mRNA_C-linearis_contig92.16881.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16881.1
Unique NamemRNA_C-linearis_contig92.16881.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:411514..411968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.8497097-UTR-C-linearis_contig92:411513..4116561622930790.8497097-UTR-C-linearis_contig92:411513..411656Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 411514..411656 +
1690881251.9609282-UTR-C-linearis_contig92:411513..4116561690881251.9609282-UTR-C-linearis_contig92:411513..411656Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 411514..411656 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930790.8712778-CDS-C-linearis_contig92:411656..4119681622930790.8712778-CDS-C-linearis_contig92:411656..411968Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 411657..411968 +
1690881251.9714797-CDS-C-linearis_contig92:411656..4119681690881251.9714797-CDS-C-linearis_contig92:411656..411968Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 411657..411968 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16881.1prot_C-linearis_contig92.16881.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 411657..411968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16881.1

>prot_C-linearis_contig92.16881.1 ID=prot_C-linearis_contig92.16881.1|Name=mRNA_C-linearis_contig92.16881.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=104bp
MCLLLCWHEQHDWIGLNRKSTVCPLTVYCILSCTQHQHAHILFPPSFSFR
TSLLNSTATVRLPFGGTYVGEVGPERYQRFTFLVVTRLPMHISERRTLCL
VRPP
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mRNA from alignment at C-linearis_contig92:411514..411968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16881.1 ID=mRNA_C-linearis_contig92.16881.1|Name=mRNA_C-linearis_contig92.16881.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at C-linearis_contig92:411514..411968+ (Chordaria linearis ClinC8C monoicous)
CAAGTAGAATAGCAGTAGACAACAGCGATGGGTCGAAACGTCTTACGCGT
AGAGGGGCAGTCTACAAGCCGCTCATTCCACCACGTTAAGAAATATGTTT
TGGAGTACAGTGCAGACAGTAGTAGGATGTAGATATCTGAGCAATGTGCT
TGCTGCTCTGTTGGCATGAACAACACGATTGGATTGGATTGAACAGGAAG
TCCACCGTCTGTCCACTGACCGTTTATTGTATTTTGTCGTGTACACAGCA
TCAGCACGCCCACATTCTATTCCCCCCCTCCTTCTCCTTCAGGACCAGCC
TGCTCAATTCGACTGCTACCGTTCGTTTGCCTTTTGGTGGCACGTACGTC
GGAGAGGTTGGACCGGAGCGCTATCAACGTTTTACGTTCCTAGTTGTTAC
ACGTCTCCCAATGCACATTTCTGAACGGCGTACCTTGTGTCTTGTCAGGC
CACCG
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Coding sequence (CDS) from alignment at C-linearis_contig92:411514..411968+

>mRNA_C-linearis_contig92.16881.1 ID=mRNA_C-linearis_contig92.16881.1|Name=mRNA_C-linearis_contig92.16881.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at C-linearis_contig92:411514..411968+ (Chordaria linearis ClinC8C monoicous)
ATGTGCTTGCTGCTCTGTTGGCATGAACAACACGATTGGATTGGATTGAA
CAGGAAGTCCACCGTCTGTCCACTGACCGTTTATTGTATTTTGTCGTGTA
CACAGCATCAGCACGCCCACATTCTATTCCCCCCCTCCTTCTCCTTCAGG
ACCAGCCTGCTCAATTCGACTGCTACCGTTCGTTTGCCTTTTGGTGGCAC
GTACGTCGGAGAGGTTGGACCGGAGCGCTATCAACGTTTTACGTTCCTAG
TTGTTACACGTCTCCCAATGCACATTTCTGAACGGCGTACCTTGTGTCTT
GTCAGGCCACCGATGTGCTTGCTGCTCTGTTGGCATGAACAACACGATTG
GATTGGATTGAACAGGAAGTCCACCGTCTGTCCACTGACCGTTTATTGTA
TTTTGTCGTGTACACAGCATCAGCACGCCCACATTCTATTCCCCCCCTCC
TTCTCCTTCAGGACCAGCCTGCTCAATTCGACTGCTACCGTTCGTTTGCC
TTTTGGTGGCACGTACGTCGGAGAGGTTGGACCGGAGCGCTATCAACGTT
TTACGTTCCTAGTTGTTACACGTCTCCCAATGCACATTTCTGAACGGCGT
ACCTTGTGTCTTGTCAGGCCACCG
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