mRNA_C-linearis_contig93.16899.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16899.1
Unique NamemRNA_C-linearis_contig93.16899.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16899.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.700e-10
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:  118 EYAALDAYASVLLYSAIMERAGPVLTCPKPPVQELRNGVPLRLYTRTNSRFVAEGSLVSHASGDTWGSTTLFV 336
            +YA LD+YA VLL+  I  R  P+LT  +P V  L     LRLYT TN+R VAEG++  ++   TWGST L +
Sbjct:  255 KYAGLDSYAGVLLFYRIWARMDPILTECRPDVLSLPANTHLRLYTSTNTRCVAEGTVEEYSQDGTWGSTGLTI 327
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0J2_ECTSI1.700e-1047.953'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:176463..176798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size338
Cds size168
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.632695-UTR-C-linearis_contig93:176462..1766301622930797.632695-UTR-C-linearis_contig93:176462..176630Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 176463..176630 +
1690881255.4050074-UTR-C-linearis_contig93:176462..1766301690881255.4050074-UTR-C-linearis_contig93:176462..176630Chordaria linearis ClinC8C monoicousUTRC-linearis_contig93 176463..176630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.6540887-CDS-C-linearis_contig93:176630..1767981622930797.6540887-CDS-C-linearis_contig93:176630..176798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 176631..176798 +
1690881255.4202552-CDS-C-linearis_contig93:176630..1767981690881255.4202552-CDS-C-linearis_contig93:176630..176798Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 176631..176798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16899.1prot_C-linearis_contig93.16899.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 176631..176798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16899.1

>prot_C-linearis_contig93.16899.1 ID=prot_C-linearis_contig93.16899.1|Name=mRNA_C-linearis_contig93.16899.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=56bp
MERAGPVLTCPKPPVQELRNGVPLRLYTRTNSRFVAEGSLVSHASGDTWG
STTLFV
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mRNA from alignment at C-linearis_contig93:176463..176798+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16899.1 ID=mRNA_C-linearis_contig93.16899.1|Name=mRNA_C-linearis_contig93.16899.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at C-linearis_contig93:176463..176798+ (Chordaria linearis ClinC8C monoicous)
CCGACTAGGTTAACACATGCTCACACAGCTTCTTTAGTGTCTACCTGCCT
CGTGCTCGACCTGAGTTCGCATTTCTTCATGTGTCCACGCCCGTGCTCTT
GATTTGTCGTGTAGTTCGAGTATGCGGCACTGGATGCGTATGCTTCGGTC
CTGCTGTACTCCGCCATCATGGAACGCGCGGGTCCGGTGTTGACGTGCCC
AAAGCCGCCGGTGCAAGAACTGCGCAATGGGGTGCCTTTGCGCCTGTACA
CGAGAACGAACTCCCGTTTCGTTGCGGAAGGGAGTCTCGTGAGTCACGCT
TCAGGCGACACGTGGGGCTCCACAACGTTATTTGTC
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Coding sequence (CDS) from alignment at C-linearis_contig93:176463..176798+

>mRNA_C-linearis_contig93.16899.1 ID=mRNA_C-linearis_contig93.16899.1|Name=mRNA_C-linearis_contig93.16899.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at C-linearis_contig93:176463..176798+ (Chordaria linearis ClinC8C monoicous)
ATGGAACGCGCGGGTCCGGTGTTGACGTGCCCAAAGCCGCCGGTGCAAGA
ACTGCGCAATGGGGTGCCTTTGCGCCTGTACACGAGAACGAACTCCCGTT
TCGTTGCGGAAGGGAGTCTCGTGAGTCACGCTTCAGGCGACACGTGGGGC
TCCACAACGTTATTTGTCATGGAACGCGCGGGTCCGGTGTTGACGTGCCC
AAAGCCGCCGGTGCAAGAACTGCGCAATGGGGTGCCTTTGCGCCTGTACA
CGAGAACGAACTCCCGTTTCGTTGCGGAAGGGAGTCTCGTGAGTCACGCT
TCAGGCGACACGTGGGGCTCCACAACGTTATTTGTC
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