mRNA_C-linearis_contig92.16880.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16880.1
Unique NamemRNA_C-linearis_contig92.16880.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: D7FYN8_ECTSI (AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYN8_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 2.330e-89
Identity = 151/266 (56.77%), Postives = 166/266 (62.41%), Query Frame = 1 
Query:  145 MAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGGXXXXXXXXXXXXXXXXXXXXXXXXARPMSLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGAAVAAVQALGSSFGGXXXXXXXXXXQGEQCPQCGASFGDVGALVAHVEASHSEERQGQGQG 942
            M EFT +G+HC AENCNQQDFLPF+CDCC+ GTFCLSHRSY AH C +SGNKDFRALVCPLCKKTVRF G QDPN+QWDLHTRTDC P +YK+ K +KKRCAA SCR  LGPTNTQRCA CGKETCLTHRFPDSH CS                          +RPMSLRE                              R      A QA   SFGG          Q EQCPQCGA+FGD+G+LVAHVEA HSE +Q +  G
Sbjct:    1 MPEFTGVGKHCGAENCNQQDFLPFECDCCN-GTFCLSHRSYAAHSCAASGNKDFRALVCPLCKKTVRFNGGQDPNQQWDLHTRTDCNPEDYKRAKQTKKRCAAASCRVVLGPTNTQRCASCGKETCLTHRFPDSHNCSASSRGDARGSAAAAAARRMAAQANQ-SRPMSLREKAAQNRAAASSRRDADANTARATAD-----RRRRENPAAQAR--SFGGSGG-------QSEQCPQCGATFGDIGSLVAHVEAFHSEGQQFRAHG 250
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: A0A836C9G4_9STRA (AN1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9G4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.860e-45
Identity = 76/140 (54.29%), Postives = 95/140 (67.86%), Query Frame = 1 
Query:  145 MAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGG 564
            MAEFTEIG+ C+A  CN +DFLPF CDCC    FCL+HRSY +H C  SG K+  A+VCPLCK T+R + +QD N +W+ H RT C P   K  K ++KRC A  CRE LG +N+  CA+C    CLTHRF +SH C+ G
Sbjct:    1 MAEFTEIGQRCSAPLCNLKDFLPFDCDCCQQ-VFCLNHRSYASHECPLSGTKNMTAIVCPLCKSTIRLSDAQDANAEWERHARTSCSPE--KAAKKARKRCNADGCREVLGLSNSHTCAQCHAAVCLTHRFAESHNCARG 137
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: A0A485L9P1_9STRA (Aste57867_18181 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9P1_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.420e-42
Identity = 69/132 (52.27%), Postives = 88/132 (66.67%), Query Frame = 1 
Query:  160 EIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHIC 555
            +IG HC+   CNQ+DFLPF CDCC+ G FCL HR+Y AH CT++G+KD RA+ CPLC+ T+     QD N  +D HTRT+C P  Y + K +K RC A +CRE L  +NT +C  C K+ CL HRF   H C
Sbjct:    4 DIGEHCSKPGCNQKDFLPFACDCCE-GVFCLEHRTYTAHACTNAGSKDSRAITCPLCRATIPLTNDQDVNHVFDQHTRTNCNPDKYNEKKKAKARCEAENCREVLTASNTVQCNACRKKVCLKHRFESDHQC 134
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: A0A1V9YYI5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYI5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.420e-41
Identity = 68/133 (51.13%), Postives = 88/133 (66.17%), Query Frame = 1 
Query:  160 EIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICS 558
            +IG+HC+   CNQQDFLPF+CDCC  G FCL HR+Y  H C  +G KD RA+ CPLC+ T+   G+ D N  W+ H R DC P  Y++NK +K RCAA +CRE L  +N+  C+ C K+ CL HRF   H C+
Sbjct:    2 DIGKHCSKPGCNQQDFLPFECDCCH-GVFCLEHRTYEDHECVHAGAKDSRAITCPLCRGTIPLTGNMDVNIVWENHARNDCKPEKYQENKKAKVRCAAETCREILTASNSVVCSTCHKKVCLRHRFETDHQCT 133
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: UPI001BF56647 (Uncharacterized protein n=5 Tax=Juglandaceae TaxID=16714 RepID=UPI001BF56647)

HSP 1 Score: 152 bits (384), Expect = 1.550e-38
Identity = 88/259 (33.98%), Postives = 112/259 (43.24%), Query Frame = 1 
Query:  139 LGMAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGGXXXXXXXXXXXXXXXXXXXXXXXXARPMSLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGAAVAAV-QALGSSFGGXXXXXXXXXXQGEQCPQCGASFGDVGALVAHVEASH 912
            +G  EF ++G+HC+ ++C Q DFLPF CD C    FCL HRSY+ H C  +  +D   ++CPLC K VR    +DPN  W+ H  T+C P NY+K    KK+C  P CRE L  +NT +C  C  + CL HRF   H CSG                           P S                                 +   A   + Q+  SS  G            E+CPQCGA F  V ALV HVE  H
Sbjct:    1 MGTPEFPDLGKHCSVDDCKQIDFLPFTCDRCRQ-VFCLEHRSYIKHSCPKADKQDVTVVICPLCAKGVRLIPQEDPNISWETHVNTECDPSNYEKV-TKKKKCPVPGCREALTFSNTIKCRDCLVDHCLRHRFGPDHKCSGPKKSEAGFPFMGLLSRSRTENSKPNRAPTSSSSKWTSKFLNAASTVRASAEAGMAKLSTEISQKWQIAKDGIGQSSNSSRVGGIGQ--------EECPQCGAKFSSVTALVEHVEKVH 249
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: D8U802_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U802_VOLCA)

HSP 1 Score: 150 bits (380), Expect = 2.440e-38
Identity = 68/132 (51.52%), Postives = 83/132 (62.88%), Query Frame = 1 
Query:  160 EIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHIC 555
            EIG HC+ E+C Q DFLPFKCDCC+  TFCL HRSYVAH C ++G K+   +VCP+C K +R    QDP+E +D+H RTDC P NY +    K RC    C+E L   N  RC  C +  CL HR P  H C
Sbjct:    1 EIGDHCSVEDCGQIDFLPFKCDCCNR-TFCLEHRSYVAHSCPNAGAKETTVIVCPICAKGMRLKPGQDPSEAFDVHQRTDCDPANYDRVH-KKPRCPVSGCKEKLTTINAYRCKHCSQRVCLRHRDPGDHKC 130
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: A0A1S3V1R0_VIGRR (zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 n=7 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3V1R0_VIGRR)

HSP 1 Score: 149 bits (377), Expect = 1.250e-37
Identity = 92/269 (34.20%), Postives = 113/269 (42.01%), Query Frame = 1 
Query:  139 LGMAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGGXXXXXXXXXXXXXXXXXXXXXXXX-ARPMSLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGAAVAAVQALGSSFGGXXXXXXXXXXQGEQCPQCGASFGDVGALVAHVEASHSEERQGQGQG 942
            +G  EF ++G+HC+  +C Q DFLPF CD C    +CL HR Y+ H C  +  +D   +VCPLC K VR    QD N  W+ H  TDC P NY+K    KK+C    CRE LG +NT +C  C  + CL HRF   H C G                          +   S R                               +A   V A Q+ G               Q EQCPQCGA F  V ALV HV+  H  ER G   G
Sbjct:    1 MGTPEFPDLGKHCSVSDCKQIDFLPFTCDRCHQ-VYCLEHRGYIKHQCPKADKQDVTVVVCPLCAKGVRLVPDQDANITWENHVNTDCDPSNYEKV-TKKKKCPVQGCREMLGFSNTIKCRDCMVDHCLKHRFGPDHKCPGPRKMETNFSFRNLLNVSKKQESKPQPSSSASSRWSTGFLNAVSNIRSSAEAGVSKLSEVNQGWWKASGGVGASQSSG---------------QVEQCPQCGAKFSSVTALVDHVQKVH--ERSGNRSG 250
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: A0A218W448_PUNGR (zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like n=1 Tax=Punica granatum TaxID=22663 RepID=A0A218W448_PUNGR)

HSP 1 Score: 145 bits (366), Expect = 5.560e-36
Identity = 83/258 (32.17%), Postives = 107/258 (41.47%), Query Frame = 1 
Query:  139 LGMAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGGXXXXXXXXXXXXXXXXXXXXXXXXARPMSLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGAAVAAVQALGSSFGGXXXXXXXXXXQGEQCPQCGASFGDVGALVAHVEASH 912
            +G  EF ++G+HC  E+C Q DFLPF CD C+   FCL HRS++ H C  +  KD   ++CPLC K VR    +DPN  W+ H  T+C P NY+K    K++C  P CRE L  +N  +C  C  + CL HRF   H C G                            +S                                 RA           SS G           + E CPQCGA F  V AL+ HV+  H
Sbjct:    1 MGTPEFPDLGKHCMVEDCQQIDFLPFTCDRCNR-VFCLEHRSFIKHQCPKADKKDVTVVICPLCAKGVRLIPDEDPNITWESHVNTECDPSNYEKV-TKKRKCPVPGCREVLTFSNIIKCKDCTLDHCLKHRFGPDHKCPGPKKPETAFSFISALSRSRKDTPSKKPTQVSAGSSKWSASLLSAASSFRASTEAGVARLGNEFNRALQIAKEGMGPSSSDGNGAG-------EAEVCPQCGAKFAAVTALIEHVQKVH 249
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: UPI000B8C87A6 (zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C87A6)

HSP 1 Score: 145 bits (366), Expect = 5.560e-36
Identity = 92/279 (32.97%), Postives = 113/279 (40.50%), Query Frame = 1 
Query:  139 LGMAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGGXXXXXXXXXXXXXXXXXXXXXXXXARPMSLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGAAVAAVQALGSSFGGXXXXXXXXXXQG------------EQCPQCGASFGDVGALVAHVEASHSEERQGQGQ 939
            +G  EF ++G+HC+ E+C Q DFLPF CD C    +CL HRSY  H C  +   D   ++CPLC K VR    +DPN  W+ H  T+C P NY K    KK+C  P CRE L  +NT +C  C  + CL HRF   H C G                            MSL                                   +A A++  L S              QG            E CPQCGA F  V ALV HVE  H E    QG+
Sbjct:    1 MGTPEFPDLGKHCSVEDCKQIDFLPFICDRCRQ-VYCLEHRSYFKHNCPKADRGDVTVVICPLCAKGVRLNPDEDPNITWEAHVNTECDPSNYDKV-TKKKKCPVPGCREVLTFSNTIKCRDCTLDHCLKHRFGPDHKCPGPKKPDAGFAF------------------MSLLSRSRKEESKTYQAPATSSSKWTSTFLSAASTVRASAEASMAKLSSEISQKLQIARDGVVQGNNSNGNGGAVKMETCPQCGAKFLSVAALVDHVEKVH-ERNSKQGR 258
[Close]
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Match: M5VQL8_PRUPE (Uncharacterized protein n=5 Tax=Prunus TaxID=3754 RepID=M5VQL8_PRUPE)

HSP 1 Score: 142 bits (357), Expect = 1.010e-34
Identity = 87/270 (32.22%), Postives = 110/270 (40.74%), Query Frame = 1 
Query:  139 LGMAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSGNKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKRCAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGGXXXXXXXXXXXXXXXXXXXXXXXXARPMSLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRAGAAVAAVQALGSSFG----------GXXXXXXXXXXQGEQCPQCGASFGDVGALVAHVEASHSE 918
            +G  EF ++GRHC   +C Q DFLPF CD C    FCL HRSY+ H C  +  ++   ++CPLC K V     +D N  W+ H  T+C P NY+K    KK+C  P C+E L  +NT +C  C    CL HRF   H C G                           P +                                 RA +A A+V  L S             G          Q E+CPQCGA F  V ALV HVE  H +
Sbjct:    1 MGTPEFPDLGRHCYIADCQQIDFLPFTCDSCHQ-VFCLEHRSYIKHNCPKADKQNVTVVICPLCAKGVHLIPDEDANITWERHVNTECDPSNYEKA-TKKKKCPVPGCKELLTFSNTIKCRDCMVNHCLKHRFGPDHKCPGPKKPTTGFPFSGLLSRSRKEVSKPNHAPAASSSNWSNSFLTAASSF-----------------RA-SAEASVAKLSSELSQKWQIAKDGVGQSSNSGSRNGQLEECPQCGAKFSSVTALVDHVEKVHEK 250
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYN8_ECTSI2.330e-8956.77AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpu... [more]
A0A836C9G4_9STRA1.860e-4554.29AN1-type domain-containing protein n=1 Tax=Tribone... [more]
A0A485L9P1_9STRA1.420e-4252.27Aste57867_18181 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9YYI5_9STRA3.420e-4151.13Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
UPI001BF566471.550e-3833.98Uncharacterized protein n=5 Tax=Juglandaceae TaxID... [more]
D8U802_VOLCA2.440e-3851.52Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A1S3V1R0_VIGRR1.250e-3734.20zinc finger AN1 and C2H2 domain-containing stress-... [more]
A0A218W448_PUNGR5.560e-3632.17zinc finger AN1 and C2H2 domain-containing stress-... [more]
UPI000B8C87A65.560e-3632.97zinc finger AN1 and C2H2 domain-containing stress-... [more]
M5VQL8_PRUPE1.010e-3432.22Uncharacterized protein n=5 Tax=Prunus TaxID=3754 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:406748..413167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score289.7
Seed ortholog evalue1.7e-75
Seed eggNOG ortholog2880.D7FYN8
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010200,GO:0010243,GO:0033993,GO:0042221,GO:0042493,GO:0050896,GO:0097305,GO:1901698,GO:1901700
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG3183@1,KOG3183@2759
Ec32 ortholog descriptionAN1 and C2H2 zinc finger protein
Ec32 orthologEc-17_000160.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1596
Cds size972
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.3065352-UTR-C-linearis_contig92:406747..4068911622930795.3065352-UTR-C-linearis_contig92:406747..406891Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 406748..406891 +
1690881254.2916844-UTR-C-linearis_contig92:406747..4068911690881254.2916844-UTR-C-linearis_contig92:406747..406891Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 406748..406891 +
1622930795.4695585-UTR-C-linearis_contig92:412687..4131671622930795.4695585-UTR-C-linearis_contig92:412687..413167Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 412688..413167 +
1690881254.3879201-UTR-C-linearis_contig92:412687..4131671690881254.3879201-UTR-C-linearis_contig92:412687..413167Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 412688..413167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930795.33296-CDS-C-linearis_contig92:406891..4069821622930795.33296-CDS-C-linearis_contig92:406891..406982Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 406892..406982 +
1690881254.3060296-CDS-C-linearis_contig92:406891..4069821690881254.3060296-CDS-C-linearis_contig92:406891..406982Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 406892..406982 +
1622930795.352112-CDS-C-linearis_contig92:408302..4084411622930795.352112-CDS-C-linearis_contig92:408302..408441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 408303..408441 +
1690881254.3182197-CDS-C-linearis_contig92:408302..4084411690881254.3182197-CDS-C-linearis_contig92:408302..408441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 408303..408441 +
1622930795.3697755-CDS-C-linearis_contig92:409828..4098971622930795.3697755-CDS-C-linearis_contig92:409828..409897Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 409829..409897 +
1690881254.3299618-CDS-C-linearis_contig92:409828..4098971690881254.3299618-CDS-C-linearis_contig92:409828..409897Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 409829..409897 +
1622930795.3864603-CDS-C-linearis_contig92:410356..4104581622930795.3864603-CDS-C-linearis_contig92:410356..410458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 410357..410458 +
1690881254.3444395-CDS-C-linearis_contig92:410356..4104581690881254.3444395-CDS-C-linearis_contig92:410356..410458Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 410357..410458 +
1622930795.4028652-CDS-C-linearis_contig92:410944..4111161622930795.4028652-CDS-C-linearis_contig92:410944..411116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 410945..411116 +
1690881254.3561962-CDS-C-linearis_contig92:410944..4111161690881254.3561962-CDS-C-linearis_contig92:410944..411116Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 410945..411116 +
1622930795.4242048-CDS-C-linearis_contig92:411961..4121621622930795.4242048-CDS-C-linearis_contig92:411961..412162Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 411962..412162 +
1690881254.3651352-CDS-C-linearis_contig92:411961..4121621690881254.3651352-CDS-C-linearis_contig92:411961..412162Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 411962..412162 +
1622930795.4463744-CDS-C-linearis_contig92:412489..4126871622930795.4463744-CDS-C-linearis_contig92:412489..412687Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 412490..412687 +
1690881254.3758807-CDS-C-linearis_contig92:412489..4126871690881254.3758807-CDS-C-linearis_contig92:412489..412687Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 412490..412687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16880.1prot_C-linearis_contig92.16880.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 406892..412687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16880.1

>prot_C-linearis_contig92.16880.1 ID=prot_C-linearis_contig92.16880.1|Name=mRNA_C-linearis_contig92.16880.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=324bp
MAEFTEIGRHCAAENCNQQDFLPFKCDCCDAGTFCLSHRSYVAHGCTSSG
NKDFRALVCPLCKKTVRFAGSQDPNEQWDLHTRTDCYPGNYKKNKPSKKR
CAAPSCREFLGPTNTQRCARCGKETCLTHRFPDSHICSGGGSGSSWSSSA
ATAAARRMEAQAQQARPMSLREKAAQKKAAASSQQSANTARATADRRRRN
NPRAGAAVAAVQALGSSFGGGSGSGGGGGGQGEQCPQCGASFGDVGALVA
HVEASHSEERQGQGQGQFGAAGGGGGSNAGGGERCPICNSLFADVALLVS
HVETMHPDGSGSAGAGASNCSIS*
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mRNA from alignment at C-linearis_contig92:406748..413167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16880.1 ID=mRNA_C-linearis_contig92.16880.1|Name=mRNA_C-linearis_contig92.16880.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6420bp|location=Sequence derived from alignment at C-linearis_contig92:406748..413167+ (Chordaria linearis ClinC8C monoicous)
CAGCAGAGCACCGCGCAAGGGTTTTGACACGCTGAGTGGCCCTCTGGTCT
CCTCTGTCAACACCACCTATTGAGCAAGGGAACAAAAGGGCGAGAAGAAC
AACTCGCTTGCCGTCTTGACATCTTGACATCTTGGCATCTTGGCATGGCG
GAGTTCACCGAAATCGGCAGGCATTGCGCGGCGGAAAACTGCAACCAGCA
GGATTTTCTTCCTTTCAAGTGCGACTGCTGCGATGGTGAGAGTGACAGTG
AGACTGACAGCAAATGGACGGCGTTTTTATCTCAACAACTCTTTTTGGAT
TTCACAGCACGCAAGGAGGCCGTTACTGCTTCAACGTTTTTTACCTGATA
CAGTACTGCTGTGTTCCAGCGCTTTTTTTGTTGTTGTTGCCGGTGTTATG
TTTTTTTCTGCATGGTGCTACAATACTGCTCTGAAAGGTGCCGGCCACGA
CAGGCATCACGTTCGATACAATAGCACCTATTTTGCGTCTCATGATACTT
GTACACGGCACTTGAATACTGAAACTGAATACCGTCGTCGGTATCATGAT
CGTCCGGGGCTGCTTGTGTCTTGTGTTGTACCACTTGTGGTTAGGTGTTG
GAGGATTGAACATCTCCTGTATGTCGGCAGTGGTGTGGTGTGTGTGGCTG
GATGATAACAGCCTGGTGAGGCCAGCACGATCAGCAAGGGTAAGCTTGCT
GTTGTGTGCGTGTCGAAGATGGTTTTGCTGGTGACTCCTGGCCAGGCTTT
TACTTTTTTGGTGGTAGACGATGAGAGTGAGAGAGTGGGGGCGAGTGGCC
CTAACCCTAACCCCTGCTCTCCATCGCTCTCGAAAACAAAGAATATCACC
ATCACCATCACCATCATCATCACGATCACGATCACGATCACGAGACCCAG
AGATACCTGCGGCATTTGGACCCCCGATATGCGGTCAGGTTACGGCAATC
TACCCGAGATGCTGCTCTACGTTTTTGCGGCGTATCTGAACCGACACTTA
CGCCCAGCAGCCTGCTTTTACTGGTGCCTCCCTACTCGCTATGTTGAACG
TTAACTGGTCAGCGACAGCGAGTGAAGGGTTTATGGTGCTGCTGCTACTG
TGTTGCTTATGCACAGAGCAGCCTGTGACACGTCGCCAGTATTACTGACA
CTGCATCCGTGAGAAGGTTTCACGCCACTAGCCGTACTCGGAGTACTATA
ATAGCCGTATTTGGAGACTAGCCGTAAAGTGGAGTAAGTTACAAGGTGTT
GAGTCAGCGTTCTTCTCTCGGCCTCTGATGAAAGGCTGCCCCGCCTCTAC
CTAACAAACGCCTATTTTCTGCTGTGTGCACACAATTGTGGCGTGCTACA
GTACCCCGCTGTTTTCCAAGGGTTTCTGTGTCTGATCACGTGACGCTGGC
CACGCCGTCCTCGCGAGGATGGCGAGGATGACGCCAACGACAACGTTAGC
GTTGGTTGACACTAATTAACCCTCGTGGCTGCTCCTCTGAGACGCCTTAC
TTAACCTTGTTGCTTCGCGTTTAACCTTGTTCGCTTTCACTTTGTTTTCT
GGAAGCAGGAACGTTCTGTCTGTCTCACCGCAGCTATGTGGCTCACGGGT
GCACGTCCTCCGGGAACAAGGACTTCCGGGCCTTGGTTTGCCCCCTTTGC
AAGAAGACCGTGCGCTTCGCCGGTAGCCAGGACCCCAACGAGCAGTGAGT
CACCCGATCCGACCCATCCAATCAATTCATCCAATCCATCCAATCAATTC
AGTCAATTGACACGTAGGCGAGGAAGGTACGCCACCCTCCCCGCCCACTC
CCTTACCACGTGGGATTGGATTGGCGTATCGTCATTCTCGTTGCACTAGA
AAATAAAAAACTGACGTAGTCATATCATGCCATGCCGAGCAAGGTAGACG
TTGCAATACGTAGAATTGAAGAACGCTGCCAAACTAAACGGTAACCTACT
TGGTGTAGATATGATGGCCGCGTGCTTGCGGCAGGCAATCGATGATGATG
ATGATGATGATGATGATGATGATGGCAAGCAGCTTGTCCTGGCGTCTTTG
TGCTTGCATGCTTTCCTATCGATACCTCCCTGCATGTACGATACACGAGG
CCCCAGAACTTGCTGGGGGGGTCAATTTGGCCTATACGTGTCTGTGTGTG
TGTGTGTGTGTGTATGCGTGTGTTCGTTCGTTCGTGCCGATCTTTTCGCC
CCAAAAAACGCTATAGACCACCAATCGCGAAAGCGAAGAGTGCATAGGAA
AGCTTTTATGCACCACTCCTCGGTGCACCTGTCGATTTTCGATATTGTCT
ACAGTCGACAGCGTTGGCTCGGTGTTTGTGGTGTATTTAGCGTTGCCCTG
CCCGACTTTGGCACGTTCGGCGCTGCCAAATTCCAAACTACCGCAACAGA
GGCCAGTATTTAGGTCAATGGAGTCGCCTCCAGCAGTTAGTGTCGCGATC
GATGCCCGCGGCGCCGAGCTAGCGCGAGTCTTCGGTGTGTGCGTGTTCAG
AACTCCGCATAAATTCCGTGACTCGCTCAAACTCCGCTCCCAGGCAACAA
AAACATGTACAGCAGACGGTTCTAGGTGTGCATGCCATGTGTGTGTTGTG
TGGGCGGCCTACTTCGTGGGTCACCGTGATACACTGCACAGCCTCGCCGG
AGGAAGTCGTGGCGGCGGGGGTTCGGTGTTTTGCTCGGTGTTCCGCCCCT
CCCCCATCTCTCTTTACATATGCGGACCCTGTGTGCGCTCGGAGCGGTGG
ATGGATAGTGACGTGTTCTCTCTCCCTCTGCGGACCTGCGATTGGACCGT
TGGATTGTGTGTTGTTCTTGGTTGTTGTGTGTTGTGTTGTTGTGTTGTGT
TGTGTGTGGTTCAGCCTACTGTAGGTATTTTCTTCGGGGGAGGAGAAAAC
TAACATCCACAAGGACATTTTATCGCGCTCTGCTGATCCTTCGGATCCAT
TTTATTTTGATCACGTAGTAACTTTTTTAGAGGGTAAGTTACTTGTTAGC
CTCCGATTTTTGTTTGGATGTGTCGCCTCTATCGTGTATCGTTTGTCGCG
TTTTCTTGTGCTATGCCGTATCTAAAAAAAGGTGGGATTTGCACACACGG
ACAGACTGCTACCCTGGGAACTACAAGAAAAACAAGCCTTCCAAGAAGAG
GTAACCTAACTTTAGAGTACAAGAAAACTGAGCTTAGGACTACCTAAATG
AAGTCGATTTCGCCTGGATTGTGCCAGCGTTAGGGGTACTTGATAGGAGT
GTTGTAGTGATCACATCCAGGGGCGTATTGTGGCTGACTCTTGGAAAAAT
CGTTATTTTTTTTTCTTGGTGATGATTTCTTTTGGTACCGACAAACAGGT
ACGGTATGGCTGATTGTCCACAGCGTCCACTTTTTCTTTGACCGAGCCGG
TAAGACGTCTCAGCTATGTATGAGCTATGAGCTATGATCTATTGTAGTGT
TTTGGTGTTTTGGTGTTTTGGTGTTTTCTACGGTTGTCTATGTCTCGTCG
TGTCGTGTCGTGTCGTGTCCGGGCTGCTTCGATCTGTGCATCATAACTCG
ATTTGATGCACTTCGTTCTACGTTTGTTTGTTTTACCAATGATCCATGGA
TCAAATCAGGTGCGCAGCGCCGAGTTGTCGAGAATTTCTTGGACCAACCA
ACACACAGCGCTGCGCTCGATGTGGGAAAGAGACGTGCTTGACGCATAGA
TTCCCTGACAGGTGAGCAGGTGGCGTGGTGTTTAGTGCCCCCCCTGTTTT
CGGGTCGTTGGATCATTCGGTCGACACTACGGTGGGGCTAGGCACACGCC
AACGACGATTCCTTCGCTATTCTACACTATACTACACTGTTCTATAATAG
ACTGTGATGTGATACAGCATTGGTATTGTGAGAGGATCAAGAGGTAATGT
TATGGACTAGAAGAGGAGCGAGGCTTCTCGGGTAATTCATGCACAAATAC
TGGTACATGATTAAGGGATTTGGCCGTCGTACTCACGGCAAAGTACAGTA
CCAAGTCCTCTTTGAGGTTGATCCAAAACGCCTTCAAATGGAATCGGATC
ACGGTGGTGGCATGATATTCAAAGCGATACAGCGGGTATTCAGTATGGAA
GGTTTCACCGGCGACGTACCATTAGCAACTCGAAACTCAGAGCATTTTCT
CACCTACGTTGATGTCCGAACGGCATGTTGCTATGTTAATCTTACAGTCA
CATCTGCAGCGGCGGTGGAAGCGGCAGCAGCTGGTCCAGCTCTGCAGCCA
CCGCGGCCGCCAGGCGAATGGAGGCGCAGGCTCAGCAAGCGCGGCCGATG
TCGCTGAGGGAGAAGGCAGCCCAGAAGAAAGCTGCCGCTTCGAGCCAGCA
GAGCGCGAACACCGCGAGGGTGAGATGACGCCGTGCGGTGTGGTGCGTCG
TGGTGCGGTGTTGTATTGTCCTGTCTGCTTGTTGCTTTTATTTTGGTGTT
TTCGTGCCATCCTAGACCAGTTTGATTTAGGTGCAGTCGGTGAGACAAGA
TATAAAGATATGTACACAGGCAACTCAAACCTACATATCATACTTATGAT
ACCTTACAACAAGGCCATGATCTGGCGCACGTTGCACATCGCACATCGCA
CATCGCACATCGCACATTGCACATTGCACATTGCGCATTGTTAAGATCTG
CTGACTCAGGCGTACCATGATCTCCTCGGACGTGCGTGCATAAGTAGTGG
TAGGAGAAACCATTTTTTTGCCAACACTGAAGACATCTACCGCATCTTTT
ATCTTTTTGAGACTGTCAAGTAGAATAGCAGTAGACAACAGCGATGGGTC
GAAACGTCTTACGCGTAGAGGGGCAGTCTACAAGCCGCTCATTCCACCAC
GTTAAGAAATATGTTTTGGAGTACAGTGCAGACAGTAGTAGGATGTAGAT
ATCTGAGCAATGTGCTTGCTGCTCTGTTGGCATGAACAACACGATTGGAT
TGGATTGAACAGGAAGTCCACCGTCTGTCCACTGACCGTTTATTGTATTT
TGTCGTGTACACAGCATCAGCACGCCCACATTCTATTCCCCCCCTCCTTC
TCCTTCAGGACCAGCCTGCTCAATTCGACTGCTACCGTTCGTTTGCCTTT
TGGTGGCACGTACGTCGGAGAGGTTGGACCGGAGCGCTATCAACGTTTTA
CGTTCCTAGTTGTTACACGTCTCCCAATGCACATTTCTGAACGGCGTACC
TTGTGTCTTGTCAGGCCACCGCTGATCGGAGGCGACGGAATAACCCAAGA
GCAGGAGCAGCGGTAGCGGCGGTGCAAGCACTGGGTAGTAGCTTTGGAGG
TGGTAGTGGTAGCGGCGGGGGGGGGGGCGGGCAAGGAGAGCAGTGCCCGC
AGTGCGGAGCCTCGTTTGGCGATGTCGGGGCACTCGTAGCTCATGTCGAG
GCCTCTCATTCAGAGGTAATCGGTCTACCGTCAAATGGGATGTTCATTAT
TGTTTTTGAAGTCTATGACACGTAAGGATGTTTATTTTGCGACTATCATG
CTCTATATGTACTCCCAGCCTCGCCTCTACGCTTTCTAACTGTCGTGCCT
ACGCTGCTCTGCGCCAGTCAACTTGAAGCGCTACTCTATGCTGAACACAG
GAGTCATGCGCTCGCGAAAAGACCCGTAATCTTCATTAAGTATCTCTTCC
TGTGCGTTTCTCGTCAACAACGACACCCCCGCTCGCTTTGGCGCGGTTAC
TCTCTGTGTGCCTCCGCTCCTACTGTGTCTTTCCACCCGCAGGAGAGGCA
GGGACAGGGGCAGGGGCAGTTTGGAGCGGCCGGGGGTGGCGGCGGCAGCA
ACGCAGGAGGGGGAGAGCGGTGCCCCATCTGCAATAGCCTTTTCGCGGAT
GTAGCTCTTTTGGTGTCTCATGTGGAGACGATGCACCCCGATGGTAGTGG
TAGCGCTGGAGCGGGAGCCAGCAATTGCTCGATATCTTAGATGTCTTGAT
CTTGCTTGGTGCCTTGATGGTAACATTTGCCTTCAGCATCGATTTCAGGT
GAGCGCTGAATCGGCGTTGGTAGCAGCATGCCTCGTACCTAGTGGCTTTA
CAATGCGTTTTTCGTGTTTCTCTGTCGTCATCATGGTCGTATTGGATAAC
CTTACCTGAAGTGGCTCCACCGTAGCCAGCATGGTGCCCTCTCTTGATCT
GTGCAATAGCTCAGGGGGGGATGTCGTTTGTCTCTTGATAAAACGTGACT
TGCGATGCCGATCACAGAGGGCAGCTTACGAAACTTCGTCCGCCCTGCTT
CTGCTTTCTGGCTTGTCTGCACTTTGGTACGTCGGTATGCTCACCGGAAA
CGCGCACAAGTATGCACCTCAGCGGTGTTGTGCCCCACATGGAGGCAGCC
TTCTGAGGAGCAGACAAAGCATCGAAGAGATTATCAACTCTCAACTACGT
CTGGATTCCGTTGCAAGCGA
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Coding sequence (CDS) from alignment at C-linearis_contig92:406748..413167+

>mRNA_C-linearis_contig92.16880.1 ID=mRNA_C-linearis_contig92.16880.1|Name=mRNA_C-linearis_contig92.16880.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at C-linearis_contig92:406748..413167+ (Chordaria linearis ClinC8C monoicous)
ATGGCGGAGTTCACCGAAATCGGCAGGCATTGCGCGGCGGAAAACTGCAA
CCAGCAGGATTTTCTTCCTTTCAAGTGCGACTGCTGCGATGATGGCGGAG
TTCACCGAAATCGGCAGGCATTGCGCGGCGGAAAACTGCAACCAGCAGGA
TTTTCTTCCTTTCAAGTGCGACTGCTGCGATGCAGGAACGTTCTGTCTGT
CTCACCGCAGCTATGTGGCTCACGGGTGCACGTCCTCCGGGAACAAGGAC
TTCCGGGCCTTGGTTTGCCCCCTTTGCAAGAAGACCGTGCGCTTCGCCGG
TAGCCAGGACCCCAACGAGCACAGGAACGTTCTGTCTGTCTCACCGCAGC
TATGTGGCTCACGGGTGCACGTCCTCCGGGAACAAGGACTTCCGGGCCTT
GGTTTGCCCCCTTTGCAAGAAGACCGTGCGCTTCGCCGGTAGCCAGGACC
CCAACGAGCAGTGGGATTTGCACACACGGACAGACTGCTACCCTGGGAAC
TACAAGAAAAACAAGCCTTCCAAGAAGAGGTGGGATTTGCACACACGGAC
AGACTGCTACCCTGGGAACTACAAGAAAAACAAGCCTTCCAAGAAGAGGT
GCGCAGCGCCGAGTTGTCGAGAATTTCTTGGACCAACCAACACACAGCGC
TGCGCTCGATGTGGGAAAGAGACGTGCTTGACGCATAGATTCCCTGACAG
GTGCGCAGCGCCGAGTTGTCGAGAATTTCTTGGACCAACCAACACACAGC
GCTGCGCTCGATGTGGGAAAGAGACGTGCTTGACGCATAGATTCCCTGAC
AGTCACATCTGCAGCGGCGGTGGAAGCGGCAGCAGCTGGTCCAGCTCTGC
AGCCACCGCGGCCGCCAGGCGAATGGAGGCGCAGGCTCAGCAAGCGCGGC
CGATGTCGCTGAGGGAGAAGGCAGCCCAGAAGAAAGCTGCCGCTTCGAGC
CAGCAGAGCGCGAACACCGCGAGGTCACATCTGCAGCGGCGGTGGAAGCG
GCAGCAGCTGGTCCAGCTCTGCAGCCACCGCGGCCGCCAGGCGAATGGAG
GCGCAGGCTCAGCAAGCGCGGCCGATGTCGCTGAGGGAGAAGGCAGCCCA
GAAGAAAGCTGCCGCTTCGAGCCAGCAGAGCGCGAACACCGCGAGGGCCA
CCGCTGATCGGAGGCGACGGAATAACCCAAGAGCAGGAGCAGCGGTAGCG
GCGGTGCAAGCACTGGGTAGTAGCTTTGGAGGTGGTAGTGGTAGCGGCGG
GGGGGGGGGCGGGCAAGGAGAGCAGTGCCCGCAGTGCGGAGCCTCGTTTG
GCGATGTCGGGGCACTCGTAGCTCATGTCGAGGCCTCTCATTCAGAGGCC
ACCGCTGATCGGAGGCGACGGAATAACCCAAGAGCAGGAGCAGCGGTAGC
GGCGGTGCAAGCACTGGGTAGTAGCTTTGGAGGTGGTAGTGGTAGCGGCG
GGGGGGGGGGCGGGCAAGGAGAGCAGTGCCCGCAGTGCGGAGCCTCGTTT
GGCGATGTCGGGGCACTCGTAGCTCATGTCGAGGCCTCTCATTCAGAGGA
GAGGCAGGGACAGGGGCAGGGGCAGTTTGGAGCGGCCGGGGGTGGCGGCG
GCAGCAACGCAGGAGGGGGAGAGCGGTGCCCCATCTGCAATAGCCTTTTC
GCGGATGTAGCTCTTTTGGTGTCTCATGTGGAGACGATGCACCCCGATGG
TAGTGGTAGCGCTGGAGCGGGAGCCAGCAATTGCTCGATATCTTAGGAGA
GGCAGGGACAGGGGCAGGGGCAGTTTGGAGCGGCCGGGGGTGGCGGCGGC
AGCAACGCAGGAGGGGGAGAGCGGTGCCCCATCTGCAATAGCCTTTTCGC
GGATGTAGCTCTTTTGGTGTCTCATGTGGAGACGATGCACCCCGATGGTA
GTGGTAGCGCTGGAGCGGGAGCCAGCAATTGCTCGATATCTTAG
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