mRNA_C-linearis_contig92.16884.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16884.1
Unique NamemRNA_C-linearis_contig92.16884.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:565336..565723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.934478-CDS-C-linearis_contig92:565335..5656921622930790.934478-CDS-C-linearis_contig92:565335..565692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 565336..565692 +
1690881251.9880185-CDS-C-linearis_contig92:565335..5656921690881251.9880185-CDS-C-linearis_contig92:565335..565692Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 565336..565692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.948879-UTR-C-linearis_contig92:565692..5657231622930790.948879-UTR-C-linearis_contig92:565692..565723Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 565693..565723 +
1690881252.009127-UTR-C-linearis_contig92:565692..5657231690881252.009127-UTR-C-linearis_contig92:565692..565723Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 565693..565723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16884.1prot_C-linearis_contig92.16884.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 565336..565692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16884.1

>prot_C-linearis_contig92.16884.1 ID=prot_C-linearis_contig92.16884.1|Name=mRNA_C-linearis_contig92.16884.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=119bp
AHTDLIGLKTAEAEADKTVIKTRGFFETASKVYRQVAEGLGVAVRPVPLT
PPQLEDRDGATRKAGGRRHQSARCSRGVCNPQKGSCGQSVQGNADVPGHG
KAIPLAWPRGVSREGQGG*
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mRNA from alignment at C-linearis_contig92:565336..565723+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16884.1 ID=mRNA_C-linearis_contig92.16884.1|Name=mRNA_C-linearis_contig92.16884.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=388bp|location=Sequence derived from alignment at C-linearis_contig92:565336..565723+ (Chordaria linearis ClinC8C monoicous)
GCTCACACCGACCTAATAGGCCTGAAAACAGCCGAAGCGGAGGCAGACAA
AACCGTGATAAAGACGCGGGGGTTCTTCGAGACCGCATCAAAAGTGTACA
GACAGGTCGCGGAGGGTCTGGGAGTTGCTGTCCGTCCGGTCCCTCTCACA
CCTCCTCAATTAGAGGACAGGGATGGTGCGACGAGAAAGGCAGGGGGTAG
GCGGCACCAAAGCGCCCGCTGCAGCAGGGGGGTTTGTAATCCCCAAAAAG
GAAGTTGTGGACAAAGTGTCCAAGGAAATGCAGATGTTCCTGGACATGGA
AAAGCAATTCCCCTCGCTTGGCCCCGCGGAGTTAGCCGCGAAGGCCAAGG
AGGCTAAGAAGCAAGAAAACGAGAAAGCCAAGAAATTG
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Coding sequence (CDS) from alignment at C-linearis_contig92:565336..565723+

>mRNA_C-linearis_contig92.16884.1 ID=mRNA_C-linearis_contig92.16884.1|Name=mRNA_C-linearis_contig92.16884.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at C-linearis_contig92:565336..565723+ (Chordaria linearis ClinC8C monoicous)
GCTCACACCGACCTAATAGGCCTGAAAACAGCCGAAGCGGAGGCAGACAA
AACCGTGATAAAGACGCGGGGGTTCTTCGAGACCGCATCAAAAGTGTACA
GACAGGTCGCGGAGGGTCTGGGAGTTGCTGTCCGTCCGGTCCCTCTCACA
CCTCCTCAATTAGAGGACAGGGATGGTGCGACGAGAAAGGCAGGGGGTAG
GCGGCACCAAAGCGCCCGCTGCAGCAGGGGGGTTTGTAATCCCCAAAAAG
GAAGTTGTGGACAAAGTGTCCAAGGAAATGCAGATGTTCCTGGACATGGA
AAAGCAATTCCCCTCGCTTGGCCCCGCGGAGTTAGCCGCGAAGGCCAAGG
AGGCTAAGCTCACACCGACCTAATAGGCCTGAAAACAGCCGAAGCGGAGG
CAGACAAAACCGTGATAAAGACGCGGGGGTTCTTCGAGACCGCATCAAAA
GTGTACAGACAGGTCGCGGAGGGTCTGGGAGTTGCTGTCCGTCCGGTCCC
TCTCACACCTCCTCAATTAGAGGACAGGGATGGTGCGACGAGAAAGGCAG
GGGGTAGGCGGCACCAAAGCGCCCGCTGCAGCAGGGGGGTTTGTAATCCC
CAAAAAGGAAGTTGTGGACAAAGTGTCCAAGGAAATGCAGATGTTCCTGG
ACATGGAAAAGCAATTCCCCTCGCTTGGCCCCGCGGAGTTAGCCGCGAAG
GCCAAGGAGGCTAA
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