mRNA_C-linearis_contig93.16895.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig93.16895.1
Unique NamemRNA_C-linearis_contig93.16895.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5KM80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM80_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.760e-16
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:  115 NDKVQKFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            +D VQKFCRKVANFHTVY+AGL GAEA   Q+ +KSHR+ APSEFVNP
Sbjct:   80 HDIVQKFCRKVANFHTVYDAGLTGAEAVDAQEKYKSHRRSAPSEFVNP 127
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5KQ48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ48_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.980e-15
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:  118 DKVQKFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            D VQKFCRKVANFH VY+AGL GAEA   Q+  KSHRKPAPSE++NP
Sbjct:   97 DIVQKFCRKVANFHAVYDAGLTGAEAVDAQEKCKSHRKPAPSEYINP 143
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.980e-14
Identity = 53/149 (35.57%), Postives = 67/149 (44.97%), Query Frame = 1 
Query:    1 MTAQTFCDYLTKDVLPEVAATKTAEYDPFKHAPITKI-----KNDKVQKFC-------------------RK---------------------------------------VANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            M ++ F +YL KDVLP+VA TKT +YDPFKHAP+TK        +KV  +                    RK                                       VANF+ VY  GL+GAEA Q++  F SHRKPAPSE++NP
Sbjct:  303 MPSEGFHEYLNKDVLPQVADTKTCDYDPFKHAPVTKTTTETASGEKVVSYSVTVRTARSWLHKLGCEYRDRKSGXVLGDRSHGALLAAQAGVRVPRSQVGPIQVLGPAALTVANFNEVYRDGLQGAEAVQKRDTFNSHRKPAPSEYINP 451
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5JEX5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 5.420e-14
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:  118 DKVQKFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            D VQKFCRKVANFH VY+AGL GAEA + Q+  KSHRKPAPSE++NP
Sbjct:  621 DIVQKFCRKVANFHAVYDAGLTGAEAVEAQEKCKSHRKPAPSEYINP 667
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.490e-13
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:  124 VQKFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            VQKFCR VANF+ VY  GLKGAEA Q++  FKSHRKPAPSE++NP
Sbjct:  519 VQKFCRTVANFNEVYRDGLKGAEAVQKRDTFKSHRKPAPSEYINP 563
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.570e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:  130 KFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            KFCRKVANFH VY+AGL GAEA + Q+  KSHRKPAPSE++NP
Sbjct:  389 KFCRKVANFHAVYDAGLTGAEAVEAQEKCKSHRKPAPSEYINP 431
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.660e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:  124 VQKFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            VQKFCR VANF+ VY+ GL+GAEA Q++  FKSHRKPAPSE++NP
Sbjct:  558 VQKFCRTVANFNEVYSDGLQGAEAVQKRDTFKSHRKPAPSEYINP 602
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5KK29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK29_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.700e-12
Identity = 32/40 (80.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  139 RKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            RKVANFHTVYNAGL+GAEA QE K F SHRKPAPSE++ P
Sbjct:  341 RKVANFHTVYNAGLEGAEAVQEHKKFMSHRKPAPSEYIKP 380
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5JXQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.010e-11
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:  124 VQKFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVN 255
            VQKFCR VANF+ VY  GL+GAEA Q++  F+SHRKPAPSE++N
Sbjct:  422 VQKFCRTVANFNEVYRDGLQGAEAVQKRDTFESHRKPAPSEYIN 465
[Close]
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Match: A0A6H5KMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH6_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 8.050e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  118 DKVQKFCRKVANFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNP 258
            D VQKFCRKVANFH  Y+AGL GA+A    +  KS RKPAPSE++NP
Sbjct:  300 DIVQKFCRKVANFHAAYDAGLTGAKAVDAHEKCKSDRKPAPSEYINP 346
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KM80_9PHAE6.760e-1675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ48_9PHAE3.980e-1574.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM4_9PHAE1.980e-1435.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX5_9PHAE5.420e-1474.47Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS5_9PHAE6.490e-1373.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI8_9PHAE1.570e-1274.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP5_9PHAE1.660e-1271.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK29_9PHAE3.700e-1280.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXQ2_9PHAE5.010e-1168.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMH6_9PHAE8.050e-1165.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:92561..94215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930797.281388-CDS-C-linearis_contig93:92560..926841622930797.281388-CDS-C-linearis_contig93:92560..92684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 92561..92684 +
1690881255.1698704-CDS-C-linearis_contig93:92560..926841690881255.1698704-CDS-C-linearis_contig93:92560..92684Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 92561..92684 +
1622930797.2935727-CDS-C-linearis_contig93:94075..942151622930797.2935727-CDS-C-linearis_contig93:94075..94215Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 94076..94215 +
1690881255.18439-CDS-C-linearis_contig93:94075..942151690881255.18439-CDS-C-linearis_contig93:94075..94215Chordaria linearis ClinC8C monoicousCDSC-linearis_contig93 94076..94215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16895.1prot_C-linearis_contig93.16895.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig93 92561..94215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig93.16895.1

>prot_C-linearis_contig93.16895.1 ID=prot_C-linearis_contig93.16895.1|Name=mRNA_C-linearis_contig93.16895.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=88bp
MTAQTFCDYLTKDVLPEVAATKTAEYDPFKHAPITKIKNDKVQKFCRKVA
NFHTVYNAGLKGAEAAQEQKIFKSHRKPAPSEFVNPE*
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mRNA from alignment at C-linearis_contig93:92561..94215+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig93.16895.1 ID=mRNA_C-linearis_contig93.16895.1|Name=mRNA_C-linearis_contig93.16895.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1655bp|location=Sequence derived from alignment at C-linearis_contig93:92561..94215+ (Chordaria linearis ClinC8C monoicous)
ATGACAGCTCAGACGTTCTGCGACTACCTCACGAAGGACGTCCTGCCAGA
GGTTGCGGCGACCAAGACCGCCGAGTACGACCCATTCAAGCACGCGCCCA
TCACCAAGATCAAGAACGACAAGGGTGAGGTCGTGTCGTACGCGATCACC
GAGCGCACAGCACGATCCTGGCTTCACAAGCTGGGATGCGAGTACCGCGA
CACGAAGACGGGTCTGTACTTCGACGGGCATGACCGCGAGGACGTACTAG
AGTAATTTACCGGGTCGAGACGTATCTGCCCGCCTACTTCGAGCACCGCG
ACTACACGGAGATCTGGATCGATGCCAGCTTGGAGGAGGCGCGATCCTGG
GAGGTGGAGACGCATCCAAGGGACAGGAGGGAGGACGGGCGTGTCTGGGT
TTGCGTACATGCATTCAAGGAGACGCTCTCCGAGCTCCCCACGCACCTAC
AAGCGAGGGTCACTAGCAAGAAAGAGTACCCCGATGGCAGGAAGGCGATT
TTTTGCTACCAGGACGAGTGCATCTACAGGGCCAACGACGGGGAGCGTCA
CGCGTGGTGGCCACCGAACGTGCACGGGCTCAAGAAGAAGGGAGAAGGGC
AGGGCATAATGATTTCCGGCACCATCGTGGGCGACGTCGGATTCGTCGAG
GGGACTCAAGCGGACATCGACAAGGCCCAAGATCTGCGGCGTGAGCGCTG
CCGGATTTCGAGGGAGAAGCACGCAGCCGGTGATCCGACCAGGCCGGAAA
AGTACCGCGACATCGACATGCTCTACTTCGAGGGAGAGGGCGACGACCGC
AAGTTTTCGACGTACTTCAAGTTCGAGTATGGCAAGAACAAGGCGGGGTA
CTGGACGGGGGCGAAGATGATCGAGCACATGGCGGATGTGTTGGATCTCT
TGGCCGTGAAGTTCCCGCGGCACAGGCCAATCTGTTTTTTCGACTGGTCA
TCGTGCCATGATTGCGTTGAGGAGGGGGCACCGAGTGTAGCTAGGATGAA
CGCAGGGTACGGGGGGGTGAGGAAGGGGCAGGAGATAGCTCCTCAGGATG
CGACCACCATACTAGAAGACACGCCCAAACTCAAGAAAGGTGATGTACAG
TTCCTCACGTTTCAGGCCGGGGAGTTCCCATTCTACGAGCCGGGTGCCAC
AGATCACGTAGGGAAGATCAAGGGGCTCAAGCAAGTCTTGTTTGAGAGGG
GGCTTTGGATCCCGGGGATGAGCATGACGGGGGCCAAGAAGGGACAGGCG
GCTAACCCCAAGATGAGCATGCCGGCGGTGTTGCGCGAGCAAAAGGATTT
CGCGAAGGTCGATTCTAGCCTGGAGGTTCTGTTGAAGCGCCATGGAGGGG
TTGCGCTCATGCTTCCCAAGTTCCACTGCGAGTTGAACCCGATCGAGTGT
GTGTGGGGTAGGTCAAAATGGTGGGTCCGTAAAAACTGCAAGTACACTCT
CGCGTGCTTGCGAGAGAACGTTTCCAAGAGCTTCACGGCAGACGACAACT
TGAGCCTTGCAATAGTTCAAAAGTTCTGCAGGAAGGTGGCCAACTTCCAC
ACGGTGTACAACGCAGGGCTCAAGGGCGCCGAGGCAGCACAGGAGCAAAA
GATATTCAAGTCGCACCGCAAGCCGGCCCCATCCGAGTTCGTTAACCCCG
AGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig93:92561..94215+

>mRNA_C-linearis_contig93.16895.1 ID=mRNA_C-linearis_contig93.16895.1|Name=mRNA_C-linearis_contig93.16895.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at C-linearis_contig93:92561..94215+ (Chordaria linearis ClinC8C monoicous)
ATGACAGCTCAGACGTTCTGCGACTACCTCACGAAGGACGTCCTGCCAGA
GGTTGCGGCGACCAAGACCGCCGAGTACGACCCATTCAAGCACGCGCCCA
TCACCAAGATCAAGAACGACAAGGATGACAGCTCAGACGTTCTGCGACTA
CCTCACGAAGGACGTCCTGCCAGAGGTTGCGGCGACCAAGACCGCCGAGT
ACGACCCATTCAAGCACGCGCCCATCACCAAGATCAAGAACGACAAGGTT
CAAAAGTTCTGCAGGAAGGTGGCCAACTTCCACACGGTGTACAACGCAGG
GCTCAAGGGCGCCGAGGCAGCACAGGAGCAAAAGATATTCAAGTCGCACC
GCAAGCCGGCCCCATCCGAGTTCGTTAACCCCGAGTAATTCAAAAGTTCT
GCAGGAAGGTGGCCAACTTCCACACGGTGTACAACGCAGGGCTCAAGGGC
GCCGAGGCAGCACAGGAGCAAAAGATATTCAAGTCGCACCGCAAGCCGGC
CCCATCCGAGTTCGTTAACCCCGAGTAA
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