mRNA_C-linearis_contig92.16890.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16890.1
Unique NamemRNA_C-linearis_contig92.16890.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5JIR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR3_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.660e-40
Identity = 71/102 (69.61%), Postives = 83/102 (81.37%), Query Frame = 1
Query:   10 FPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDN--KTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGRGE 309
            FP +TE  + +L  + D+Y++AAS VDT YDLWSFW DN  K+ L HWY VAKDI L+QPSSAFMERVFSILRACMD RQE SFSDR+AA+ALLKY RGRG+
Sbjct:  656 FPFVTENDVARLKDQMDDYNIAASGVDTGYDLWSFWHDNRHKSSLCHWYGVAKDIVLLQPSSAFMERVFSILRACMDARQEKSFSDRVAASALLKYNRGRGK 757          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5K4E0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4E0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.400e-36
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 1
Query:   10 FPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGR 303
            FP I+EE + KL+ EKD+Y++AA   D DYD W FW+D+K +LP W+ V  DIAL+QPSSAFMERVFS + +C+D  Q S  SDRI AAAL+KY RGR
Sbjct:   28 FPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVHSCLDSSQNSCLSDRIMAAALIKYNRGR 125          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5KSI8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI8_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.090e-35
Identity = 62/96 (64.58%), Postives = 74/96 (77.08%), Query Frame = 1
Query:   10 FPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKR 297
            FP +T  ++ +LV EKD Y  AA+  D+  DLW+FW DN+  LP WYNVAKD+ALIQPSSAFMERVFS+LRACMD+RQE   SDRI A+ LLKY R
Sbjct:  413 FPFVTTAMVHELVVEKDLYSTAAAGTDSGCDLWAFWHDNRPELPAWYNVAKDVALIQPSSAFMERVFSLLRACMDERQEQCLSDRITASTLLKYNR 508          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5JZH8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH8_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 3.000e-34
Identity = 58/102 (56.86%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 LDPFPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGRG 306
            L  FP + ++++  L+ EK+++++AA+D DTDYD  +FW DNK  LP W+ +  D+ L+QPSSAFMERVFSILR C  +RQES +SDRI A+ALLKY RGRG
Sbjct:  291 LSVFPFVDDDMMDGLLKEKNDFYVAATDTDTDYDNMTFWSDNKKNLPTWHELVLDVVLLQPSSAFMERVFSILRCCFSERQESVYSDRICASALLKYSRGRG 392          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5JW81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW81_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.960e-33
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   13 PLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKY 291
            P +T  V+  LV E D Y++AA++ D   DLW+FW DN+ +L  WYNVAKD+ALIQPSSAFMERVFS+LRAC+D RQE    DRI AAALLKY
Sbjct:  305 PFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYNVAKDVALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKY 397          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5KPF8_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF8_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.510e-33
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   13 PLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGRGE 309
            P +T  V+  LV E D Y++AA++ D   DLW+FW DN+ +L  WY VAKDIALIQPSSAFMERVFS+LRAC+D RQE    DRI AAALLKY   R +
Sbjct:   56 PFVTPTVVAALVEEMDAYNVAAAETDAGCDLWAFWHDNRLKLSAWYKVAKDIALIQPSSAFMERVFSVLRACVDDRQEHCLLDRIEAAALLKYNSRRAD 154          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5KCX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.270e-32
Identity = 54/103 (52.43%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 LDPFPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGRGE 309
            L   P +  +++  L+ EK++Y++AASD D +Y   +FW+DN+ RLP W+ +  D+AL+QPSSAFMERVFSIL  C ++RQE  +SDRI A+ALLKY RGR +
Sbjct:   55 LKVLPFVKSKMVKGLLKEKEDYYMAASDTDIEYGHMAFWKDNEKRLPTWHALVLDVALLQPSSAFMERVFSILPCCFNERQEHVYSDRICASALLKYNRGRAQ 157          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5JEX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 5.260e-32
Identity = 52/103 (50.49%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 LDPFPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGRGE 309
            L   P + ++++  L+ EK+++++AASD + +Y   +FW DNK +LP W+ +  D+AL+QPSSAFMERVFSILR C ++RQE  +SDRI A+ LLKY RGR +
Sbjct:   55 LKVLPFVKKKMVRGLLKEKEDFYMAASDTEAEYGHMAFWNDNKKKLPTWHALVLDVALLQPSSAFMERVFSILRCCFNERQEHVYSDRICASVLLKYNRGRAQ 157          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5L6R8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.670e-31
Identity = 58/98 (59.18%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   10 FPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGR 303
            FP I+EE + KL+ EKD+Y++AA   D DYD W FW+D+K +LP W+ V  DIAL+QPSSAFMERVFS +R+C+D  Q S  SDRI AA L+KY  GR
Sbjct:  431 FPFISEEQVDKLLTEKDDYYVAARVTDRDYDFWQFWQDHKEKLPTWFAVVLDIALVQPSSAFMERVFSTVRSCLDSSQNSCLSDRIMAA-LIKYNGGR 527          
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Match: A0A6H5JCP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCP4_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 2.380e-29
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 LDPFPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWYNVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRGR 303
            L   P +  +++  L  EK+ Y +AASD D +Y    FW DNKT+LP W+ +  D+A +QPSSAFMER+FSILR C ++RQ+S +SDRI A+A LKY RGR
Sbjct:  273 LKVLPFVKSKMVRGLFKEKENYFMAASDTDAEYGHMGFWNDNKTKLPTWHALMLDVAFLQPSSAFMERLFSILRCCFNERQQSVYSDRICASAQLKYNRGR 373          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIR3_9PHAE3.660e-4069.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4E0_9PHAE1.400e-3660.20Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KSI8_9PHAE4.090e-3564.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZH8_9PHAE3.000e-3456.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW81_9PHAE1.960e-3363.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPF8_9PHAE2.510e-3360.61Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KCX4_9PHAE1.270e-3252.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEX4_9PHAE5.260e-3250.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R8_9PHAE4.670e-3159.18Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JCP4_9PHAE2.380e-2952.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:644179..644490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.9326258-CDS-C-linearis_contig92:644178..6444901622930795.9326258-CDS-C-linearis_contig92:644178..644490Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 644179..644490 +
1690881254.593099-CDS-C-linearis_contig92:644178..6444901690881254.593099-CDS-C-linearis_contig92:644178..644490Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 644179..644490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16890.1prot_C-linearis_contig92.16890.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 644179..644490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16890.1

>prot_C-linearis_contig92.16890.1 ID=prot_C-linearis_contig92.16890.1|Name=mRNA_C-linearis_contig92.16890.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=104bp
LDPFPLITEEVITKLVGEKDEYHLAASDVDTDYDLWSFWRDNKTRLPHWY
NVAKDIALIQPSSAFMERVFSILRACMDQRQESSFSDRIAAAALLKYKRG
RGE*
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mRNA from alignment at C-linearis_contig92:644179..644490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16890.1 ID=mRNA_C-linearis_contig92.16890.1|Name=mRNA_C-linearis_contig92.16890.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at C-linearis_contig92:644179..644490+ (Chordaria linearis ClinC8C monoicous)
CTGGACCCCTTTCCGCTCATCACGGAAGAGGTCATCACGAAGCTAGTGGG AGAAAAGGACGAGTACCACCTCGCCGCGTCCGACGTTGATACCGACTACG ACTTGTGGAGTTTCTGGCGTGACAATAAGACTAGGCTTCCTCACTGGTAC AACGTTGCCAAGGATATCGCATTGATTCAGCCATCCTCTGCCTTCATGGA GCGAGTATTTTCTATTCTGCGTGCGTGTATGGACCAGAGGCAGGAGTCGA GCTTCAGCGATCGCATTGCCGCAGCTGCCCTTCTCAAGTACAAGAGAGGG CGCGGAGAGTAG
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Coding sequence (CDS) from alignment at C-linearis_contig92:644179..644490+

>mRNA_C-linearis_contig92.16890.1 ID=mRNA_C-linearis_contig92.16890.1|Name=mRNA_C-linearis_contig92.16890.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at C-linearis_contig92:644179..644490+ (Chordaria linearis ClinC8C monoicous)
CTGGACCCCTTTCCGCTCATCACGGAAGAGGTCATCACGAAGCTAGTGGG
AGAAAAGGACGAGTACCACCTCGCCGCGTCCGACGTTGATACCGACTACG
ACTTGTGGAGTTTCTGGCGTGACAATAAGACTAGGCTTCCTCACTGGTAC
AACGTTGCCAAGGATATCGCATTGATTCAGCCATCCTCTGCCTTCATGGA
GCGAGTATTTTCTATTCTGCGTGCGTGTATGGACCAGAGGCAGGAGTCGA
GCTTCAGCGATCGCATTGCCGCAGCTGCCCTTCTCAAGTACAAGAGAGGG
CGCGGAGAGTAGCTGGACCCCTTTCCGCTCATCACGGAAGAGGTCATCAC
GAAGCTAGTGGGAGAAAAGGACGAGTACCACCTCGCCGCGTCCGACGTTG
ATACCGACTACGACTTGTGGAGTTTCTGGCGTGACAATAAGACTAGGCTT
CCTCACTGGTACAACGTTGCCAAGGATATCGCATTGATTCAGCCATCCTC
TGCCTTCATGGAGCGAGTATTTTCTATTCTGCGTGCGTGTATGGACCAGA
GGCAGGAGTCGAGCTTCAGCGATCGCATTGCCGCAGCTGCCCTTCTCAAG
TACAAGAGAGGGCGCGGAGAGTAG
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