mRNA_C-linearis_contig92.16852.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig92.16852.1
Unique NamemRNA_C-linearis_contig92.16852.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 9.100e-41
Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 1
Query:    1 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLESRPGGVYVTPLHVAATKGFCQGLVVLIDA 267
            QTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHH+V+H HLAVSK+LIEAGADLE+R GG   TPLHVAATKGFCQG+ +L+D+
Sbjct:   30 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKD-TPLHVAATKGFCQGMKLLMDS 117          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 2.940e-37
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 1
Query:    1 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLESRPGGVYVTPLHVAATKGFCQ 243
            QTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHHAV+HKHLAVSK+LIEAGADL++RPGG+  TPLHVAATKGFCQ
Sbjct:  420 QTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGID-TPLHVAATKGFCQ 499          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.160e-26
Identity = 56/63 (88.89%), Postives = 61/63 (96.83%), Query Frame = 1
Query:    4 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLESRPG 192
            TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHH+V+H+HLAVS  LIEAGADLE+RPG
Sbjct:   31 TPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.630e-26
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    1 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLESRPGGVYVTPLHVAATKGFCQGLVVLIDAGANVDS 285
            +TPLM A  +G  RVVR LLR GA VSVAD+DG TALH ++ +KHLAVSK L++AGA +E+R  GV  TPLHVAA KGF +G+V+LI AGANVDS
Sbjct:   40 RTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEAR--GVDGTPLHVAAAKGFHKGMVMLIHAGANVDS 132          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.060e-22
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   16 VASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLESRPG-----GVYVTPLHVAATKGFCQGLVVLIDAG 270
            VAS +G  RVVR LLR GA VS AD+DG TALH ++ +KHLAVSK L++AGADLE+R       GV  TPLHVAA KGF +G+V+LI AG
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG 126          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.870e-21
Identity = 54/102 (52.94%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    4 TPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLESRPGGVYV--------TPLHVAATKGFCQGLVVLIDAGANVDS 285
            T LM A+  G  R+VR LLR GA VSV+  DG+TALH A+  ++LAV+K LI+AGA++E++   V +        TPLH+AA +GFC+G+V LI+AGANVDS
Sbjct:   54 TALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDS 155          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.880e-20
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query:    1 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSK 150
            QTPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHHAV+HKHLAVSK
Sbjct:   36 QTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A7X3XUE7_9BACT (Uncharacterized protein n=3 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X3XUE7_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 8.120e-10
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    1 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLES--RPGGVYVTPLHVAATKGFCQGLVVLIDAGANVD 282
            + P+  A+  G    VR LLRQGA V+ A SDG TALH A  +  +A++K L+ AGA   +  R GG   TPLH+A+  G  +   ++++ GA+ D
Sbjct:   45 EAPVADAAERGDLEAVRALLRQGADVNTAQSDGMTALHWAASNNDIAIAKALLYAGATYRATTRIGGY--TPLHLASRGGHAEVARLILEDGADPD 138          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A0U5GCP2_ASPCI (BZIP domain-containing protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5GCP2_ASPCI)

HSP 1 Score: 59.3 bits (142), Expect = 2.990e-8
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIEAGADLESRPGGVYV------TPLHVAATKGFCQGLVVLIDAGANV 279
            ++P+  A+V G + VVR LL  GA V   D D  + LH A H++ + V + LIE  A+ E     +        TPLH+A  +GF +G+++LI +GA++
Sbjct:  210 RSPIFHAAVGGHNGVVRLLLSNGARVGHVDCDNRSVLHWAAHYQRIDVLQTLIEHWAEHERESYDIDAYDDHGWTPLHLAVERGFEEGVLLLIQSGADM 308          
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Match: A0A1V6RZL9_9EURO (BZIP domain-containing protein n=1 Tax=Penicillium vulpinum TaxID=29845 RepID=A0A1V6RZL9_9EURO)

HSP 1 Score: 56.2 bits (134), Expect = 3.770e-7
Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 QTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELI------EAGADLESRPGGVYVTPLHVAATKGFCQGLVVLIDAGANVDS 285
            +TPL+ A +     VVR LL  GA ++V D +G + LH AV ++ L + + L+      E   DL++     + TPLH++  + F  G+++L+ AGA+V++
Sbjct:  226 RTPLIYAIIENHDPVVRLLLSHGARIAVYDREGRSGLHWAVLYRRLGILQHLLDHRAKYERSLDLDAYDNAGW-TPLHMSIDRAFEAGVLMLLQAGADVNA 325          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig92.16852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH66_ECTSI9.100e-4183.15EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1W5_9PHAE2.940e-3788.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHQ8_9PHAE1.160e-2688.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL58_9PHAE3.630e-2665.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE9.060e-2262.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE3.870e-2152.94Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6H5L5L0_9PHAE1.880e-2096.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7X3XUE7_9BACT8.120e-1040.63Uncharacterized protein n=3 Tax=Gemmatimonadetes b... [more]
A0A0U5GCP2_ASPCI2.990e-836.36BZIP domain-containing protein n=1 Tax=Aspergillus... [more]
A0A1V6RZL9_9EURO3.770e-733.66BZIP domain-containing protein n=1 Tax=Penicillium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig92contigC-linearis_contig92:47655..47939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.9e-29
Seed eggNOG ortholog2880.D8LH66
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size285
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.2567732-CDS-C-linearis_contig92:47654..479271622930791.2567732-CDS-C-linearis_contig92:47654..47927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 47655..47927 -
1690881252.1975405-CDS-C-linearis_contig92:47654..479271690881252.1975405-CDS-C-linearis_contig92:47654..47927Chordaria linearis ClinC8C monoicousCDSC-linearis_contig92 47655..47927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930791.2751603-UTR-C-linearis_contig92:47927..479391622930791.2751603-UTR-C-linearis_contig92:47927..47939Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 47928..47939 -
1690881252.213939-UTR-C-linearis_contig92:47927..479391690881252.213939-UTR-C-linearis_contig92:47927..47939Chordaria linearis ClinC8C monoicousUTRC-linearis_contig92 47928..47939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig92.16852.1prot_C-linearis_contig92.16852.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig92 47655..47927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig92.16852.1

>prot_C-linearis_contig92.16852.1 ID=prot_C-linearis_contig92.16852.1|Name=mRNA_C-linearis_contig92.16852.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=91bp
MVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVHHKHLAVSKELIE
AGADLESRPGGVYVTPLHVAATKGFCQGLVVLIDAGANVDS
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mRNA from alignment at C-linearis_contig92:47655..47939-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig92.16852.1 ID=mRNA_C-linearis_contig92.16852.1|Name=mRNA_C-linearis_contig92.16852.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=285bp|location=Sequence derived from alignment at C-linearis_contig92:47655..47939- (Chordaria linearis ClinC8C monoicous)
CAGACACCGCTGATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAG AGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTGGCGGACAGCGACGGTT ATACTGCTCTGCACCACGCGGTTCATCACAAACACCTGGCCGTGAGCAAA GAGCTGATCGAGGCGGGAGCGGACCTTGAATCGAGGCCTGGTGGTGTGTA TGTTACACCGCTTCATGTAGCCGCGACGAAAGGGTTTTGCCAAGGACTGG TGGTGCTGATCGACGCAGGCGCGAATGTGGACAGC
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Coding sequence (CDS) from alignment at C-linearis_contig92:47655..47939-

>mRNA_C-linearis_contig92.16852.1 ID=mRNA_C-linearis_contig92.16852.1|Name=mRNA_C-linearis_contig92.16852.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at C-linearis_contig92:47655..47939- (Chordaria linearis ClinC8C monoicous)
ATGGTGGCCTCCGTCATTGGTTCCTCGCGCGTTGTCAGAGACCTTCTGCG
GCAGGGTGCCAGCGTCTCGGTGGCGGACAGCGACGGTTATACTGCTCTGC
ACCACGCGGTTCATCACAAACACCTGGCCGTGAGCAAAGAGCTGATCGAG
GCGGGAGCGGACCTTGAATCGAGGCCTGGTGGTGTGTATGTTACACCGCT
TCATGTAGCCGCGACGAAAGGGTTTTGCCAAGGACTGGTGGTGCTGATCG
ACGCAGGCGCGAATGTGGACAGCATGGTGGCCTCCGTCATTGGTTCCTCG
CGCGTTGTCAGAGACCTTCTGCGGCAGGGTGCCAGCGTCTCGGTGGCGGA
CAGCGACGGTTATACTGCTCTGCACCACGCGGTTCATCACAAACACCTGG
CCGTGAGCAAAGAGCTGATCGAGGCGGGAGCGGACCTTGAATCGAGGCCT
GGTGGTGTGTATGTTACACCGCTTCATGTAGCCGCGACGAAAGGGTTTTG
CCAAGGACTGGTGGTGCTGATCGACGCAGGCGCGAATGTGGACAGC
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