mRNA_C-linearis_contig93.16906.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16906.1
Unique NamemRNA_C-linearis_contig93.16906.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:262509..262733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.1353512-CDS-C-linearis_contig93:262508..2625961622930796.1353512-CDS-C-linearis_contig93:262508..262596Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 262509..262596 +
1690881254.6731224-CDS-C-linearis_contig93:262508..2625961690881254.6731224-CDS-C-linearis_contig93:262508..262596Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 262509..262596 +
1622930796.1491518-CDS-C-linearis_contig93:262626..2627331622930796.1491518-CDS-C-linearis_contig93:262626..262733Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 262627..262733 +
1690881254.6825614-CDS-C-linearis_contig93:262626..2627331690881254.6825614-CDS-C-linearis_contig93:262626..262733Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 262627..262733 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16906.1prot_C-linearis_contig93.16906.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 262509..262733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16906.1

>prot_C-linearis_contig93.16906.1 ID=prot_C-linearis_contig93.16906.1|Name=mRNA_C-linearis_contig93.16906.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=65bp
MHAVCVCFRPIYFGDSPFRSRRDVYYTLRLYFSVQLEPTGVTQEGVNTGA
FFFFFCFFFAPPSSC
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mRNA from alignment at C-linearis_contig93:262509..262733+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16906.1 ID=mRNA_C-linearis_contig93.16906.1|Name=mRNA_C-linearis_contig93.16906.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at C-linearis_contig93:262509..262733+ (Chordaria linearis ClinC8C monoicous)
ATGCATGCAGTATGTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCC
CTTCCGATCAAGGCGAGACGTGTACTACACGTTGCGGTGTATTTAGAGTA
CGTAATACACTTGTTCAGTGTATTTTTCTGTACAACTAGAACCAACCGGG
GTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTTTTCTGTTT
CTTTTTTGCCCCACCTTCCTCCTGC
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Coding sequence (CDS) from alignment at C-linearis_contig93:262509..262733+

>mRNA_C-linearis_contig93.16906.1 ID=mRNA_C-linearis_contig93.16906.1|Name=mRNA_C-linearis_contig93.16906.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at C-linearis_contig93:262509..262733+ (Chordaria linearis ClinC8C monoicous)
ATGCATGCAGTATGTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCC
CTTCCGATCAAGGCGAGACGTGTACTACACGTTGCGGTATGCATGCAGTA
TGTGTGTGTTTTCGTCCCATTTATTTTGGCGACAGTCCCTTCCGATCAAG
GCGAGACGTGTACTACACGTTGCGGTTGTATTTTTCTGTACAACTAGAAC
CAACCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTT
TTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGCTGTATTTTTCTGTACAA
CTAGAACCAACCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTT
CTTCTTTTTCTGTTTCTTTTTTGCCCCACCTTCCTCCTGC
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