mRNA_C-linearis_contig93.16903.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE) HSP 1 Score: 370 bits (951), Expect = 4.120e-113 Identity = 201/354 (56.78%), Postives = 251/354 (70.90%), Query Frame = 2
Query: 1013 EWAPTAFSTASAFSTPNTSYVADLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERV----HVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
+W T FST S ST +TS+VADLPRRPGHVAVRSAS +GKGD+V+V+ +AHY AV+L+ L A T+G ES+P GVL PS F +A+ +DAIR++LET+QPY D LHKFLAL++ L +T + Q V F EA+ +H+ F D++GNALPK+G+RV HD G G NVDY + E D +LLTFGGGTIGGAQNGAR+ V + SEED RL TP VAATTV TM +RL D V ARS +L++ G WL++NVVG+A V RR G+SLV T++G G+ WVYL T DN++ CW GPGF++FVTQQ CFSGYKNL HDKEGA++MEVGRSG F P
Sbjct: 82 KWEATIFST-SRISTSDTSFVADLPRRPGHVAVRSASKKGKGDLVMVITEAHYHHAVELYLGPYGL---AATDGIESDPHEGVLTGRKGRPS-FHYASTDDAIRAILETKQPYVDALHKFLALSSFLHWQTTERQANVDAKMEATFTEAELSKHSSLFVDKKGNALPKIGVRVAHDIGGGANVDYSTRGFESDPKSLLTFGGGTIGGAQNGARKLVALDSEEDFRLKTPGVAATTVDHTTMFLRLNDAAVFAARSETLFDKGSWLNKNVVGLAWV-RRRGLSLVRTREGTTRGGEPWVYLVTVIDNWEHCWSGPGFLLFVTQQGCFSGYKNLKEHDKEGARQMEVGRSGDFSTP 429
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI) HSP 1 Score: 341 bits (874), Expect = 6.620e-101 Identity = 190/359 (52.92%), Postives = 244/359 (67.97%), Query Frame = 2
Query: 1016 WAPTAFSTASAFSTPNTS------YVADLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHV----AFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
W PT FST S S P+TS +VA+LPRRPGHVAVRS S++GKGD+V+V+++ Y EAVDL++ + +G ES+P GVL N A S Q+AT EDAI ++LET+QPYGD LHKFLAL++ R +T Q ++ F E + + + F DE GNAL K+G+RV D+G G NVDYG+ E D +LLTF GTIGGAQNGAR+ + + SEED+RL TP VAA TV E+ M VRL D VL ARS +L++ G WL++NVVG+A V R G+SLV TK+G G WV+L T DN++ CW GPGFVVF+T +CF+GYKNL HD++GA +MEVGRSG F P
Sbjct: 64 WTPTVFST-SRVSAPDTSVEAHTSFVAELPRRPGHVAVRSGSSKGKGDLVMVIEKTLYTEAVDLYQGPYGRE---AKDGIESDPHEGVLPDRNGAGS-VQYATEEDAISAILETKQPYGDGLHKFLALSSFFRWQTPAKQRKMDAEMKATFTEGELFQRSSLFIDETGNALSKIGVRVASDTGRGVNVDYGARGFESDPKSLLTFNRGTIGGAQNGARKLLAIDSEEDVRLKTPEVAANTVEEKRMFVRLNDAAVLAARSETLFKKGSWLNKNVVGLAWVQGR-GLSLVRTKEGTTRGGNPWVWLVTVIDNWEYCWSGPGFVVFMTHNWCFAGYKNLKEHDRKGANQMEVGRSGDFSTP 416
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE) HSP 1 Score: 329 bits (843), Expect = 6.390e-98 Identity = 184/351 (52.42%), Postives = 235/351 (66.95%), Query Frame = 2
Query: 1031 FSTASAFSTPNTSYVADLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWP-ATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNG------ARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
F + FST TSYVADLPRR G++AVRSAS +GKG+V +VV++ HYDEAV +++ + D+ A T+G E++PR+GV+ E FQ ATR+DA+R+LLET+QPYGD LHKFLAL +++ ET + Q ++ F +AQ +H+ F DE GNALPK+G++VVHD+G G VDY G D L TFGGGTIGG+QNG +RRTV +GS ED RL P VAATTVTE TM V LYD VVL AR IGPW ENVVG+A V ++ +SLV+T+ G G+ WVY + N++ CW GP F+V VTQQ CF+G NL + DK MEVGRSG P
Sbjct: 9 FVEKATFSTDGTSYVADLPRRSGYLAVRSASIKGKGNVDIVVRRTHYDEAVRIYQ---ESDYGLAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLSQHSSLFFDEMGNALPKMGLKVVHDTGAGAAVDYDGGVQSGDSKVLWTFGGGTIGGSQNGDSGEEGSRRTVAIGSAEDERLKAPDVAATTVTESTMLVTLYDGVVLAARG-----IGPWFCENVVGVALVGPKKKLSLVKTRGGTTSGGEQWVYYVLAATNWEYCWSGPAFMVLVTQQACFTGKINLWQKDKR-VNHMEVGRSGDLSTP 350
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI) HSP 1 Score: 321 bits (823), Expect = 1.480e-95 Identity = 172/305 (56.39%), Postives = 218/305 (71.48%), Query Frame = 2
Query: 1148 LVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
+VV +HY +AV++FR R D P T+G E EP GV+ ++ APS FQ A+R DAIR+ L T+QPYGDELHKFLAL +L ET Q ++ AFPEAQ PEHA F++ A+P++ +RVVHDSG G++VD SG ++ D L+TF GG IGGAQ GARRTV++GSEED RLNTP VAATTVT+ TM + LYD VL ARS++LY+ GPWL++NVVG+AKV + G+SLV+TK+G G+ WVYL T N++ CW GP FV VT+ CFSGYKNL +HDK + MEVGRSG F P
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPSKD-APS-FQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQSPEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDR-SGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKT-TRGMEVGRSGDFSTP 301
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI) HSP 1 Score: 321 bits (823), Expect = 4.130e-95 Identity = 172/305 (56.39%), Postives = 218/305 (71.48%), Query Frame = 2
Query: 1148 LVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
+VV +HY +AV++FR R D P T+G E EP GV+ ++ APS FQ A+R DAIR+ L T+QPYGDELHKFLAL +L ET Q ++ AFPEAQ PEHA F++ A+P++ +RVVHDSG G++VD SG ++ D L+TF GG IGGAQ GARRTV++GSEED RLNTP VAATTVT+ TM + LYD VL ARS++LY+ GPWL++NVVG+AKV + G+SLV+TK+G G+ WVYL T N++ CW GP FV VT+ CFSGYKNL +HDK + MEVGRSG F P
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPSKD-APS-FQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQSPEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDR-SGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKT-TRGMEVGRSGDFSTP 301
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5LDF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDF4_9PHAE) HSP 1 Score: 201 bits (511), Expect = 1.790e-53 Identity = 134/334 (40.12%), Postives = 186/334 (55.69%), Query Frame = 2
Query: 1079 DLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQN------GARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
++ RPG VA RS S G G V+V+ + Y+ A+DL+ R + +PATT+G E P GV+ F + A+++L++ ++PYG HKF+ LA+ L E+ QE++ PEA+ P+ + F D+ P + +VHD+G GE+ DY SG L D G GGAQ+ GA R V VG ED R+ T A A TT E TMA+ L+DVV ++ R ++L++ G WL N +GIAKV + VSLVET K G V+ +N D C GP F+ F+ FSGYKNLA+HDK+ A +EVGRSG F P
Sbjct: 18 NISGRPGEVAFRSTSVGGNGGTVIVIPTSRYEAALDLYSRRHE--FPATTDGVEDPPVPGVVRGGKKGVPQFMRTDKSTAVKALMQAKEPYGSPAHKFIFLASALEKESPAVQEKMVDRLPEARDPQFSHLFVDDSNKPSPLWVVDMVHDTGGGEDTDY-SGRLS-DAKTRAYHDGRVFGGAQSAGSGRRGATRIVEVGLAEDERVRTEA-ADTTHVESTMALPLWDVVAIMGRKDTLFKQGLWLFGNAIGIAKVGSK--VSLVETTPKKSRSG---VFFTVMINNRDYCGTGPFFLTFLVG-CSFSGYKNLAKHDKKAAG-LEVGRSGDFSTP 339
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 9.720e-17 Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 2
Query: 701 LLRHAVETVLTLVGSIDRDANMAGHEGPSSADADDLRHQGEKVIQFACALGFDAVDEASDSEE 889
LLR+ VE VLTL G+I+ D++ AGHEGPS ADAD+LRHQ +KVIQFACALGFDA DE DSEE
Sbjct: 27 LLRYGVEAVLTLAGAIEGDSSRAGHEGPSRADADELRHQEDKVIQFACALGFDAADEPCDSEE 89
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.080e-8 Identity = 47/119 (39.50%), Postives = 56/119 (47.06%), Query Frame = 2
Query: 2351 WHAWFRRTGVSLK--KRESRSRSVARRPHP--------------LPRPTKGKGLFGLTKEGSLVMGVHNSAPGRTTCVSGGTIPVTTKEPPYKVPAFAIAPLRAGLIVTNKVFNETERK 2659
W W R + +R R R V R P P T+ KG FGL EG +V+ VHNS CVS G IPVTT+ PP+ VPAFAI PLRAG ++ N K
Sbjct: 177 WERWLERRRKRYEGFQRGGRGRGVLRTPREGYGGQTPSDTQTPGYPGVTRAKGKFGLD-EGRVVLRVHNSNK-PNVCVSEGAIPVTTRTPPFTVPAFAIGPLRAGKVIIRNQSNANALK 293
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D8LKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS4_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 8.770e-8 Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 2
Query: 2438 PRPTKGKGLFGLTKEGSLVMGVHNSAPGRTTCVSGGTIPVTTKEPPYKVPAFAIAPLRAG-LIVTNKVFNETERKLAKSN 2674
P K KG FGL EG +V+ VHNS CVS G IPVTT+ PP+KVPAFAI P RAG L++ N+ +K K N
Sbjct: 171 PGVIKAKGTFGLD-EGRVVLRVHNSNK-PNVCVSEGAIPVTTRTPPFKVPAFAIGPPRAGKLMLRNQNNANALKKKNKKN 248 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16903.1 >prot_C-linearis_contig93.16903.1 ID=prot_C-linearis_contig93.16903.1|Name=mRNA_C-linearis_contig93.16903.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=445bp MAGHEGPSSADADDLRHQGEKVIQFACALGFDAVDEASDSEEEITTQAAPback to top mRNA from alignment at C-linearis_contig93:245515..251654+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16903.1 ID=mRNA_C-linearis_contig93.16903.1|Name=mRNA_C-linearis_contig93.16903.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6140bp|location=Sequence derived from alignment at C-linearis_contig93:245515..251654+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:245515..251654+ >mRNA_C-linearis_contig93.16903.1 ID=mRNA_C-linearis_contig93.16903.1|Name=mRNA_C-linearis_contig93.16903.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at C-linearis_contig93:245515..251654+ (Chordaria linearis ClinC8C monoicous)back to top |