mRNA_C-linearis_contig93.16905.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI) HSP 1 Score: 146 bits (369), Expect = 2.290e-38 Identity = 80/94 (85.11%), Postives = 83/94 (88.30%), Query Frame = 2 Query: 38 MLRLVALAISISVLFPSLSSERRGRMIIFFLGWFSGPMYVMSQFIMSVMVLNCWTSKDDSGEFIYFLKFVELAVLNLWFISSLAITILIASIVQ 319 MLRLVAL ISISVLFP LSSERRGRM IFFL W SG MYVMSQFIMSVMVLNCW+S+DDSG FIYFLKF+EL LNLW ISSLAI ILIASIVQ Sbjct: 1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQ 94
BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE) HSP 1 Score: 146 bits (369), Expect = 3.550e-38 Identity = 81/94 (86.17%), Postives = 83/94 (88.30%), Query Frame = 2 Query: 38 MLRLVALAISISVLFPSLSSERRGRMIIFFLGWFSGPMYVMSQFIMSVMVLNCWTSKDDSGEFIYFLKFVELAVLNLWFISSLAITILIASIVQ 319 MLRLVAL ISISVLFP LSSERRGRM IFFL W SG MYVMSQFIMSVMVLNCW+S+DDSG FIYFLKF EL VLNLW ISSLAI ILIASIVQ Sbjct: 1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQ 94
BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 6.160e-16 Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 2 Query: 119 IFFLGWFSGPMYVMSQFIMSVMVLNCWTSKDDSGEFIYFLKFVELAVLNLWFISSLAITILIASIVQ 319 IF L W S YV+SQ +MSVMV+NCW+SK +G IY LKFVEL +NLW ISS+AI++LIASIVQ Sbjct: 3 IFCLHWASAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQ 69 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16905.1 >prot_C-linearis_contig93.16905.1 ID=prot_C-linearis_contig93.16905.1|Name=mRNA_C-linearis_contig93.16905.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=151bp MVWYGLVPGHRPPHRQHRTGTLPVSPEGSSHNVLRGNLTTRRPSHVISGVback to top mRNA from alignment at C-linearis_contig93:260483..261261+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16905.1 ID=mRNA_C-linearis_contig93.16905.1|Name=mRNA_C-linearis_contig93.16905.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=779bp|location=Sequence derived from alignment at C-linearis_contig93:260483..261261+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:260483..261261+ >mRNA_C-linearis_contig93.16905.1 ID=mRNA_C-linearis_contig93.16905.1|Name=mRNA_C-linearis_contig93.16905.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at C-linearis_contig93:260483..261261+ (Chordaria linearis ClinC8C monoicous)back to top |