPGCTAIHVAASEGHDGAVIALF-RGGAHANEQDKNQQTPLYMAA-RGGHLSVVENLVEADANPNARSVEGDSK-----SALDHAASLGHVLMIKPPVDGGADVNAHHR-GRSALHFAGLNDRPGAIAALIEAGGETELKMLSD 726 G TPLM AA+ GH PV+ TLL A R + T + A GG++ I +ALL GA KDS A G+TPL+ + GHLP V+ LL A ++L + L D+ CTA+H A + GH G V AL +GG + D + T L++A G L ++E L+ A A+P+ R G + +A ++G + K +D GADVN+ G + LH A + A+ L+ G E + D Sbjct: 86 GYTPLMKAAENGHMPVMETLLDQGADATFRHLDDGSTSIIAAALGGYNEIVIALLNKGADKDSPAANGRTPLMEASRKGHLPVVKTLLNADADVTLAAHGLTDEDYCLGDN--CTALHFATAGGHLGVVNALLSKGGLEIDAVDTDGTTALHLAVIMGRSLPIMETLLVAGADPDIRINTGGVQDCPLETACHSKDNIGTYHVCKTLIDHGADVNSRCPFGSTPLHHACDYSQSDAVLRLLLQAGADENALNDD 337
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A7R8ZMZ3_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZMZ3_9CRUS) HSP 1 Score: 85.9 bits (211), Expect = 8.560e-15 Identity = 87/297 (29.29%), Postives = 134/297 (45.12%), Query Frame = 1 Query: 7 TPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIA--LFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNAHHR-GRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPL 888 TPL A G VV LLA +A ++ ++ LH+ + A L+ GA + +D FG+TPL + H +E LL GA ++ D + +H+ S A IA L A N +D+N +TPL++AA V+E L+ A+PN ++ + +A H+L+ K GADVNA G++ L A DR + L+ G + + +++Y TPL A S + E+L+Q GA VNA+DD+G +PL Sbjct: 414 TPLFQAIFNGAHSVVEVLLAHEADPNIIDS-LGRSSLHWTASAE---TAELLIMKGAAVNPKDKFGETPLFVATQNDHHSIIEVLLAHGADPNIT--------DSSETSPLHIVKS-----AEIAQLLIEKNADVNARDRNNETPLFIAAIKNRHPVIEALLAGGADPNIANIYKGYPLHMAKSAETAHLLIEK-----GADVNAKAEVGKTPLFIATDRDRHSVVEVLLAHGADPNI---ANKYQR--------------TPLHEAKSA---ETAELLMQKGADVNAKDDDGGTPL 668
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: M2UFG2_COCH5 (Uncharacterized protein (Fragment) n=2 Tax=Cochliobolus heterostrophus TaxID=5016 RepID=M2UFG2_COCH5) HSP 1 Score: 81.6 bits (200), Expect = 7.820e-14 Identity = 77/252 (30.56%), Postives = 121/252 (48.02%), Query Frame = 1 Query: 7 TPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLH----FAVTGGHDGIAMA--LLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVA----ASEGHDGAVIA--LFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASL-------GHVLMIKPPVDGGADVNAH-HRGRSALHFAGLNDRPGAIAALIEAGGE 702 TPL A++ GH +V LL + A ++ + TVLH F + +D IA+ LL A D++D +TPL + GHL VEALL GA ++ +C G T +H A +S +D + L A + +D +TPLY A+ GGHL +VE L+E A N + +G + HAA ++ ++K + AD++A ++ R+ L+FA + AL+E G + Sbjct: 108 TPLYFASEGGHLQLVEALLE-EGAEVNKQCKKGMTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDDEWRTPLYFASEGGHLQLVEALLEEGAEVNKQCKK--------GMTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDDEWRTPLYFASEGGHLQLVEALLEEGAEVNKQCKKG---MTVLHAACRFKSSPPNDNIAVVKLLLAKKADIDARDYQMRTPLYFASEGGHLQLVEALLEEGAD 347
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: UPI001EAFE071 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFE071) HSP 1 Score: 80.1 bits (196), Expect = 7.540e-13 Identity = 80/328 (24.39%), Postives = 142/328 (43.29%), Query Frame = 1 Query: 1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALL-RAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLS---------LECV---------------NTFSLA--DDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNA-HHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPLHLVC 900 GETP+M+AA+ GH V L+ ++ + + + +LH A GG+ I ++ + S+D G+TP++ A +GH + L+ G SL+ L C ++ LA D G T I VAA GH L G D + + L+ A GG++ +V++++ D + + S + + ++ + AA GH + V+ G + GR+ LH A + GG ++ + +++SV A + TP++ AA ++L+ G ++ DD+G + LH C Sbjct: 791 GETPIMVAAENGHKNVFDLLVNKRCSLTTVD-DSGRNILHCACVGGNVHIVKYIISQDSVDLASKDKEGETPIVLAAENGHKNVFDVLVNKGCSLTAVDDSDRNILHCACVGGNVQIVEYIISQDSVDLASKDKEGETPIMVAAENGHKNVFDLLVNKGCSLTTVDDSGRNILHCACVGGNVQIVKDIISQD-SVDLASKDKEGETPIMVAAENGHKNVFDVLVNKGCSLTTVDDSGRNILHCACV-------------GGNVQIVK---DIISQDSVDLASKDKEAETPIMVAAENGHKNVFDLLVNKGCSLTTVDDSGRNILHCAC 1100
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: UPI00201FA5C7 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201FA5C7) HSP 1 Score: 78.6 bits (192), Expect = 2.360e-12 Identity = 81/326 (24.85%), Postives = 136/326 (41.72%), Query Frame = 1 Query: 1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAG-AGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAV-IALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPV--DGGADVNAHHR-GRSALHFAGLNDRPGAIAALIE--------------------AGGETELKMLSDEYAAEE-SVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPLHLVC 900 G+TP+M+AA+ GH V L+ ++ + + +LH A GG+ I ++ G +D GQTP++ A +GH + L+ SL+ DD G +H A G+ V + +G +DK QTP+ +AA GH +V + LV+ N + DS + H A +G + I + G D+ + + G++ + A N L++ GG ++ EY + SV R G TP++ AA ++L+ G ++ DD+G + LH C Sbjct: 398 GQTPIMVAAKNGHKNVFDLLVDKGCSLTTVDKSG-RNILHCACVGGNVQIVEYIISHGPVDLTRKDGEGQTPIMLAAENGHKNVFDLLVDKRCSLTT--------VDDSGGNILHCACVGGNVQIVEYIISQGSVDLTSKDKEGQTPIMLAAENGHKNVFDLLVKKRCN---LTTVDDSGGNILHCACVGGNVQIIEYIISQGSVDLTSKDKEGQTPIMLAAENGHKNVFDLLVDKRCSLTTVDDSGGNILHCACVGGNVQIV----EYIISQGSVDLTSTDREGQTPIMVAAENGYKNVFDLLVNKGCSLTTVDDSGRNILHCAC 707
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A2K3CTM6_CHLRE (HET domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CTM6_CHLRE) HSP 1 Score: 78.6 bits (192), Expect = 2.580e-12 Identity = 87/290 (30.00%), Postives = 122/290 (42.07%), Query Frame = 1 Query: 115 LHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNAHHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASG------ARGKAMEVLLQHGAAVNA--QDDNGHSPLHLVCAASRRADAEEAVAILAAVGS 960 LH AV G + LL GA ++ DA TPL+ GH+ V LL GA++ + L+++ TA+HVAA+ G V AL GA+ +D TPL +AAR GHL VVE L+ + + + + L H+A H +AL AG N +AA AG E + E + A + LL+ S A A++ LL + AVNA QD+ GH +HL EA+A L VG+ Sbjct: 575 LHAAVEAGRTAEVLELLAEGAFIEALDANASTPLLMAVCAGHVEVVHVLLEAGAAVQV------CLSEEERNTALHVAAARGDPAVVQALLAAGANIGARDAAGCTPLSVAAREGHLPVVELLLATSGGKDVDAKDNAGNTPLHHSA-------------------IHEDVAAALQAAGAN-----VAARNLAGQTAEDTRRALETRKAAGMPARPPQSDAERTLLAECSKPPQHRRAVAAAVKRLLVNDMAVNANAQDEEGHCAVHLAAGNGHT----EALAALLMVGA 830
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: G1M2H5_AILME (BCL3 transcription coactivator n=13 Tax=Laurasiatheria TaxID=314145 RepID=G1M2H5_AILME) HSP 1 Score: 77.4 bits (189), Expect = 3.650e-12 Identity = 66/200 (33.00%), Postives = 102/200 (51.00%), Query Frame = 1 Query: 313 ADDPGCTAIHVAASEGHDGAV---IALFR-GGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEGDSKS--ALDHAASLGHVLMIKPPVDGGADVNA-HHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAMEVLLQHGAAVNAQDDNGHSPLH 891 AD+ G T +H+A +G+ GAV ++LF+ GG + + +QTPL++A SVV LV A A+P A G + + A +H + ++ G D+ A ++ G +ALH A + P A+ L+E G + + AVD +SG +PL+ A +++LLQHGA VNAQ +G S LH Sbjct: 128 ADEDGDTPLHIAVVQGNLGAVHRLVSLFQHGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVMAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTVDLEARNYDGLTALHVAVNMECPEAVLLLLERGADID----------------AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 311
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A6H5HWJ0_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5HWJ0_9HYME) HSP 1 Score: 77.4 bits (189), Expect = 4.680e-12 Identity = 95/354 (26.84%), Postives = 151/354 (42.66%), Query Frame = 1 Query: 1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHD-GIAMALLR------AGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALF-------RGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEG---------------------------------DSK-----SALDHAASLGHVLMIKPPVDGGADVNA-HHRGRSALHFAGLNDRPGAIAALIEAGGETELKMLSDEYAAEESVIAAVDRRSGSTPLLSAASGARGKAM-EVLLQHGAAVNAQDDNGHSPLHLVC 900 G TPL +AA G+ +V LL A + E T LH T D G+ + D++D FG TPL A G L VE LL A + ++ G T +HV D ++ F + +D+ TPL++AA GG+L +VE L++ A+PN+ + EG D+K + L AA+ G++++++ + AD N+ + G + LH + G +A + M++D+ ++ I A D++ G++PL A S R + + EVLL GA N ++ G +PLHLVC Sbjct: 197 GNTPLHLAAAGGYLILVELLLKRQADPNSTNEEGL-TPLHVICTRNKDDGLLKEFFKIVDEIPTSVQVDAKDRFGNTPLHLAAAGGKLKLVELLLKRQADPNST--------NEEGLTPLHVICKRDKDDGLLKEFFKIVDEIPTSVQVDAKDRFGNTPLHLAAAGGYLILVELLLKRQADPNSTNEEGLTPLHVICTRNKDDGLLKEFFKIVDEIPTSVQVDAKDRFGNTPLHLAAAGGYLILVELLLKRQADPNSTNEEGLTPLHVICKREVDGGLAR--------QFFMVADDMK-KQVRINAQDKK-GNSPLHFALSRCRNRGLVEVLLHRGADPNLANEEGQTPLHLVC 531
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A4Q4P0E4_9PLEO (NACHT domain-containing protein n=1 Tax=Alternaria tenuissima TaxID=119927 RepID=A0A4Q4P0E4_9PLEO) HSP 1 Score: 77.4 bits (189), Expect = 5.600e-12 Identity = 63/212 (29.72%), Postives = 92/212 (43.40%), Query Frame = 1 Query: 85 ARETEFFQTVLHFAVTGGHDGIAMALLRAGAGKDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQTPLYMAARGGHLSVVENLVEADANPNARSVEG-DSKSALDHAASLGHVLMIKPPVDGGADVNAHHRG--RSALHFAGLNDRPGAIAALIEAGGETEL 711 + E + T LH A +ALL+ G +D +G+TPL+ A G VE LL G+S+ PGCTA+H+AA GH V L GA N Q TP+ A G VV+ L++A A+ + DS + + A ++ M++ + G DVN +AL A + L+EAG + L Sbjct: 672 SENNEPWTTGLHLAAEFNLKNAIVALLQRGFDPGRRDLYGRTPLLVAAETGSKAAVEQLLKHGSSMEERTDERHH--HSPGCTALHIAAKNGHVAIVRLLLDRGAVINLQSLYHDTPISSAVELGQAEVVQVLLDAGADRTFHNTGSLDSTTLMSIAVLNENIKMVQFLIAAGVDVNERDESLHATALWDAACLQSVDCVRVLLEAGADPNL 881
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 8.170e-12 Identity = 94/301 (31.23%), Postives = 132/301 (43.85%), Query Frame = 1 Query: 1 GETPLMIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLRAGAG---------KDSQDAFGQTPLITLAGHGHLPFVEALLTTGASLSLECVNTFSLADDPGCTAIHVAASEGHDGAVIALFRGGAHANEQDKNQQT-PLYMAARGGHLSVVENLVEADANPNARSVEGDSKSALDHAASLGHVLMIKPPVDGGADVNAHHRGRSALHFAGLNDRPG-AIAALIEAGGETELKMLSDEYAAEESVIAA----VDRRSGSTPLLSAASGARGKAMEV---LLQHGA 849 G T LM AA +G+ +V LL A ++ T+ T LHFA+ G + + AL++AGA +S+ GQTPL AG G + AL+ GA N S D G TA+++AA G+ AV LF+ AN + T PL +A GGHL VV+ LV+ + +D A G + ++ A H + L AG+ D G A+ IE E LK+L E ++ +D + PLL A RG A + LL HGA Sbjct: 52 GVTALMCAANKGYLRIVRVLLRFGADVSV-STDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGA-------NVDSRMSD-GSTAMYIAACLGNLEAVEILFQ--KKANPLLRVGPTHPLDIATHGGHLGVVQELVQ--------------RFGIDGCADEGAIGALET-----AAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGSEHMVERNYTNIDN-ARENPLLCAFGTGRGHAPRITRFLLDHGA 321 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16917.1 >prot_C-linearis_contig93.16917.1 ID=prot_C-linearis_contig93.16917.1|Name=mRNA_C-linearis_contig93.16917.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=316bp MIAAQEGHFPVVMTLLAVDAAIAARETEFFQTVLHFAVTGGHDGIAMALLback to top mRNA from alignment at C-linearis_contig93:333530..334492- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16917.1 ID=mRNA_C-linearis_contig93.16917.1|Name=mRNA_C-linearis_contig93.16917.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=963bp|location=Sequence derived from alignment at C-linearis_contig93:333530..334492- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:333530..334492- >mRNA_C-linearis_contig93.16917.1 ID=mRNA_C-linearis_contig93.16917.1|Name=mRNA_C-linearis_contig93.16917.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at C-linearis_contig93:333530..334492- (Chordaria linearis ClinC8C monoicous)back to top |