mRNA_C-linearis_contig93.16908.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16908.1
Unique NamemRNA_C-linearis_contig93.16908.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16908.1 vs. uniprot
Match: A0A6H5K166_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K166_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.010e-7
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  406 LPSITSGRPGEARAAYIVQWTGYHPLEEHPELLAGALRGYDRCSVIVGGVDTGVQEGRVDG---DSVGACSS 612
            +P+ TSG  GE  A Y+VQWT +HPLE+H  LL+GAL G+DRC    GG +     G  D    DSV A S+
Sbjct:  285 IPASTSGSGGEVLAQYVVQWTDFHPLEDHSSLLSGALGGFDRCCS--GGCEASGVHGSSDARARDSVDASST 354
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BLAST of mRNA_C-linearis_contig93.16908.1 vs. uniprot
Match: D7FUM0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUM0_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-6
Identity = 34/72 (47.22%), Postives = 43/72 (59.72%), Query Frame = 1 
Query:  406 LPSITSGRPGEARAAYIVQWTGYHPLEEHPELLAGALRGYDRCSVIVGGVDTGVQEGRVDG---DSVGACSS 612
            +P+ TSG  GE  A Y+VQWT +HPLE+H  LL+ AL G+DRC    GG +     G  D    DSV A S+
Sbjct:   15 IPASTSGPRGEVLAQYVVQWTDFHPLEDHNSLLSRALGGFDRCGS--GGCEASDVHGSSDARARDSVDASST 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K166_9PHAE1.010e-748.61Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D7FUM0_ECTSI1.280e-647.22Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:285982..287761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue9e-07
Seed eggNOG ortholog2880.D7FUM0
Preferred nameMBTPS1
KEGG koko:K08653
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005794,GO:0005795,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006606,GO:0006629,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0006972,GO:0006984,GO:0006986,GO:0006991,GO:0006996,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008237,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0017038,GO:0017171,GO:0019216,GO:0019218,GO:0019219,GO:0019222,GO:0019538,GO:0023052,GO:0030968,GO:0031090,GO:0031293,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031984,GO:0032933,GO:0033036,GO:0033365,GO:0033554,GO:0033619,GO:0034504,GO:0034613,GO:0034620,GO:0034976,GO:0035103,GO:0035966,GO:0035967,GO:0036211,GO:0036500,GO:0042175,GO:0042221,GO:0042538,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045540,GO:0045893,GO:0045935,GO:0045944,GO:0046890,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050810,GO:0050896,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0062012,GO:0065007,GO:0070011,GO:0070013,GO:0070727,GO:0070887,GO:0071310,GO:0071501,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0080171,GO:0090181,GO:0098588,GO:0098791,GO:0098827,GO:0106118,GO:0140096,GO:1901564,GO:1902680,GO:1902930,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG1404@1,KOG4266@2759
EC3.4.21.112
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Exons3
Model size987
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16908.1prot_C-linearis_contig93.16908.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 286891..287593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.1967058-UTR-C-linearis_contig93:285981..2860931622930796.1967058-UTR-C-linearis_contig93:285981..286093Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 285982..286093 +
1690881254.6938744-UTR-C-linearis_contig93:285981..2860931690881254.6938744-UTR-C-linearis_contig93:285981..286093Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 285982..286093 +
1622930796.2169552-UTR-C-linearis_contig93:286849..2868901622930796.2169552-UTR-C-linearis_contig93:286849..286890Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 286850..286890 +
1690881254.7116528-UTR-C-linearis_contig93:286849..2868901690881254.7116528-UTR-C-linearis_contig93:286849..286890Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 286850..286890 +
1622930796.2798052-UTR-C-linearis_contig93:287593..2877611622930796.2798052-UTR-C-linearis_contig93:287593..287761Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 287594..287761 +
1690881254.7446315-UTR-C-linearis_contig93:287593..2877611690881254.7446315-UTR-C-linearis_contig93:287593..287761Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 287594..287761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.2333431-CDS-C-linearis_contig93:286890..2874021622930796.2333431-CDS-C-linearis_contig93:286890..287402Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 286891..287402 +
1690881254.7236478-CDS-C-linearis_contig93:286890..2874021690881254.7236478-CDS-C-linearis_contig93:286890..287402Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 286891..287402 +
1622930796.2649713-CDS-C-linearis_contig93:287439..2875931622930796.2649713-CDS-C-linearis_contig93:287439..287593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 287440..287593 +
1690881254.7340622-CDS-C-linearis_contig93:287439..2875931690881254.7340622-CDS-C-linearis_contig93:287439..287593Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 287440..287593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16908.1

>prot_C-linearis_contig93.16908.1 ID=prot_C-linearis_contig93.16908.1|Name=mRNA_C-linearis_contig93.16908.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=222bp
MTRTSGAGEICRHDGWRAALTLSALAAQLSSNGVSSTSTIATPSPDYAFR
ESERASSTVGMVSPAVSTALPVAGDPVAAKSKFFLPSITSGRPGEARAAY
IVQWTGYHPLEEHPELLAGALRGYDRCSVIVGGVDTGVQEGRVDGDSVGA
CSSGGGSGDSGSSSSSSSSSRTTTTVATAAAGRWWREKALPPRGKNTPAT
SRWSAGFRCVNREQCQTTSTP*
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mRNA from alignment at C-linearis_contig93:285982..287761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16908.1 ID=mRNA_C-linearis_contig93.16908.1|Name=mRNA_C-linearis_contig93.16908.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1780bp|location=Sequence derived from alignment at C-linearis_contig93:285982..287761+ (Chordaria linearis ClinC8C monoicous)
CGAGGAGGGGGCCCCGGTAGCGGGCCTGGCAAGAGGAAAGAGGCGGGGCA
CGGGTACACCCGTGTCGGAGGGGAGGGGAGCGGCAAAGCCGGGATCGGAA
GCTCATCACGAGGTAGGGTGTTTAATTGGCGGCGTGAAAACAGCAGAGAG
AGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCTGGTTTGTAC
ATACCCGCAGGCGACGGGGTTTTTGTGTACATAATCCAGGTAGAGCAGGC
CGATGCGTGGGTGTGTGGGGCGTCTCGTGGCTCGTGGCCCTCCGCAAAGA
CTCATAACTGAGGTCGCACGGCTTGCTTCAGGTGTTCTGGGCCAAGAGCG
CATGTCGTGAACCTCTCGCCAACAACAGCAGCAGCCCGCGTTTTGCACCG
ACAGCGGAGTATTATGCTGTCTCGCATGGGTCCCACTTTTCCAGGGTATC
TCCCCGCAACCCCGCTTCCGTCTACATCTAGGGCAAGTGTTCTGGTGTTT
TGGGGTCAGGGCTTTTCTGCTGCAAGGCTGTGCTGAAGCTGAAGTGTTTC
CCGTTTCTTGTATGGCGCCACAGCAGCAGCAGGTGTGTGTTCTTCAACCC
CACGCAGCAAACACCCTTTTCCTCGCCGAGCCGCCTTGCACTGGGAGCAC
CGCGCGATGGCCGAACGCCTGCCCCAGCGCGCGGGCGGGGCATTTCGTGC
GGCTGTCCGGGTGGTTGCCTCCCCTGCCGTGTAGGCTGTATTTTCCGGCA
ATATTGGAAGGTCACAGGTGTACTAACTAGTACAGCAGCACATGCTGCTG
CTGTTCGCCAAGCGATGTCTCCCACACCGGCATCCGCTCGTCGTCCCGCT
CGCACCACTCCTGCCCAGGAAAAAAGCTAGAGAGAGAGAGAGAGAGGGAG
ACTAAAGACATGACAAGAACCTCCGGCGCCGGCGAGATATGCCGGCACGA
TGGCTGGCGCGCCGCCCTCACCCTGTCGGCCCTGGCGGCCCAGCTTTCGT
CAAACGGCGTCTCGTCCACCTCCACGATCGCCACTCCGTCGCCAGATTAT
GCTTTTCGAGAGTCTGAGAGGGCGTCATCGACCGTCGGCATGGTGTCGCC
AGCCGTCAGTACGGCGTTGCCGGTAGCAGGTGATCCTGTTGCTGCTAAAT
CGAAGTTTTTCTTGCCCAGCATCACGTCTGGCAGGCCCGGCGAAGCGCGG
GCGGCGTACATCGTACAGTGGACGGGCTACCACCCGCTGGAGGAGCACCC
AGAGCTGCTAGCTGGGGCGTTGCGGGGCTACGACCGCTGCTCCGTCATCG
TTGGCGGCGTGGATACTGGGGTTCAGGAGGGAAGGGTGGACGGGGATAGC
GTTGGCGCCTGCAGCAGCGGCGGCGGCAGTGGTGACAGCGGTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCGGTGGAAATTACGACGCTGGCA
ACGACGACGACGACGACAACCGTTGCCACGGCTGCTGCTGGGAGATGGTG
GAGAGAAAAAGCGCTGCCACCGCGGGGAAAAAACACCCCAGCGACTTCTC
GCTGGTCCGCTGGCTTCCGCTGCGTCAATCGAGAGCAATGTCAAACGACG
TCCACGCCCTGAAAGAACAGGGCGAAGACACCCCCCTGGAGCAACATCCT
CAAGGGGAAAAGGGAGAGAGAGAGGAGTTGCGTCGGGGTGAAGAAGACTA
CCGGGAGGAGCCGACGTGTAGGCTTCAAGCTAGAGATCCGCGTGGGGAGA
CGGAGCGTCATCGAGGCCCCATGAGCCGGG
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Coding sequence (CDS) from alignment at C-linearis_contig93:285982..287761+

>mRNA_C-linearis_contig93.16908.1 ID=mRNA_C-linearis_contig93.16908.1|Name=mRNA_C-linearis_contig93.16908.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1332bp|location=Sequence derived from alignment at C-linearis_contig93:285982..287761+ (Chordaria linearis ClinC8C monoicous)
ATGACAAGAACCTCCGGCGCCGGCGAGATATGCCGGCACGATGGCTGGCG
CGCCGCCCTCACCCTGTCGGCCCTGGCGGCCCAGCTTTCGTCAAACGGCG
TCTCGTCCACCTCCACGATCGCCACTCCGTCGCCAGATTATGCTTTTCGA
GAGTCTGAGAGGGCGTCATCGACCGTCGGCATGGTGTCGCCAGCCGTCAG
TACGGCGTTGCCGGTAGCAGGTGATCCTGTTGCTGCTAAATCGAAGTTTT
TCTTGCCCAGCATCACGTCTGGCAGGCCCGGCGAAGCGCGGGCGGCGTAC
ATCGTACAGTGGACGGGCTACCACCCGCTGGAGGAGCACCCAGAGCTGCT
AGCTGGGGCGTTGCGGGGCTACGACCGCTGCTCCGTCATCGTTGGCGGCG
TGGATACTGGGGTTCAGGAGGGAAGGGTGGACGGGGATAGCGTTGGCGCC
TGCAGCAGCGGCGGCGGCAGTGGTGACAGCGGTAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGATGACAAGAACCTCCGGCGCCGGCGAGATATGCCGGCA
CGATGGCTGGCGCGCCGCCCTCACCCTGTCGGCCCTGGCGGCCCAGCTTT
CGTCAAACGGCGTCTCGTCCACCTCCACGATCGCCACTCCGTCGCCAGAT
TATGCTTTTCGAGAGTCTGAGAGGGCGTCATCGACCGTCGGCATGGTGTC
GCCAGCCGTCAGTACGGCGTTGCCGGTAGCAGGTGATCCTGTTGCTGCTA
AATCGAAGTTTTTCTTGCCCAGCATCACGTCTGGCAGGCCCGGCGAAGCG
CGGGCGGCGTACATCGTACAGTGGACGGGCTACCACCCGCTGGAGGAGCA
CCCAGAGCTGCTAGCTGGGGCGTTGCGGGGCTACGACCGCTGCTCCGTCA
TCGTTGGCGGCGTGGATACTGGGGTTCAGGAGGGAAGGGTGGACGGGGAT
AGCGTTGGCGCCTGCAGCAGCGGCGGCGGCAGTGGTGACAGCGGTAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGACGACGACAACCGTTGCCACGGCTG
CTGCTGGGAGATGGTGGAGAGAAAAAGCGCTGCCACCGCGGGGAAAAAAC
ACCCCAGCGACTTCTCGCTGGTCCGCTGGCTTCCGCTGCGTCAATCGAGA
GCAATGTCAAACGACGTCCACGCCCTGAGACGACGACAACCGTTGCCACG
GCTGCTGCTGGGAGATGGTGGAGAGAAAAAGCGCTGCCACCGCGGGGAAA
AAACACCCCAGCGACTTCTCGCTGGTCCGCTGGCTTCCGCTGCGTCAATC
GAGAGCAATGTCAAACGACGTCCACGCCCTGA
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