mRNA_C-linearis_contig92.16864.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16864.1
Unique NamemRNA_C-linearis_contig92.16864.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: D8LSW5_ECTSI (ABC transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW5_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 6.250e-35
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            LQRSQ+LVMDEATANIDQHTDSLIQDVVRTSFK KTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPH+LL
Sbjct:  236 LQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 306
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.980e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            LQRSQ+LVMDEATANIDQHTDSLIQDVVRTSFK KTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPH+LL
Sbjct: 1301 LQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 1371
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.980e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            LQRSQ+LVMDEATANIDQHTDSLIQDVVRTSFK KTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPH+LL
Sbjct: 1332 LQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 1402
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: A0A6H5JDN6_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.980e-33
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            LQRSQ+LVMDEATANIDQHTDSLIQDVVRTSFK KTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPH+LL
Sbjct: 1352 LQRSQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHVLL 1422
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: A0A6H5JDL0_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL0_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.450e-21
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQV 303
            LQR+Q+LVMDEATANIDQHTDSLIQDVVRTSFK KTVIMVAHRLNT+IDCDQV
Sbjct: 1251 LQRTQILVMDEATANIDQHTDSLIQDVVRTSFKGKTVIMVAHRLNTIIDCDQV 1303
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: N6UIT0_DENPD (ABC transporter domain-containing protein (Fragment) n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UIT0_DENPD)

HSP 1 Score: 92.8 bits (229), Expect = 3.020e-21
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            ++++++LVMDEATAN+DQHTDSLIQ  +R +FK  TVI +AHR+NT+IDCD+V+V+  G  VE G PH LL
Sbjct:   75 VRKNKILVMDEATANVDQHTDSLIQTTIRQAFKDCTVITIAHRINTIIDCDRVLVMDHGQAVEFGPPHELL 145
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: N6UP16_DENPD (ABC transporter domain-containing protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6UP16_DENPD)

HSP 1 Score: 91.7 bits (226), Expect = 4.090e-21
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            ++ +++L+MDEATAN+DQHTDSLIQ  +R +FK  TVI +AHR+NT+IDCD+V+V+  G  VE G PH LL
Sbjct:   45 VRNNKILIMDEATANVDQHTDSLIQTTIRQAFKDCTVITIAHRINTIIDCDRVLVMDHGQAVEFGPPHELL 115
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: A0A7S3Y5Z6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5Z6_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 7.310e-21
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            L R +VLV+DEATAN+D  TD LIQD VRT F+  TVIM+AHRL+TVIDCDQ++VL +G VVE G PH LL
Sbjct:  257 LARHRVLVLDEATANVDLETDGLIQDAVRTKFQGCTVIMIAHRLHTVIDCDQILVLGDGRVVEQGAPHTLL 327
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: N6TSN4_DENPD (ABC transporter domain-containing protein (Fragment) n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6TSN4_DENPD)

HSP 1 Score: 91.7 bits (226), Expect = 1.070e-20
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            ++ +++L+MDEATAN+DQHTDSLIQ  +R +FK  TVI +AHR+NT+IDCD+V+V+  G  VE G PH LL
Sbjct:   85 VRNNKILIMDEATANVDQHTDSLIQTTIRQAFKDCTVITIAHRINTIIDCDRVLVMDHGQAVEFGPPHELL 155
[Close]
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Match: A0A835YMC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMC7_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.290e-20
Identity = 50/71 (70.42%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  145 LQRSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQVVVLSEGSVVEAGHPHLLL 357
            LQRS++L+MDEATANID  TDSLIQ  VRT F   TVI VAHRL T+IDCD+V+VLS G V+E GHPH LL
Sbjct: 1682 LQRSKLLLMDEATANIDTGTDSLIQAAVRTQFSGCTVITVAHRLRTIIDCDRVLVLSHGQVLEEGHPHELL 1752
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSW5_ECTSI6.250e-3595.77ABC transporter domain-containing protein n=1 Tax=... [more]
D8LSW3_ECTSI1.980e-3395.77Multidrug resistance-associated protein-like prote... [more]
D8LSW4_ECTSI1.980e-3395.77Multidrug resistance-associated protein-like prote... [more]
A0A6H5JDN6_9PHAE1.980e-3395.77ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JDL0_9PHAE1.450e-2192.45ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
N6UIT0_DENPD3.020e-2160.56ABC transporter domain-containing protein (Fragmen... [more]
N6UP16_DENPD4.090e-2159.15ABC transporter domain-containing protein (Fragmen... [more]
A0A7S3Y5Z6_HETAK7.310e-2167.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
N6TSN4_DENPD1.070e-2059.15ABC transporter domain-containing protein (Fragmen... [more]
A0A835YMC7_9STRA1.290e-2070.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:179933..180949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue5.9e-29
Seed eggNOG ortholog2880.D8LSW3
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size359
Cds size357
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16864.1prot_C-linearis_contig92.16864.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 179933..180949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.486258-CDS-C-linearis_contig92:179932..1799891622930792.486258-CDS-C-linearis_contig92:179932..179989Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 179933..179989 -
1690881252.8179502-CDS-C-linearis_contig92:179932..1799891690881252.8179502-CDS-C-linearis_contig92:179932..179989Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 179933..179989 -
1622930792.5005713-CDS-C-linearis_contig92:180448..1806391622930792.5005713-CDS-C-linearis_contig92:180448..180639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 180449..180639 -
1690881252.8367777-CDS-C-linearis_contig92:180448..1806391690881252.8367777-CDS-C-linearis_contig92:180448..180639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 180449..180639 -
1622930792.5147312-CDS-C-linearis_contig92:180840..1809491622930792.5147312-CDS-C-linearis_contig92:180840..180949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 180841..180949 -
1690881252.8470676-CDS-C-linearis_contig92:180840..1809491690881252.8470676-CDS-C-linearis_contig92:180840..180949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 180841..180949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16864.1

>prot_C-linearis_contig92.16864.1 ID=prot_C-linearis_contig92.16864.1|Name=mRNA_C-linearis_contig92.16864.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=119bp
PQAIRCTHVGRRGSSADERQRTVTGCSRIGRGRQPITWTAAIALPCQGLQ
RSQVLVMDEATANIDQHTDSLIQDVVRTSFKCKTVIMVAHRLNTVIDCDQ
VVVLSEGSVVEAGHPHLLL
back to top

mRNA from alignment at C-linearis_contig92:179933..180949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16864.1 ID=mRNA_C-linearis_contig92.16864.1|Name=mRNA_C-linearis_contig92.16864.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1017bp|location=Sequence derived from alignment at C-linearis_contig92:179933..180949- (Chordaria linearis ClinC8C monoicous)
CCTCAGGCAATCAGGTGTACACATGTGGGACGCCGTGGAAGCAGTGCAGA
TGAAAGACAACGTACAGTCACTGGATGCTCCCGTATCGGAAGGGGGCGGC
AACCTATCAGTGAGCTATGCTCATGCACGAGTTATCTCAGCGCATCCTGA
GACCTTTTCTCGCGCACTCGCTTGCCCCCTGCTGGTGGCGGGCGCGATGG
GTGTTTGGGATGTCAAAATGGCTGCCGCGTTCTTTACGATCGAGCCCCTA
TCGAATTGACCGCCCTCTTTTCTTTTGCTGGCGTTCGTTGTCTTTTCTCC
GAATTGCAAGCTTGGACAGCGGCAATTGCTTTGCCTTGCCAGGGCCTCCA
GCGGTCTCAGGTCCTGGTCATGGACGAGGCTACCGCCAACATCGACCAGC
ATACCGACTCCCTGATTCAGGACGTGGTGCGGACGTCGTTCAAGTGCAAG
ACGGTCATCATGGTGGCTCACCGCCTCAACACCGTCATCGACTGCGACCA
GGTACGGTAAACCAAGGCAATGGTCATGGCGTTCGTTCTCGTCATTTTCG
TCCCTGATGCTGAATCAACGTGCGTACGAACATACCCTGAGGTGCCTGTA
GGCCGACGCAATCTCGACACTCCTCCTTCGTAGCCCCTCTAACCCCCTTC
CAACCCCATGCCGGTCATTCACCTCATGAACACCACCTTTGTTTGCAGGG
TGGGCATGCTTGCCCCGATAGCGAGAAATTGAAGTAAGCGCCGTGCTGAA
GTTTTGGAGTGTCGGTTCCTAAGGCCGATCGCCACTCATCCCAGTGAATC
GACACGCCCGCAGTTCACCTCTTTTCTCGCTTTCGGAGAACCCGGTGAAG
TGTTCAACCTAGAATATCCTGCCCCACAAGGAACACCCCATTGCTGTCGC
CGCCGTTACCACATTTTCGAATACACCCGAACGATTGAAAACGCCAACAA
CGTGCGATAGGTCGTGGTGCTCTCGGAGGGAAGCGTCGTCGAAGCAGGGC
ACCCTCACCTCCTTCTT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig92:179933..180949-

>mRNA_C-linearis_contig92.16864.1 ID=mRNA_C-linearis_contig92.16864.1|Name=mRNA_C-linearis_contig92.16864.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at C-linearis_contig92:179933..180949- (Chordaria linearis ClinC8C monoicous)
CCTCAGGCAATCAGGTGTACACATGTGGGACGCCGTGGAAGCAGTGCAGA
TGAAAGACAACGTACAGTCACTGGATGCTCCCGTATCGGAAGGGGGCGGC
AACCTATCACCTCAGGCAATCAGGTGTACACATGTGGGACGCCGTGGAAG
CAGTGCAGATGAAAGACAACGTACAGTCACTGGATGCTCCCGTATCGGAA
GGGGGCGGCAACCTATCACTTGGACAGCGGCAATTGCTTTGCCTTGCCAG
GGCCTCCAGCGGTCTCAGGTCCTGGTCATGGACGAGGCTACCGCCAACAT
CGACCAGCATACCGACTCCCTGATTCAGGACGTGGTGCGGACGTCGTTCA
AGTGCAAGACGGTCATCATGGTGGCTCACCGCCTCAACACCGTCATCGAC
TGCGACCAGCTTGGACAGCGGCAATTGCTTTGCCTTGCCAGGGCCTCCAG
CGGTCTCAGGTCCTGGTCATGGACGAGGCTACCGCCAACATCGACCAGCA
TACCGACTCCCTGATTCAGGACGTGGTGCGGACGTCGTTCAAGTGCAAGA
CGGTCATCATGGTGGCTCACCGCCTCAACACCGTCATCGACTGCGACCAG
GTCGTGGTGCTCTCGGAGGGAAGCGTCGTCGAAGCAGGGCACCCTCACCT
CCTTCTTGTCGTGGTGCTCTCGGAGGGAAGCGTCGTCGAAGCAGGGCACC
CTCACCTCCTTCTT
back to top