mRNA_C-linearis_contig92.16854.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16854.1
Unique NamemRNA_C-linearis_contig92.16854.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig92.16854.1 vs. uniprot
Match: D7G448_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G448_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.890e-9
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:   61 KVSPRLPSRTKGVMVVMYRRLNACRSLLLATLYDGEETLLGVGLFF 198
            K  P  P + KGVM V+YRRLNA RSLLLATLYDGE+T +GVGL F
Sbjct:   16 KSFPPAPLKNKGVMFVVYRRLNAGRSLLLATLYDGEDTSVGVGLVF 61
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G448_ECTSI2.890e-969.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:52096..52767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size672
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16854.1prot_C-linearis_contig92.16854.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 52144..52302 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.4283113-UTR-C-linearis_contig92:52095..521431622930791.4283113-UTR-C-linearis_contig92:52095..52143Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 52096..52143 +
1690881252.2864676-UTR-C-linearis_contig92:52095..521431690881252.2864676-UTR-C-linearis_contig92:52095..52143Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 52096..52143 +
1622930791.4739563-UTR-C-linearis_contig92:52302..527671622930791.4739563-UTR-C-linearis_contig92:52302..52767Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 52303..52767 +
1690881252.3177593-UTR-C-linearis_contig92:52302..527671690881252.3177593-UTR-C-linearis_contig92:52302..52767Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 52303..52767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.4584892-CDS-C-linearis_contig92:52143..523021622930791.4584892-CDS-C-linearis_contig92:52143..52302Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 52144..52302 +
1690881252.3005388-CDS-C-linearis_contig92:52143..523021690881252.3005388-CDS-C-linearis_contig92:52143..52302Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 52144..52302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16854.1

>prot_C-linearis_contig92.16854.1 ID=prot_C-linearis_contig92.16854.1|Name=mRNA_C-linearis_contig92.16854.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=53bp
MRREKVSPRLPSRTKGVMVVMYRRLNACRSLLLATLYDGEETLLGVGLFF
FV*
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mRNA from alignment at C-linearis_contig92:52096..52767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16854.1 ID=mRNA_C-linearis_contig92.16854.1|Name=mRNA_C-linearis_contig92.16854.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=672bp|location=Sequence derived from alignment at C-linearis_contig92:52096..52767+ (Chordaria linearis ClinC8C monoicous)
TTCCGCCGCAGGTATGGTCAAGCCGGGCTTCATCTCGCTAGCCAGTTCAT
GCGGAGGGAAAAGGTTTCCCCCCGGCTCCCCTCGAGAACAAAGGGCGTGA
TGGTTGTGATGTATCGGCGCCTAAACGCCTGTCGCTCTCTGTTGTTGGCC
ACTTTGTACGACGGGGAGGAAACTTTGTTGGGGGTGGGCTTGTTTTTTTT
TGTTTGAAGTACGGAGGATGACACACCCCTTGAAATATCCGTTTGCGCTG
TCGTACAAAATTGGATAGCGTTGTTCGAGATTAGCTGACACAGTTTTGAG
GTTTCGTTGACGTCCTCGTTTCGAATTGATAACGGTAAAAAAAGCTGGAG
TCGAACCCCGCCTTCGAGATACGCTCAACAACAACACACCATGGCTTAAT
GTCCGTGGAAAAACTCAAAACTAGGTTGGGGATGTCGAGTGTTAGGTCAC
TAGAGCTTCGACCCCGCACCTAGTCTAGACAGGCGTAACTGTGTAGGGAT
CTGTGGTTTGCATGTCTCGTTCATGGGCTCGGATCAATTGAACCAATTTA
GAATGAAATCCCAAACACGAGAAAGGCGGAGAGGATTAATCGTCACGAAA
CAAGGGCCATCATGGCTGTCACAGATTTGCTAGAACACAAGCTCGAGACG
TACGTACGGTATTTGTGCCGCG
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Coding sequence (CDS) from alignment at C-linearis_contig92:52096..52767+

>mRNA_C-linearis_contig92.16854.1 ID=mRNA_C-linearis_contig92.16854.1|Name=mRNA_C-linearis_contig92.16854.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at C-linearis_contig92:52096..52767+ (Chordaria linearis ClinC8C monoicous)
ATGCGGAGGGAAAAGGTTTCCCCCCGGCTCCCCTCGAGAACAAAGGGCGT
GATGGTTGTGATGTATCGGCGCCTAAACGCCTGTCGCTCTCTGTTGTTGG
CCACTTTGTACGACGGGGAGGAAACTTTGTTGGGGGTGGGCTTGTTTTTT
TTTGTTTGAATGCGGAGGGAAAAGGTTTCCCCCCGGCTCCCCTCGAGAAC
AAAGGGCGTGATGGTTGTGATGTATCGGCGCCTAAACGCCTGTCGCTCTC
TGTTGTTGGCCACTTTGTACGACGGGGAGGAAACTTTGTTGGGGGTGGGC
TTGTTTTTTTTTGTTTGA
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