mRNA_C-linearis_contig92.16891.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16891.1
Unique NamemRNA_C-linearis_contig92.16891.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5JKI8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 2.370e-40
Identity = 66/94 (70.21%), Postives = 83/94 (88.30%), Query Frame = 1
Query:   49 MSRLRIRERVARKRRALVVLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            MSRLRIRER+ RK+RA V+L CR+  + ++ LWF YN+AFIYA+ARL +DDTPT +ARRD +AFFSPQDC+NFLRFTQS++ML+L+LLLIPAFI
Sbjct:   36 MSRLRIRERIERKKRASVMLRCRNLFEVYTDLWFVYNIAFIYAMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFI 129          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5KDJ0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDJ0_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.860e-31
Identity = 52/76 (68.42%), Postives = 68/76 (89.47%), Query Frame = 1
Query:  103 VLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            +L CR+  + ++ +WF YN+AFIYA+ARL +DDTPT +ARRDV+AFFSPQDC+NFLRFTQS++ML+L+LLLIPAFI
Sbjct:    1 MLRCRNLFEVYTDIWFVYNIAFIYAMARLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFI 76          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5K4C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4C9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.550e-30
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 1
Query:  103 VLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            +L CRS  + ++ +WF YN+AFIY +ARL +DDTPT +ARRD +AFFSPQDC+NFLRFTQS++ML+L+LLLIPAFI
Sbjct:    1 MLRCRSLLEVYTDIWFVYNIAFIYTMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFI 76          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5K6L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.530e-30
Identity = 51/76 (67.11%), Postives = 68/76 (89.47%), Query Frame = 1
Query:  103 VLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            +L CR+  + ++ +WF YN+AFI+A+ARL +DDTPT +ARRDV+AFFSPQDC+NFLRFTQS++ML+L+LLLIPAFI
Sbjct:    1 MLRCRNLFEVYTDIWFVYNIAFIFAMARLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFI 76          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5JV22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV22_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 6.810e-28
Identity = 49/66 (74.24%), Postives = 61/66 (92.42%), Query Frame = 1
Query:  133 FSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            ++ LWF YN+AFIYA+ARL +DDTPT +ARRD +AFFSPQDC+NFLRFTQS++ML+L+LLLIPAFI
Sbjct:   10 YTDLWFVYNIAFIYAMARLELDDTPTSIARRDATAFFSPQDCVNFLRFTQSQVMLILDLLLIPAFI 75          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.780e-27
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 1
Query:  103 VLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            +L CR+  + ++ +WF Y +AFIYA+  L +DDTPT +ARRDV+AFFSPQDC+NFLRFTQS++ML+L+LLLIPAFI
Sbjct:    1 MLRCRNLFEVYTDIWFVYKIAFIYAMVCLELDDTPTSIARRDVTAFFSPQDCVNFLRFTQSQVMLMLDLLLIPAFI 76          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.220e-24
Identity = 50/91 (54.95%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   58 LRIRERVARKRRALVVLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            LRIR+R+ARK+RAL+ +  +     ++S+WFA + A IY + RLAIDD PT  ARR V  FFSPQDC+ F+RFT+ +I+L+LELL++PA I
Sbjct:   50 LRIRDRIARKKRALLPMQWQQSYSLYTSMWFASHFAVIYTLGRLAIDDIPTGAARRHVDNFFSPQDCVEFMRFTRDQIVLMLELLMVPAII 140          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5L0K5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K5_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.180e-22
Identity = 46/90 (51.11%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   61 RIRERVARKRRALVVLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            R R+R+ARK+RAL+++  +     ++S+WFA ++A +Y + RLAIDD PT  ARRD   FFSPQDC+  +RFT+ +I+L+LELL++PA I
Sbjct:   33 RARDRIARKKRALLLMQWQQSYSLYTSMWFASHVAVMYTLGRLAIDDIPTGAARRDEDNFFSPQDCVELMRFTRDQIVLMLELLMVPAII 122          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5JLJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLJ2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.250e-22
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1
Query:  103 VLACRSYCDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSE 288
            +L CR+  + ++ +WF YN+AF YA+ARL +DDTPT +ARRDV AFFSPQDC+ FLRFTQS+
Sbjct:    1 MLRCRNLFEVYTDIWFVYNIAFTYAMARLELDDTPTSIARRDVKAFFSPQDCVIFLRFTQSQ 62          
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Match: A0A6H5JK48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK48_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.350e-22
Identity = 41/69 (59.42%), Postives = 55/69 (79.71%), Query Frame = 1
Query:  124 CDQFSSLWFAYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLLLELLLIPAFI 330
            C +++S+WFA  +A IY + RLAIDD PT  ARRDV  FFSPQDC+ F+RFT+ +I+L+LELL++PA I
Sbjct:   66 CSRYTSMWFASYVAVIYTLGRLAIDDIPTGAARRDVDNFFSPQDCVEFMRFTRDQIVLMLELLMVPAII 134          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKI8_9PHAE2.370e-4070.21Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KDJ0_9PHAE3.860e-3168.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K4C9_9PHAE1.550e-3067.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6L3_9PHAE3.530e-3067.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV22_9PHAE6.810e-2874.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRJ1_9PHAE2.780e-2764.47DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JS57_9PHAE7.220e-2454.95DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5L0K5_9PHAE1.180e-2251.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JLJ2_9PHAE1.250e-2262.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK48_9PHAE6.350e-2259.42Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:652684..653218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.9e-22
Seed eggNOG ortholog2880.D7FZ45
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.9817154-CDS-C-linearis_contig92:652683..6527251622930795.9817154-CDS-C-linearis_contig92:652683..652725Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 652684..652725 -
1690881254.6069374-CDS-C-linearis_contig92:652683..6527251690881254.6069374-CDS-C-linearis_contig92:652683..652725Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 652684..652725 -
1622930796.0003858-CDS-C-linearis_contig92:652930..6532181622930796.0003858-CDS-C-linearis_contig92:652930..653218Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 652931..653218 -
1690881254.6244283-CDS-C-linearis_contig92:652930..6532181690881254.6244283-CDS-C-linearis_contig92:652930..653218Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 652931..653218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16891.1prot_C-linearis_contig92.16891.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 652684..653218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16891.1

>prot_C-linearis_contig92.16891.1 ID=prot_C-linearis_contig92.16891.1|Name=mRNA_C-linearis_contig92.16891.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=110bp
RVAGLLASLTTGNRVVMSRLRIRERVARKRRALVVLACRSYCDQFSSLWF
AYNLAFIYAIARLAIDDTPTDLARRDVSAFFSPQDCINFLRFTQSEIMLL
LELLLIPAFI
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mRNA from alignment at C-linearis_contig92:652684..653218-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16891.1 ID=mRNA_C-linearis_contig92.16891.1|Name=mRNA_C-linearis_contig92.16891.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=535bp|location=Sequence derived from alignment at C-linearis_contig92:652684..653218- (Chordaria linearis ClinC8C monoicous)
AGGGTTGCTGGGTTGCTGGCTTCGCTCACAACTGGAAATCGGGTCGTCAT GTCTCGTTTGCGCATTCGCGAAAGGGTAGCGCGAAAACGACGAGCACTAG TCGTGCTGGCGTGCAGGTCCTACTGTGACCAGTTTTCGAGCCTGTGGTTC GCGTACAACCTGGCCTTCATCTATGCCATCGCCCGCCTAGCCATCGACGA CACACCAACCGATCTTGCTCGGAGGGATGTATCTGCATTCTTCAGCCCTC AGGACTGCATCAACTTCCTGCGCTTTACGCAATCAGAGGTGCGAAGAAAA CATGACTGCAATCTCAACTCGCGTCAACCACAAAATAGTTGCTCTCCTCT CTGTGTGGGCCCAGCGGGCTGTTTTTAGTGCCGGAGCTTGTACGTACTCA AAATATCTCTCGAATCATAGGAGTAGAGCTGGGAAAAGGGCAGAGGACAT ACATATCTTTATTTTCTTTGTATCTGCGAACGTGATGCGACAGATCATGC TGCTGTTGGAGCTGCTCCTGATTCCGGCGTTCATC
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Coding sequence (CDS) from alignment at C-linearis_contig92:652684..653218-

>mRNA_C-linearis_contig92.16891.1 ID=mRNA_C-linearis_contig92.16891.1|Name=mRNA_C-linearis_contig92.16891.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at C-linearis_contig92:652684..653218- (Chordaria linearis ClinC8C monoicous)
AGGGTTGCTGGGTTGCTGGCTTCGCTCACAACTGGAAATCGGGTCGTCAT
GTCTCGTTTGCGCATTCGCGAAAGGGTAGCGCGAAAACGACGAGCACTAG
TCGTGCTGGCGTGCAGGTCCTACTGTGACCAGTTTTCGAGCCTGTGGTTC
GCGTACAACCTGGCCTTCATCTATGCCATCGCCCGCCTAGCCATCGACGA
CACACCAACCGATCTTGCTCGGAGGGATGTATCTGCATTCTTCAGCCCTC
AGGACTGCATCAACTTCCTGCGCTTTACGCAATCAGAGAGGGTTGCTGGG
TTGCTGGCTTCGCTCACAACTGGAAATCGGGTCGTCATGTCTCGTTTGCG
CATTCGCGAAAGGGTAGCGCGAAAACGACGAGCACTAGTCGTGCTGGCGT
GCAGGTCCTACTGTGACCAGTTTTCGAGCCTGTGGTTCGCGTACAACCTG
GCCTTCATCTATGCCATCGCCCGCCTAGCCATCGACGACACACCAACCGA
TCTTGCTCGGAGGGATGTATCTGCATTCTTCAGCCCTCAGGACTGCATCA
ACTTCCTGCGCTTTACGCAATCAGAGATCATGCTGCTGTTGGAGCTGCTC
CTGATTCCGGCGTTCATCATCATGCTGCTGTTGGAGCTGCTCCTGATTCC
GGCGTTCATC
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