mRNA_C-linearis_contig93.16909.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16909.1
Unique NamemRNA_C-linearis_contig93.16909.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:287794..288392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size406
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.3367422-CDS-C-linearis_contig93:287793..2878831622930796.3367422-CDS-C-linearis_contig93:287793..287883Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 287794..287883 +
1690881254.754626-CDS-C-linearis_contig93:287793..2878831690881254.754626-CDS-C-linearis_contig93:287793..287883Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 287794..287883 +
1622930796.3669088-CDS-C-linearis_contig93:288077..2883921622930796.3669088-CDS-C-linearis_contig93:288077..288392Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 288078..288392 +
1690881254.7650177-CDS-C-linearis_contig93:288077..2883921690881254.7650177-CDS-C-linearis_contig93:288077..288392Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 288078..288392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16909.1prot_C-linearis_contig93.16909.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 287794..288392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16909.1

>prot_C-linearis_contig93.16909.1 ID=prot_C-linearis_contig93.16909.1|Name=mRNA_C-linearis_contig93.16909.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=135bp
GEASCEEAVAGRAVRALRSSPHVKSVYREKALTRGISAVPDLDLDEKQKG
EDVLPPLNPDHTEDKPGVKVAAHSDGHESGDVGTSANTYISTRAFLSTES
RPQEQEQQQQESLWSGGGEAGEGQRRRLEGGGNGG
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mRNA from alignment at C-linearis_contig93:287794..288392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16909.1 ID=mRNA_C-linearis_contig93.16909.1|Name=mRNA_C-linearis_contig93.16909.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at C-linearis_contig93:287794..288392+ (Chordaria linearis ClinC8C monoicous)
GGGGAGGCGTCTTGTGAGGAAGCTGTGGCGGGACGGGCTGTGCGGGCTCT
CCGGAGCAGCCCACATGTCAAGAGCGTATATCGAGAAAAGGTGTGTCTAC
CAGAAGAAACCTATTTAACGCTGTCCAGCTCATACGCTTGCTGGAAATTG
CTTGGAACAATACTTTGGAGAACCCCTCTTTACTGTTGTTGTCCTGTCCT
ACCTTGCCTGTGCTTTTTTTATCCTACCCTGTCCTTCCCTATCCCATCCC
ATCCTGTCCTATCCTGCCCTAACCACCCTGGTAGGCGCTCACGAGAGGCA
TCTCGGCGGTCCCTGACCTCGACCTCGACGAGAAACAAAAGGGCGAGGAC
GTGCTTCCCCCATTGAACCCGGACCACACCGAAGATAAACCGGGCGTGAA
GGTGGCCGCCCACTCGGACGGACACGAAAGCGGAGATGTCGGCACCAGCG
CTAACACGTACATAAGCACAAGAGCCTTCCTGAGCACTGAATCCAGGCCG
CAGGAGCAGGAGCAGCAGCAGCAGGAGTCCCTGTGGTCGGGAGGCGGAGA
AGCGGGGGAAGGGCAGCGGCGACGCCTAGAAGGCGGTGGCAACGGCGGC
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Coding sequence (CDS) from alignment at C-linearis_contig93:287794..288392+

>mRNA_C-linearis_contig93.16909.1 ID=mRNA_C-linearis_contig93.16909.1|Name=mRNA_C-linearis_contig93.16909.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at C-linearis_contig93:287794..288392+ (Chordaria linearis ClinC8C monoicous)
GGGGAGGCGTCTTGTGAGGAAGCTGTGGCGGGACGGGCTGTGCGGGCTCT
CCGGAGCAGCCCACATGTCAAGAGCGTATATCGAGAAAAGGGGGAGGCGT
CTTGTGAGGAAGCTGTGGCGGGACGGGCTGTGCGGGCTCTCCGGAGCAGC
CCACATGTCAAGAGCGTATATCGAGAAAAGGCGCTCACGAGAGGCATCTC
GGCGGTCCCTGACCTCGACCTCGACGAGAAACAAAAGGGCGAGGACGTGC
TTCCCCCATTGAACCCGGACCACACCGAAGATAAACCGGGCGTGAAGGTG
GCCGCCCACTCGGACGGACACGAAAGCGGAGATGTCGGCACCAGCGCTAA
CACGTACATAAGCACAAGAGCCTTCCTGAGCACTGAATCCAGGCCGCAGG
AGCAGGAGCAGCAGCAGCAGGAGTCCCTGTGGTCGGGAGGCGGAGAAGCG
GGGGAAGGGCAGCGGCGACGCCTAGAAGGCGGTGGCAACGGCGGCGCGCT
CACGAGAGGCATCTCGGCGGTCCCTGACCTCGACCTCGACGAGAAACAAA
AGGGCGAGGACGTGCTTCCCCCATTGAACCCGGACCACACCGAAGATAAA
CCGGGCGTGAAGGTGGCCGCCCACTCGGACGGACACGAAAGCGGAGATGT
CGGCACCAGCGCTAACACGTACATAAGCACAAGAGCCTTCCTGAGCACTG
AATCCAGGCCGCAGGAGCAGGAGCAGCAGCAGCAGGAGTCCCTGTGGTCG
GGAGGCGGAGAAGCGGGGGAAGGGCAGCGGCGACGCCTAGAAGGCGGTGG
CAACGGCGGC
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