mRNA_C-linearis_contig93.16903.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5L5E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E5_9PHAE) HSP 1 Score: 370 bits (951), Expect = 4.120e-113 Identity = 201/354 (56.78%), Postives = 251/354 (70.90%), Query Frame = 2 Query: 1013 EWAPTAFSTASAFSTPNTSYVADLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERV----HVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
+W T FST S ST +TS+VADLPRRPGHVAVRSAS +GKGD+V+V+ +AHY AV+L+ L A T+G ES+P GVL PS F +A+ +DAIR++LET+QPY D LHKFLAL++ L +T + Q V F EA+ +H+ F D++GNALPK+G+RV HD G G NVDY + E D +LLTFGGGTIGGAQNGAR+ V + SEED RL TP VAATTV TM +RL D V ARS +L++ G WL++NVVG+A V RR G+SLV T++G G+ WVYL T DN++ CW GPGF++FVTQQ CFSGYKNL HDKEGA++MEVGRSG F P
Sbjct: 82 KWEATIFST-SRISTSDTSFVADLPRRPGHVAVRSASKKGKGDLVMVITEAHYHHAVELYLGPYGL---AATDGIESDPHEGVLTGRKGRPS-FHYASTDDAIRAILETKQPYVDALHKFLALSSFLHWQTTERQANVDAKMEATFTEAELSKHSSLFVDKKGNALPKIGVRVAHDIGGGANVDYSTRGFESDPKSLLTFGGGTIGGAQNGARKLVALDSEEDFRLKTPGVAATTVDHTTMFLRLNDAAVFAARSETLFDKGSWLNKNVVGLAWV-RRRGLSLVRTREGTTRGGEPWVYLVTVIDNWEHCWSGPGFLLFVTQQGCFSGYKNLKEHDKEGARQMEVGRSGDFSTP 429
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7FLR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR6_ECTSI) HSP 1 Score: 341 bits (874), Expect = 6.620e-101 Identity = 190/359 (52.92%), Postives = 244/359 (67.97%), Query Frame = 2 Query: 1016 WAPTAFSTASAFSTPNTS------YVADLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHV----AFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
W PT FST S S P+TS +VA+LPRRPGHVAVRS S++GKGD+V+V+++ Y EAVDL++ + +G ES+P GVL N A S Q+AT EDAI ++LET+QPYGD LHKFLAL++ R +T Q ++ F E + + + F DE GNAL K+G+RV D+G G NVDYG+ E D +LLTF GTIGGAQNGAR+ + + SEED+RL TP VAA TV E+ M VRL D VL ARS +L++ G WL++NVVG+A V R G+SLV TK+G G WV+L T DN++ CW GPGFVVF+T +CF+GYKNL HD++GA +MEVGRSG F P
Sbjct: 64 WTPTVFST-SRVSAPDTSVEAHTSFVAELPRRPGHVAVRSGSSKGKGDLVMVIEKTLYTEAVDLYQGPYGRE---AKDGIESDPHEGVLPDRNGAGS-VQYATEEDAISAILETKQPYGDGLHKFLALSSFFRWQTPAKQRKMDAEMKATFTEGELFQRSSLFIDETGNALSKIGVRVASDTGRGVNVDYGARGFESDPKSLLTFNRGTIGGAQNGARKLLAIDSEEDVRLKTPEVAANTVEEKRMFVRLNDAAVLAARSETLFKKGSWLNKNVVGLAWVQGR-GLSLVRTKEGTTRGGNPWVWLVTVIDNWEYCWSGPGFVVFMTHNWCFAGYKNLKEHDRKGANQMEVGRSGDFSTP 416
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5KU43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU43_9PHAE) HSP 1 Score: 329 bits (843), Expect = 6.390e-98 Identity = 184/351 (52.42%), Postives = 235/351 (66.95%), Query Frame = 2 Query: 1031 FSTASAFSTPNTSYVADLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWP-ATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNG------ARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
F + FST TSYVADLPRR G++AVRSAS +GKG+V +VV++ HYDEAV +++ + D+ A T+G E++PR+GV+ E FQ ATR+DA+R+LLET+QPYGD LHKFLAL +++ ET + Q ++ F +AQ +H+ F DE GNALPK+G++VVHD+G G VDY G D L TFGGGTIGG+QNG +RRTV +GS ED RL P VAATTVTE TM V LYD VVL AR IGPW ENVVG+A V ++ +SLV+T+ G G+ WVY + N++ CW GP F+V VTQQ CF+G NL + DK MEVGRSG P
Sbjct: 9 FVEKATFSTDGTSYVADLPRRSGYLAVRSASIKGKGNVDIVVRRTHYDEAVRIYQ---ESDYGLAVTDGVETKPRLGVVPDEESDDPVFQRATRDDAVRALLETKQPYGDALHKFLALVSMIHWETAEMQRKMEAPFTKAQLSQHSSLFFDEMGNALPKMGLKVVHDTGAGAAVDYDGGVQSGDSKVLWTFGGGTIGGSQNGDSGEEGSRRTVAIGSAEDERLKAPDVAATTVTESTMLVTLYDGVVLAARG-----IGPWFCENVVGVALVGPKKKLSLVKTRGGTTSGGEQWVYYVLAATNWEYCWSGPAFMVLVTQQACFTGKINLWQKDKR-VNHMEVGRSGDLSTP 350
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7G6J6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J6_ECTSI) HSP 1 Score: 321 bits (823), Expect = 1.480e-95 Identity = 172/305 (56.39%), Postives = 218/305 (71.48%), Query Frame = 2 Query: 1148 LVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
+VV +HY +AV++FR R D P T+G E EP GV+ ++ APS FQ A+R DAIR+ L T+QPYGDELHKFLAL +L ET Q ++ AFPEAQ PEHA F++ A+P++ +RVVHDSG G++VD SG ++ D L+TF GG IGGAQ GARRTV++GSEED RLNTP VAATTVT+ TM + LYD VL ARS++LY+ GPWL++NVVG+AKV + G+SLV+TK+G G+ WVYL T N++ CW GP FV VT+ CFSGYKNL +HDK + MEVGRSG F P
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPSKD-APS-FQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQSPEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDR-SGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKT-TRGMEVGRSGDFSTP 301
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7FWV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV7_ECTSI) HSP 1 Score: 321 bits (823), Expect = 4.130e-95 Identity = 172/305 (56.39%), Postives = 218/305 (71.48%), Query Frame = 2 Query: 1148 LVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQNGARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
+VV +HY +AV++FR R D P T+G E EP GV+ ++ APS FQ A+R DAIR+ L T+QPYGDELHKFLAL +L ET Q ++ AFPEAQ PEHA F++ A+P++ +RVVHDSG G++VD SG ++ D L+TF GG IGGAQ GARRTV++GSEED RLNTP VAATTVT+ TM + LYD VL ARS++LY+ GPWL++NVVG+AKV + G+SLV+TK+G G+ WVYL T N++ CW GP FV VT+ CFSGYKNL +HDK + MEVGRSG F P
Sbjct: 1 MVVPASHYRKAVEIFRRRLDYGLPPATDGNEDEPHPGVIPSKD-APS-FQRASRNDAIRATLRTKQPYGDELHKFLALGSLFHWETPAEQTKMEAAFPEAQSPEHAGLFKNANNIAVPRLVVRVVHDSGAGKDVDR-SGRVQADDKVLITFDGGVIGGAQRGARRTVVLGSEEDQRLNTPEVAATTVTDSTMIIPLYDAFVLSARSDTLYQTGPWLNKNVVGLAKVRGQHGLSLVKTKEGSTRGGEPWVYLVTVIGNWEYCWSGPFFVAMVTRWGCFSGYKNLGKHDKT-TRGMEVGRSGDFSTP 301
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5LDF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDF4_9PHAE) HSP 1 Score: 201 bits (511), Expect = 1.790e-53 Identity = 134/334 (40.12%), Postives = 186/334 (55.69%), Query Frame = 2 Query: 1079 DLPRRPGHVAVRSASAQGKGDVVLVVQQAHYDEAVDLFRSRPDLDWPATTNGEESEPRMGVLARENPAPSGFQHATREDAIRSLLETEQPYGDELHKFLALATLLRLETQQAQERVHVAFPEAQRPEHARYFEDEQGNALPKVGIRVVHDSGEGENVDYGSGSLEWDRLALLTFGGGTIGGAQN------GARRTVLVGSEEDMRLNTPAVAATTVTERTMAVRLYDVVVLVARSNSLYEIGPWLSENVVGIAKVPRREGVSLVETKKGKGYYGKIWVYLDTQSDNFDLCWPGPGFVVFVTQQFCFSGYKNLARHDKEGAKRMEVGRSGTFRLP 2062
++ RPG VA RS S G G V+V+ + Y+ A+DL+ R + +PATT+G E P GV+ F + A+++L++ ++PYG HKF+ LA+ L E+ QE++ PEA+ P+ + F D+ P + +VHD+G GE+ DY SG L D G GGAQ+ GA R V VG ED R+ T A A TT E TMA+ L+DVV ++ R ++L++ G WL N +GIAKV + VSLVET K G V+ +N D C GP F+ F+ FSGYKNLA+HDK+ A +EVGRSG F P
Sbjct: 18 NISGRPGEVAFRSTSVGGNGGTVIVIPTSRYEAALDLYSRRHE--FPATTDGVEDPPVPGVVRGGKKGVPQFMRTDKSTAVKALMQAKEPYGSPAHKFIFLASALEKESPAVQEKMVDRLPEARDPQFSHLFVDDSNKPSPLWVVDMVHDTGGGEDTDY-SGRLS-DAKTRAYHDGRVFGGAQSAGSGRRGATRIVEVGLAEDERVRTEA-ADTTHVESTMALPLWDVVAIMGRKDTLFKQGLWLFGNAIGIAKVGSK--VSLVETTPKKSRSG---VFFTVMINNRDYCGTGPFFLTFLVG-CSFSGYKNLAKHDKKAAG-LEVGRSGDFSTP 339
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 9.720e-17 Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 2 Query: 701 LLRHAVETVLTLVGSIDRDANMAGHEGPSSADADDLRHQGEKVIQFACALGFDAVDEASDSEE 889
LLR+ VE VLTL G+I+ D++ AGHEGPS ADAD+LRHQ +KVIQFACALGFDA DE DSEE
Sbjct: 27 LLRYGVEAVLTLAGAIEGDSSRAGHEGPSRADADELRHQEDKVIQFACALGFDAADEPCDSEE 89
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.080e-8 Identity = 47/119 (39.50%), Postives = 56/119 (47.06%), Query Frame = 2 Query: 2351 WHAWFRRTGVSLK--KRESRSRSVARRPHP--------------LPRPTKGKGLFGLTKEGSLVMGVHNSAPGRTTCVSGGTIPVTTKEPPYKVPAFAIAPLRAGLIVTNKVFNETERK 2659
W W R + +R R R V R P P T+ KG FGL EG +V+ VHNS CVS G IPVTT+ PP+ VPAFAI PLRAG ++ N K
Sbjct: 177 WERWLERRRKRYEGFQRGGRGRGVLRTPREGYGGQTPSDTQTPGYPGVTRAKGKFGLD-EGRVVLRVHNSNK-PNVCVSEGAIPVTTRTPPFTVPAFAIGPLRAGKVIIRNQSNANALK 293
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Match: D8LKS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS4_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 8.770e-8 Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 2 Query: 2438 PRPTKGKGLFGLTKEGSLVMGVHNSAPGRTTCVSGGTIPVTTKEPPYKVPAFAIAPLRAG-LIVTNKVFNETERKLAKSN 2674
P K KG FGL EG +V+ VHNS CVS G IPVTT+ PP+KVPAFAI P RAG L++ N+ +K K N
Sbjct: 171 PGVIKAKGTFGLD-EGRVVLRVHNSNK-PNVCVSEGAIPVTTRTPPFKVPAFAIGPPRAGKLMLRNQNNANALKKKNKKN 248 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig93.16903.1 >prot_C-linearis_contig93.16903.1 ID=prot_C-linearis_contig93.16903.1|Name=mRNA_C-linearis_contig93.16903.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=445bp MAGHEGPSSADADDLRHQGEKVIQFACALGFDAVDEASDSEEEITTQAAPback to top mRNA from alignment at C-linearis_contig93:245515..251654+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig93.16903.1 ID=mRNA_C-linearis_contig93.16903.1|Name=mRNA_C-linearis_contig93.16903.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6140bp|location=Sequence derived from alignment at C-linearis_contig93:245515..251654+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig93:245515..251654+ >mRNA_C-linearis_contig93.16903.1 ID=mRNA_C-linearis_contig93.16903.1|Name=mRNA_C-linearis_contig93.16903.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2670bp|location=Sequence derived from alignment at C-linearis_contig93:245515..251654+ (Chordaria linearis ClinC8C monoicous)back to top |