mRNA_C-linearis_contig93.16905.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16905.1
Unique NamemRNA_C-linearis_contig93.16905.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.290e-38
Identity = 80/94 (85.11%), Postives = 83/94 (88.30%), Query Frame = 2 
Query:   38 MLRLVALAISISVLFPSLSSERRGRMIIFFLGWFSGPMYVMSQFIMSVMVLNCWTSKDDSGEFIYFLKFVELAVLNLWFISSLAITILIASIVQ 319
            MLRLVAL ISISVLFP LSSERRGRM IFFL W SG MYVMSQFIMSVMVLNCW+S+DDSG FIYFLKF+EL  LNLW ISSLAI ILIASIVQ
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQ 94
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BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 3.550e-38
Identity = 81/94 (86.17%), Postives = 83/94 (88.30%), Query Frame = 2 
Query:   38 MLRLVALAISISVLFPSLSSERRGRMIIFFLGWFSGPMYVMSQFIMSVMVLNCWTSKDDSGEFIYFLKFVELAVLNLWFISSLAITILIASIVQ 319
            MLRLVAL ISISVLFP LSSERRGRM IFFL W SG MYVMSQFIMSVMVLNCW+S+DDSG FIYFLKF EL VLNLW ISSLAI ILIASIVQ
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQ 94
[Close]
BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 6.160e-16
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 2 
Query:  119 IFFLGWFSGPMYVMSQFIMSVMVLNCWTSKDDSGEFIYFLKFVELAVLNLWFISSLAITILIASIVQ 319
            IF L W S   YV+SQ +MSVMV+NCW+SK  +G  IY LKFVEL  +NLW ISS+AI++LIASIVQ
Sbjct:    3 IFCLHWASAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQ 69
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUL6_ECTSI2.290e-3885.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRD9_9PHAE3.550e-3886.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL8_ECTSI6.160e-1664.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:260483..261261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size780
Cds size453
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.673061-UTR-C-linearis_contig93:260482..2608081622930796.673061-UTR-C-linearis_contig93:260482..260808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 260483..260808 +
1690881254.8820753-UTR-C-linearis_contig93:260482..2608081690881254.8820753-UTR-C-linearis_contig93:260482..260808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 260483..260808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930796.689656-CDS-C-linearis_contig93:260808..2612611622930796.689656-CDS-C-linearis_contig93:260808..261261Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 260809..261261 +
1690881254.8920681-CDS-C-linearis_contig93:260808..2612611690881254.8920681-CDS-C-linearis_contig93:260808..261261Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 260809..261261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16905.1prot_C-linearis_contig93.16905.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 260809..261261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16905.1

>prot_C-linearis_contig93.16905.1 ID=prot_C-linearis_contig93.16905.1|Name=mRNA_C-linearis_contig93.16905.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=151bp
MVWYGLVPGHRPPHRQHRTGTLPVSPEGSSHNVLRGNLTTRRPSHVISGV
LACALVPKGRSTPNHGQNEIAIKMSAHLSPFPQCIFYVLLGSYLRLCVLS
MRKRGVLCPAPVVREVPPGADDDRVHASGLVVRDGGGAGHGAVGDLLEWP
A
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mRNA from alignment at C-linearis_contig93:260483..261261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16905.1 ID=mRNA_C-linearis_contig93.16905.1|Name=mRNA_C-linearis_contig93.16905.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at C-linearis_contig93:260483..261261+ (Chordaria linearis ClinC8C monoicous)
TCGCGATATAACCACGTACCGACGACAGCTTGCGACGATGCTCCGGCTCG
TGGCCCTGGCCATCAGCATCTCTGTCTTGTTCCCTTCGCTCAGCTCCGAG
AGGCGCGGGCGCATGATAATATTCTTCCTGGGCTGGTTCAGCGGCCCCAT
GTACGTCATGAGTCAGTTCATCATGTCCGTCATGGTGCTCAACTGCTGGA
CGTCCAAGGATGATTCAGGCGAATTCATCTACTTCCTCAAGTTCGTCGAG
CTGGCGGTGCTGAACCTGTGGTTTATTTCCAGTCTCGCCATCACCATCCT
CATCGCCAGCATCGTGCAGGTATGATATGGTATGGTATGGTTTGGTACCT
GGTCATCGGCCTCCTCATCGCCAGCATCGTACAGGTACCTTGCCTGTTTC
CCCCGAAGGATCCAGCCATAACGTCCTTAGAGGCAACCTAACCACAAGAC
GCCCGTCTCACGTCATATCAGGCGTGTTGGCATGTGCTCTCGTTCCTAAA
GGGCGTTCAACACCAAACCACGGCCAAAACGAGATCGCGATCAAAATGTC
TGCGCACCTCTCCCCCTTTCCACAATGCATCTTCTACGTGCTTCTGGGTT
CTTATCTGCGCTTGTGCGTGTTATCCATGCGAAAACGCGGCGTCCTTTGC
CCCGCTCCAGTCGTTCGTGAAGTTCCGCCGGGTGCCGACGACGATAGGGT
CCACGCGAGCGGCCTTGTGGTGCGTGACGGTGGCGGGGCTGGCCACGGTG
CTGTCGGCGATCTTTTGGAATGGCCTGCT
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Coding sequence (CDS) from alignment at C-linearis_contig93:260483..261261+

>mRNA_C-linearis_contig93.16905.1 ID=mRNA_C-linearis_contig93.16905.1|Name=mRNA_C-linearis_contig93.16905.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at C-linearis_contig93:260483..261261+ (Chordaria linearis ClinC8C monoicous)
ATGGTATGGTATGGTTTGGTACCTGGTCATCGGCCTCCTCATCGCCAGCA
TCGTACAGGTACCTTGCCTGTTTCCCCCGAAGGATCCAGCCATAACGTCC
TTAGAGGCAACCTAACCACAAGACGCCCGTCTCACGTCATATCAGGCGTG
TTGGCATGTGCTCTCGTTCCTAAAGGGCGTTCAACACCAAACCACGGCCA
AAACGAGATCGCGATCAAAATGTCTGCGCACCTCTCCCCCTTTCCACAAT
GCATCTTCTACGTGCTTCTGGGTTCTTATCTGCGCTTGTGCGTGTTATCC
ATGCGAAAACGCGGCGTCCTTTGCCCCGCTCCAGTCGTTCGTGAAGTTCC
GCCGGGTGCCGACGACGATAGGGTCCACGCGAGCGGCCTTGTGGTGCGTG
ACGGTGGCGGGGCTGGCCACGGTGCTGTCGGCGATCTTTTGGAATGGCCT
GCTATGGTATGGTATGGTTTGGTACCTGGTCATCGGCCTCCTCATCGCCA
GCATCGTACAGGTACCTTGCCTGTTTCCCCCGAAGGATCCAGCCATAACG
TCCTTAGAGGCAACCTAACCACAAGACGCCCGTCTCACGTCATATCAGGC
GTGTTGGCATGTGCTCTCGTTCCTAAAGGGCGTTCAACACCAAACCACGG
CCAAAACGAGATCGCGATCAAAATGTCTGCGCACCTCTCCCCCTTTCCAC
AATGCATCTTCTACGTGCTTCTGGGTTCTTATCTGCGCTTGTGCGTGTTA
TCCATGCGAAAACGCGGCGTCCTTTGCCCCGCTCCAGTCGTTCGTGAAGT
TCCGCCGGGTGCCGACGACGATAGGGTCCACGCGAGCGGCCTTGTGGTGC
GTGACGGTGGCGGGGCTGGCCACGGTGCTGTCGGCGATCTTTTGGAATGG
CCTGCT
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