mRNA_C-linearis_contig92.16885.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16885.1
Unique NamemRNA_C-linearis_contig92.16885.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig92.16885.1 vs. uniprot
Match: A0A6H5K1N6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N6_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.420e-21
Identity = 45/110 (40.91%), Postives = 73/110 (66.36%), Query Frame = 1 
Query:    4 LDFNAKVSQTFTNTRKKMEEGLKGPAALDFLLSALSRVVSNASPNSVVFELQNFTVPGGTKYEDYLSKLQGLVNSAQTLGHATPQDSTLQFAVWESVGDQFGLLTASILK 333
            LD  AK++ +F+ TR++++ G+ G  AL+FL+  L+R +S A+P  VVF LQN  V  GT + +Y++ L+ LV +A ++GH + QD+ LQ AV +SV DQ+  +   + K
Sbjct:  538 LDLKAKITSSFSQTRQQLDNGMAGREALNFLVRVLTRTLSMATPQHVVFALQNLEVDAGTPFSEYMNTLRALVQNAMSVGHESAQDNVLQLAVRDSVCDQYSNIAVDVFK 647
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1N6_9PHAE1.420e-2140.91CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:566755..567089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.8825154-CDS-C-linearis_contig92:566754..5670871622930795.8825154-CDS-C-linearis_contig92:566754..567087Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 566755..567087 +
1690881254.5780826-CDS-C-linearis_contig92:566754..5670871690881254.5780826-CDS-C-linearis_contig92:566754..567087Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 566755..567087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16885.1prot_C-linearis_contig92.16885.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 566755..567087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16885.1

>prot_C-linearis_contig92.16885.1 ID=prot_C-linearis_contig92.16885.1|Name=mRNA_C-linearis_contig92.16885.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=111bp
ALDFNAKVSQTFTNTRKKMEEGLKGPAALDFLLSALSRVVSNASPNSVVF
ELQNFTVPGGTKYEDYLSKLQGLVNSAQTLGHATPQDSTLQFAVWESVGD
QFGLLTASILK
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mRNA from alignment at C-linearis_contig92:566755..567089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16885.1 ID=mRNA_C-linearis_contig92.16885.1|Name=mRNA_C-linearis_contig92.16885.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=335bp|location=Sequence derived from alignment at C-linearis_contig92:566755..567089+ (Chordaria linearis ClinC8C monoicous)
GCGCTAGACTTCAACGCCAAGGTGTCGCAGACGTTCACGAACACCCGGAA
GAAGATGGAGGAGGGACTAAAAGGACCAGCAGCGTTGGACTTTTTGCTTT
CTGCACTTAGTAGGGTTGTTAGCAACGCGTCGCCCAATTCGGTAGTGTTT
GAACTTCAAAATTTTACGGTGCCGGGGGGTACCAAATACGAAGACTACTT
GAGCAAATTGCAGGGGCTGGTGAACAGCGCTCAGACGTTGGGGCATGCTA
CGCCTCAAGACAGTACTCTGCAGTTTGCGGTGTGGGAGAGTGTGGGGGAT
CAGTTTGGACTTCTCACCGCATCGATTCTAAAAAA
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Coding sequence (CDS) from alignment at C-linearis_contig92:566755..567089+

>mRNA_C-linearis_contig92.16885.1 ID=mRNA_C-linearis_contig92.16885.1|Name=mRNA_C-linearis_contig92.16885.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at C-linearis_contig92:566755..567089+ (Chordaria linearis ClinC8C monoicous)
GCGCTAGACTTCAACGCCAAGGTGTCGCAGACGTTCACGAACACCCGGAA
GAAGATGGAGGAGGGACTAAAAGGACCAGCAGCGTTGGACTTTTTGCTTT
CTGCACTTAGTAGGGTTGTTAGCAACGCGTCGCCCAATTCGGTAGTGTTT
GAACTTCAAAATTTTACGGTGCCGGGGGGTACCAAATACGAAGACTACTT
GAGCAAATTGCAGGGGCTGGTGAACAGCGCTCAGACGTTGGGGCATGCTA
CGCCTCAAGACAGTACTCTGCAGTTTGCGGTGTGGGAGAGTGTGGGGGAT
CAGTTTGGACTTCTCACCGCATCGATTCTAAAAGCGCTAGACTTCAACGC
CAAGGTGTCGCAGACGTTCACGAACACCCGGAAGAAGATGGAGGAGGGAC
TAAAAGGACCAGCAGCGTTGGACTTTTTGCTTTCTGCACTTAGTAGGGTT
GTTAGCAACGCGTCGCCCAATTCGGTAGTGTTTGAACTTCAAAATTTTAC
GGTGCCGGGGGGTACCAAATACGAAGACTACTTGAGCAAATTGCAGGGGC
TGGTGAACAGCGCTCAGACGTTGGGGCATGCTACGCCTCAAGACAGTACT
CTGCAGTTTGCGGTGTGGGAGAGTGTGGGGGATCAGTTTGGACTTCTCAC
CGCATCGATTCTAAAA
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