mRNA_C-linearis_contig91.16837.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig91.16837.1
Unique NamemRNA_C-linearis_contig91.16837.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 718 bits (1853), Expect = 1.060e-253
Identity = 427/578 (73.88%), Postives = 480/578 (83.04%), Query Frame = 1 
Query:  109 MFLSRRSWWIGAAFVFANFELGIANFEAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDGNMSDESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEVEIDIDDGIDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRLAMYKGDIRVRTVDISVDGSLVTTWTSSGTTTDFEGINLSGAYGQVVTITGNNQVDSSWLSIIETEIMVYDGVPPPPSPTTPSPVFSXXXXXXXLTITSSPNSDLPTGTNACFDSTSEDYRCSPPADEPTYLDLNNCNFVDADAADLPACFESFGKAGIEMLHLTFHSDLTTLPAGVFSGLDNVVDMDMSYTGLQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRYDGVEIQCLPATNATTISLWTQ-SVEEVRAGTCECEPEEAIYCEAGTSCQPGVGGYTC 1839
            M L RRSW   AA V A+      N+EAGT+ SV  +A V+D R+T+ YGC PDGCV ANTRDG+MSDESRWSCRPSLD SGSGC+IT+TL  V+YLGD+RIALYKGDTRTRT+++YVD   I TWTSSGTTTGFESV L  QGQV+EL G L+D EWLSILEVEID+DDGI DDD  V +DVVEA ++GTVTATADLYD RLGDTVGCDP+GCTAALTRDGD+SEGSRWSCAP+LGGPC+ISYDLG EYN+E+LRL MY+GD R RTVD+SVDG+LVTTWTSSGTTT+FE ++LSGAYGQVVTI+G+NQ DS WLSIIETEIMVY+G  P PSPTTP PV         + +T SP S    G N CFDST++DYRC P  D+P Y+DLNNCNFVD+DAADLPACFESFGK  IE LHLTFH DLTTLPAGVF GL+NVVDMDMSYTGL+YXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXX   SR+D V++QCLP++ AT ISLW Q  VEE +A TCECEP EA+YCE GT+CQPGVGGYTC
Sbjct:    1 MVLPRRSWATLAAAV-ASSRTVYGNYEAGTVMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQVVELVGDLNDDEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSCAPKLGGPCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVYEGDAPAPSPTTPPPVV--------MPMTPSPVSPT-AGINPCFDSTNDDYRCQPSVDQPAYIDLNNCNFVDSDAADLPACFESFGKTDIETLHLTFHDDLTTLPAGVFEGLENVVDMDMSYTGLEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPLLESXXXXXXXXXXXXXXXXXXXXXXXXXTLSSRFDDVQLQCLPSSTATEISLWGQLEVEEAKAATCECEPAEAVYCETGTTCQPGVGGYTC 568
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 625 bits (1612), Expect = 3.070e-217
Identity = 395/577 (68.46%), Postives = 452/577 (78.34%), Query Frame = 1 
Query:  124 RSWWIGAAFVFANF-ELGIANFEAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDGNMSDESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEVEIDIDDGIDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRLAMYKGDIRVRTVDISVDGSLVTTWTSSGTTTDFEGINLSGAYGQVVTITGNNQVDSSWLSIIETEIMVYDGVPPPPSPTTPSPVFSXXXXXXXLTITSSPNSDLPTGTNACFDSTSEDYRCSPPADEPTYLDLNNCNFVDADAADLPACFESFGKAGIEMLHLTFHSDLTTLPAGVFSGLDNVVDMDMSYTGLQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SRYDGVEIQCLPATNATTISLWTQSVEEVRAGTCECEPEEAIYCEAGTSCQPGVGGYTCG 1842
            RSW   AA V A    +  A  +AGT+T V  +APV+D R T+ YGC P GCVGANTRDG  SDESRWSC PSLD S SGC ITYTL D Q+L  ++IALY+GDTRTRT++I VD +   +WTSSGTT+ FES++LG  G+V+EL G L D EWLSILEVEI +DDG    D+  +VDVVEAG+LGTVTATADLYD RLGDTVGCDP+GCTAALTRDGD+SE SRWSCAPELGG C+ISYDLG EY+++EL+LAMY+GD RVRTV ++VDG LVTTWTSSGTT+ FE +++SGA GQVVTITG    DS WLSI+ETEIMVY+GV PPPSPTTP+              T SP     T  N CFDSTS+DYRC P  D+P  + LNNCNFVDAD AD+PAC E FGKA I+ +++ FH DLTTLP GVFSGLDN++DMD+SYTGLQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        SR+  V++QCLP++ ATTI LW Q  EE+  GTCECEP EAI CEAGTSCQPG  GYTCG
Sbjct:    5 RSWAAFAAAVAAGACVVDAAIVDAGTLTGVTTEAPVFDDRATLPYGCPPAGCVGANTRDGITSDESRWSCAPSLDSSDSGCTITYTLEDEQHLEALKIALYQGDTRTRTIDISVDGNYAFSWTSSGTTSDFESIDLGVDGKVVELVGDLQDWEWLSILEVEILVDDG----DDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPELGGLCSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVYNGVAPPPSPTTPA--------------TPSPTLPPTTDLNVCFDSTSDDYRCLPSEDDPNTVYLNNCNFVDADGADIPACLEIFGKADIQFVYMPFHDDLTTLPVGVFSGLDNILDMDISYTGLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELTLSTDVSRFPDVQLQCLPSSTATTIDLWFQPEEEILEGTCECEPAEAISCEAGTSCQPGTEGYTCG 563
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 1.450e-110
Identity = 196/322 (60.87%), Postives = 240/322 (74.53%), Query Frame = 1 
Query:  187 EAGTITSVAIDAPVYDARTTVTYG-CSPDGCVGANTRDGNMSD-ESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEVEIDIDDGIDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRLAMYKGDIRVRTVDISVDGSLVTTWTSSGTTTDFEGINLSGAYGQVVTITGNNQVDSSWLSIIETEIMVY-DGV--PPPPSPTTPSPVFS 1137
            EA T+ +V + AP+YD   T + G CSP GC+G NTRDG+ +  ESRWSC+P+L  +GS C ITY LG    L  + IA+YKGD RTRT+EI +D+     WTSSGTTT FE++E+ T G+ I++ GVL+DSEWLSI+EVEI +DDG+ D D+      VEAG LG VTAT+ L+D RLGD+ GCDP GCTA LTRDGD+S+GSRWSCAP LGG C+ISYDLG  Y+L ELRLA+YKG  RVRTVD++VDGSL TTWTSSGTT  FE ++LSG  GQ VT+TG    DS W+SI ET+IMV  D V  PP PS TTP+PVF+
Sbjct:   27 EASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDTMGRWIDIVGVLEDSEWLSIMEVEILVDDGVTDTDDVAGTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSCAPSLGGTCSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVTGVLD-DSEWVSITETDIMVLSDSVVSPPSPSTTTPAPVFA 347
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 1.710e-105
Identity = 196/340 (57.65%), Postives = 241/340 (70.88%), Query Frame = 1 
Query:  133 WIGAAFVFANFELGIANFEAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDGNMSD-ESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEVEIDIDDGIDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRLAMYKGDIRVRTVDISVDGSLVTTWTSSGTTTDFEGINLSGAYGQVVTITGNNQVDS-SWLSIIETEIMVY-DGV--PPPPSPTTPSPVFS 1137
            W G+  +    +  I   EA T+ +V   A +YD R +   GC P GCV   TRDG+ +  ESRWSC+P+L  +GS C ITY LG    L  + IA++KGD RTRT+EI +D+     WTSSGTT GFE++E+ T G+ IE+ GVL+DSEWLSI+EVEI +DDG+ D D+ VD   VEAG LG VTAT+ L+D RLGD+ GCDP GCTA LTRDGD+S+ SRWSCAP LGG C+ISYDLG  Y+L +LRLA+Y G  RVRTVD+SVDGSL TTWTSSGTT  FE I+LSG  GQ +T+TG   +D+  WLSI ETEIMV  DGV  PP  S  TP+PVF+
Sbjct:   10 WAGSTSLLRFADAAIV--EASTLATVTAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPALGDAGSVCRITYGLGIQYQLTGLNIAMFKGDERTRTLEINIDNLPYTVWTSSGTTAGFETIEVDTTGRWIEIVGVLEDSEWLSIMEVEILVDDGVTDTDDVVDTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDESRWSCAPSLGGTCSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVTG--VLDNLEWLSIKETEIMVLSDGVVFPPSASSPTPAPVFA 345
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 3.790e-98
Identity = 186/320 (58.13%), Postives = 221/320 (69.06%), Query Frame = 1 
Query:  178 ANFEAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDGNMSD-ESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEVEIDIDDG---IDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRLAMYKGDIRVRTVDISVDGSLVTTWTSSGTTTDFEGINLSGAYGQVVTITGNNQVDSSWLSIIETEIMVY-DGVPPPPSPTTP 1122
            A+ EA T+ +V   A +YD R +   GC P GCV   TRDG+ +  ESRW+C+P+L  +GS C ITY LG    L  + IA+YKGD RTRT+EI +D+    TWTSSGTTTGFE++EL T G+ I + GVL DSEWLSI+EV+I IDDG    DDD+ T +   VEA  LG+VTA A  YD RL    GCDP GC    TRDGDLS  SRWSCAP LGG CTISYDLGT Y+L+ELRLAM+KG  R  ++ + VD +LVTTWTSSGTT  FE I+LSG +GQV+ ITG    DS WLSIIE EIMV  DG  P   PTTP
Sbjct:    6 ASVEASTLANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMGRWISIVGVLADSEWLSIMEVKIMIDDGETGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDGGCDPSGCVVDNTRDGDLSTASRWSCAPTLGGECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEITGVLD-DSEWLSIIEAEIMVLEDGASP--MPTTP 322
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 9.150e-95
Identity = 176/313 (56.23%), Postives = 217/313 (69.33%), Query Frame = 1 
Query:  187 EAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDGNMSDESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVEL-GTQGQVIELRGVLDDSEWLSILEVEIDIDDGID---DDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRLAMYKGDIRVRTVDISVDGSLVTTWTSSGTTTDFEGINLSGAYGQVVTITGNNQVDSSWLSIIETEIMVY-DGVPPPPS 1110
            E G++ +V ++A  YD   TV  GC P GCV  NTRDG++S  SRWSC P+L   G  C I+Y LG V  L ++R+A+YKG  R  TME+ VDD ++ TWTSSGTT   E+++L GT GQ +E+ GVLDDSEWLSI+EVEI ++DG     DDD T +   VEA  LG+VT  A LYD  L    GCDP GC A  TRDGDLS  SRWSCAP+LGG C+ISYDLGT Y+L+E+RLAM+KG  R  T+++ VD +LV TWTSSGTT  FE I++SG  GQV+ ITG    DS WLSIIE EIM+  DG  P P+
Sbjct:  199 EVGSLGAVTVEASFYDPSLTVDGGCDPSGCVADNTRDGDLSTASRWSCAPTL---GGECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEITGVLDDSEWLSIVEVEIMVEDGDQGSGDDDTTTNTSAVEASTLGSVTVGASLYDPSLAVDGGCDPSGCVADNTRDGDLSAASRWSCAPKLGGECSISYDLGTAYDLDEVRLAMFKGTERQVTMEVRVDDALVITWTSSGTTDGFEAIDMSGTSGQVLEITGVLD-DSEWLSIIEAEIMLLEDGASPTPT 507
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.310e-60
Identity = 168/443 (37.92%), Postives = 208/443 (46.95%), Query Frame = 1 
Query:  112 FLSRRSWWIGAAFVFANFELGIANF----EAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDGNMSDESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEVEIDIDDGIDD-DDNTVDVD------------------------------------------------VVE--------------------------------------------AGQLGT----VTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGP---CTISYDLGTEYNLEELRLAMYKGDIRVRTVDISVDGSLVTTWTSSGTTTDFEGINL-SGAYGQVVTITGNNQVDSSWLSIIETEIMVY--DGVPPPPSPTT 1119
            F++  S  + A  VF+     IA      E+GT+T+V  +A ++D+R  V  GC P GC G  TR                                            GDTRTRTM++YVD  +  +WTSSGTT  FE+V LG  GQ +ELRGVL DSEWLSI EV+  ++DG  D DD+   +D                                                +V+                                            A ++GT    VT TADL+D  L    GCDP GCTAALTRDGD  + SRWSCA  LGG    C+ISYDLG E+ L+ELR+A+Y GDIRVRT+D+SVDG LV TWTSSGTT  FE I    G  G V+ + G    DS WLSIIETEIMV+  + V PPP+P T
Sbjct:    4 FVAAASALLAAGAVFSGPLSAIAAVIVVVESGTVTTVEAEASLFDSRLAVAGGCDPAGCSGDKTR--------------------------------------------GDTRTRTMDVYVDQALQTSWTSSGTTNEFETVVLGVTGQTVELRGVLADSEWLSITEVKALVEDGATDTDDSEFQIDFPSWATELPPLPNATWRLFLPRHNMSIMTSAHVRGSPTNTSSLPALPYIVQVKIMVLSGDGLAPPPSPPTTTPAPVFAPVATATPTVATPEQLWSAKEIGTQDTTVTTTADLFDPALAIDNGCDPAGCTAALTRDGDTGDASRWSCATNLGGEGAVCSISYDLGREFGLDELRVALYNGDIRVRTIDVSVDGVLVATWTSSGTTDGFESIAFPDGVSGTVINLQGVLD-DSEWLSIIETEIMVWPQNVVTPPPTPAT 401
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: D7G5L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L7_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 8.450e-37
Identity = 73/98 (74.49%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:  586 SILEVEIDIDDGIDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRL 879
            S+  VEI +DDG    D+  +VDVVEAG+LGTVTATADLYD RLGDTVGCDPDGCTAALTRDGD+SE SRWSCAPELGG C+ISYD G EY ++EL+L
Sbjct:   22 SVSMVEILVDDG----DDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPDGCTAALTRDGDMSEDSRWSCAPELGGLCSISYDRGAEYRIDELQL 115
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: D8LRJ1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRJ1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.570e-25
Identity = 65/99 (65.66%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:  472 MIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEVEIDIDDGIDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGCTAALTR 768
            MI+ WTSSG T  FE++ELG QG VI L GVL DS+WLSILEV I +DDG DD      V VVEAG+LG V ++A+ YDLRL DTVGCDP GC+AALTR
Sbjct:    1 MIMEWTSSGETAAFETIELGVQGTVIGLHGVLADSDWLSILEVGILVDDGNDDG-----VAVVEAGELGPVASSAEFYDLRLADTVGCDPAGCSAALTR 94
[Close]
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.530e-22
Identity = 67/156 (42.95%), Postives = 94/156 (60.26%), Query Frame = 1 
Query:  187 EAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDGNMSDESRWSCRPSLDPSGSG-----CAITYTLGDVQYLGDMRIALYKGDTRTRTMEIYVDDDMIITWTSSGTTTGFESVEL----GTQGQV---IELRGVLDDSEWLSILEVEIDIDD 618
            EAG +T+V +    +DART    GC+PDGC G NTRDG+++D SRWSC   L  +  G     C + + LG+ Q +  + +A  KGDTRTRT+ I V+ ++    TS GTT+G E+ EL    G  G +   +E  G+  D E+LSI+EVEI + D
Sbjct:  249 EAGEVTTVTVTTNAFDARTD-DDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTAD-EFLSIIEVEIAVGD 402
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5L1V3_9PHAE1.060e-25373.88F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FL48_ECTSI3.070e-21768.46Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5KL74_9PHAE1.450e-11060.87F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KFA6_9PHAE1.710e-10557.65F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KH45_9PHAE3.790e-9858.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTH1_ECTSI9.150e-9556.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FZZ4_ECTSI1.310e-6037.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5L7_ECTSI8.450e-3774.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRJ1_ECTSI5.570e-2565.66Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7G277_ECTSI5.530e-2242.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:562429..572669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score704.5
Seed ortholog evalue4.4e-200
Seed eggNOG ortholog2880.D7G2Y6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-09_004400.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons14
Model size1871
Cds size1869
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16837.1prot_C-linearis_contig91.16837.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig91 562429..572669 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930786.6660514-CDS-C-linearis_contig91:562428..5625321622930786.6660514-CDS-C-linearis_contig91:562428..562532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 562429..562532 -
1690881249.6956193-CDS-C-linearis_contig91:562428..5625321690881249.6956193-CDS-C-linearis_contig91:562428..562532Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 562429..562532 -
1622930786.6850076-CDS-C-linearis_contig91:562916..5629781622930786.6850076-CDS-C-linearis_contig91:562916..562978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 562917..562978 -
1690881249.7115798-CDS-C-linearis_contig91:562916..5629781690881249.7115798-CDS-C-linearis_contig91:562916..562978Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 562917..562978 -
1622930786.704174-CDS-C-linearis_contig91:563348..5633991622930786.704174-CDS-C-linearis_contig91:563348..563399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 563349..563399 -
1690881249.7254946-CDS-C-linearis_contig91:563348..5633991690881249.7254946-CDS-C-linearis_contig91:563348..563399Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 563349..563399 -
1622930786.7245104-CDS-C-linearis_contig91:563706..5638501622930786.7245104-CDS-C-linearis_contig91:563706..563850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 563707..563850 -
1690881249.7332475-CDS-C-linearis_contig91:563706..5638501690881249.7332475-CDS-C-linearis_contig91:563706..563850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 563707..563850 -
1622930786.7373555-CDS-C-linearis_contig91:564098..5642451622930786.7373555-CDS-C-linearis_contig91:564098..564245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 564099..564245 -
1690881249.7414718-CDS-C-linearis_contig91:564098..5642451690881249.7414718-CDS-C-linearis_contig91:564098..564245Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 564099..564245 -
1622930786.7553062-CDS-C-linearis_contig91:564414..5645041622930786.7553062-CDS-C-linearis_contig91:564414..564504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 564415..564504 -
1690881249.7526207-CDS-C-linearis_contig91:564414..5645041690881249.7526207-CDS-C-linearis_contig91:564414..564504Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 564415..564504 -
1622930786.772233-CDS-C-linearis_contig91:564896..5649691622930786.772233-CDS-C-linearis_contig91:564896..564969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 564897..564969 -
1690881249.761577-CDS-C-linearis_contig91:564896..5649691690881249.761577-CDS-C-linearis_contig91:564896..564969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 564897..564969 -
1622930786.7953708-CDS-C-linearis_contig91:565368..5654981622930786.7953708-CDS-C-linearis_contig91:565368..565498Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 565369..565498 -
1690881249.7706468-CDS-C-linearis_contig91:565368..5654981690881249.7706468-CDS-C-linearis_contig91:565368..565498Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 565369..565498 -
1622930786.8148477-CDS-C-linearis_contig91:565804..5659921622930786.8148477-CDS-C-linearis_contig91:565804..565992Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 565805..565992 -
1690881249.7799904-CDS-C-linearis_contig91:565804..5659921690881249.7799904-CDS-C-linearis_contig91:565804..565992Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 565805..565992 -
1622930786.8326912-CDS-C-linearis_contig91:566338..5664501622930786.8326912-CDS-C-linearis_contig91:566338..566450Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 566339..566450 -
1690881249.7894459-CDS-C-linearis_contig91:566338..5664501690881249.7894459-CDS-C-linearis_contig91:566338..566450Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 566339..566450 -
1622930786.8569598-CDS-C-linearis_contig91:566798..5669691622930786.8569598-CDS-C-linearis_contig91:566798..566969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 566799..566969 -
1690881249.8015964-CDS-C-linearis_contig91:566798..5669691690881249.8015964-CDS-C-linearis_contig91:566798..566969Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 566799..566969 -
1622930786.8724585-CDS-C-linearis_contig91:567274..5674561622930786.8724585-CDS-C-linearis_contig91:567274..567456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 567275..567456 -
1690881249.8099017-CDS-C-linearis_contig91:567274..5674561690881249.8099017-CDS-C-linearis_contig91:567274..567456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 567275..567456 -
1622930786.8866112-CDS-C-linearis_contig91:569855..5699761622930786.8866112-CDS-C-linearis_contig91:569855..569976Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 569856..569976 -
1690881249.8185089-CDS-C-linearis_contig91:569855..5699761690881249.8185089-CDS-C-linearis_contig91:569855..569976Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 569856..569976 -
1622930786.901426-CDS-C-linearis_contig91:572375..5726691622930786.901426-CDS-C-linearis_contig91:572375..572669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 572376..572669 -
1690881249.827918-CDS-C-linearis_contig91:572375..5726691690881249.827918-CDS-C-linearis_contig91:572375..572669Chordaria linearis ClinC8C monoicousCDSC-linearis_contig91 572376..572669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig91.16837.1

>prot_C-linearis_contig91.16837.1 ID=prot_C-linearis_contig91.16837.1|Name=mRNA_C-linearis_contig91.16837.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=623bp
ETPPHNTTERATHTTNREAVHHISLHRSCSLARKEAMFLSRRSWWIGAAF
VFANFELGIANFEAGTITSVAIDAPVYDARTTVTYGCSPDGCVGANTRDG
NMSDESRWSCRPSLDPSGSGCAITYTLGDVQYLGDMRIALYKGDTRTRTM
EIYVDDDMIITWTSSGTTTGFESVELGTQGQVIELRGVLDDSEWLSILEV
EIDIDDGIDDDDNTVDVDVVEAGQLGTVTATADLYDLRLGDTVGCDPDGC
TAALTRDGDLSEGSRWSCAPELGGPCTISYDLGTEYNLEELRLAMYKGDI
RVRTVDISVDGSLVTTWTSSGTTTDFEGINLSGAYGQVVTITGNNQVDSS
WLSIIETEIMVYDGVPPPPSPTTPSPVFSPTTPSPALTITSSPNSDLPTG
TNACFDSTSEDYRCSPPADEPTYLDLNNCNFVDADAADLPACFESFGKAG
IEMLHLTFHSDLTTLPAGVFSGLDNVVDMDMSYTGLQYLPAGVFSGLSGL
KELSMHWSSIEGLPEGLFADTPLLESLEVSSAKLSSLPAGVFDPLAMLES
LTLSSRYDGVEIQCLPATNATTISLWTQSVEEVRAGTCECEPEEAIYCEA
GTSCQPGVGGYTCGEHSTQPGR*
back to top

mRNA from alignment at C-linearis_contig91:562429..572669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig91.16837.1 ID=mRNA_C-linearis_contig91.16837.1|Name=mRNA_C-linearis_contig91.16837.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10241bp|location=Sequence derived from alignment at C-linearis_contig91:562429..572669- (Chordaria linearis ClinC8C monoicous)
GAAACCCCCCCACACAACACCACTGAACGCGCCACCCACACAACAAACAG
AGAAGCCGTACACCACATCTCACTGCATCGCTCCTGTTCTCTCGCCCGCA
AAGAAGCCATGTTTCTTTCGCGTCGTAGCTGGTGGATAGGAGCAGCATTC
GTGTTCGCGAATTTCGAACTTGGGATCGCGAATTTCGAGGCTGGGACAAT
TACCAGCGTGGCCATTGATGCCCCTGTCTACGACGCACGTACGACCGTGA
CCTACGGGTGCTCGCCAGATGGTTGCGTCGGTGCCAACACGAGAGTGAGT
GCGTGGAGTTAGCAGCAAGAGACATGTTTCCGTGCGGGCCTGTGTATGAC
ATTACATAGCAGTATTTATACTTCGTATACTTGTATTGGGCCATTCTTAT
CGAACGAACAACTTTTTTCACGGATGGTTCTTGGATGGTTCGTGAATTTT
TTCACGAATCCGTGGATGTTTTTCGCTCGATAATAATGTTGTTGTTGTTG
TTGTTGTTAACTTCACATAAAACCGGATGTCAGTTGTAAATGCCAAAATC
TAGCAAATGCTCCAGCCCGTGGTCACGAAAGTACTAGAGCCATCAGAAGA
TCTAAAGGAACGCACATCTAGCAGCGAAAAAAGGTACACAAGCCCGAAGA
GGTACATCTAATCCCTGCACACCTATGCGTGTCCACAACTGACCTACACG
TCCGCCCCACCGTTCGACTACAGCAGCATCACCCCCTCCCTGTTTCACTC
TCTACCAAAAAACGTTTTGCCGACTACAAACAACATATTCGCCTGATTGA
GAGCGAAGTATCGGATTGAGAGCGAGATTGTGCGATGCGATGTAGCTGGT
CTACTGCTGAGAGGTAGAGCTTGCTGTGCGGCTTGAAGTGAAGGCCTTGC
CCATAGCTACAAGCCGACACCCTGGTCATCCTGTGAGAGTCACGCGTTGT
GGAGCTACACCGCGGAGCAGAAGCTACAGCAGAGCCCACCGCGCCAGGCG
ACAGCGCCCTGAAACAGTTTCAGGCAGAAATAGCCAATCTGGGGAAATCT
AGCAACTTGTGTAGCTCCTGGCTGCAGCAGCCGATGGCGATGAGACGCAT
ATGCACACGACGCTGCTGAGGAGACCTTCAATTTGCGCCGCTTCTTGGAA
GAGCCCGTCCCCTACTTCCCGAGAAATGACGAGAGGCGTCCGGACCCGAA
TTTTCAATTTTTTTGGTTCTCGCTCTCAATCGGAAACTTCGCTCTCAATC
AGGCGAAAACTCTGTTTACAGTGATTTGCTGTCTGGAGTGCTGTCTGTAC
AAACACAATGGTAGGCACGTGGAACAAGAAGCTGGCGGAGCACGGCTGCC
GTCTGAAGTGCTGTCAGAATGTGTCCGCGGACATACAGTGAAAGAGAACA
AACAACCAAAGCCATCTTGCACTTGACAATCACCCACGAATCGATCCCGA
TCGTCTCGGTTGGGTGCAGCAGTGTAACACTGACACTGACTAAGAAATCG
TTCCACACTAAAGGGGTCTTCCACGATGCAGGTTTTACCCAAAAAAGGCA
CCTGGGGTATCACGCCATCTCTGACGCGTCTCTCTACAAAACCAGTGCAG
ACGTCACACACACACACATCCAGCACCGATACAAGTACAGGGGGAAGAAA
ACGCAAAAAATTGACGGTCACAAAATGTTTGTCCGTCGCCATGGGCCGAT
GTCTCCGGTGACGCTGAGCCGATGTCGCCGGTGACGCTGTAGTAGCATGA
CCACACTCGACCCGCTCCGTCCGTACATGCTCTCGTTGTCGTCCTTCCCA
GTCGGTTCCTCGCTTTCTCCCTCGTTGTACTCAAGGTTCTTGGTCTTGAA
ACAAAAATTCTCGCGCCAAAGGAGTCAACCACCCCCAATCAGCTCGTCAC
CACCAGCTCCCTCCTCCTTTGGTGGCGAAGCCTGGTAACTCAGACAATAC
AGCTCCCTCTAGCAAACCTAGGGCCGTGTACATAGTGTCCTTTCACCCCT
GATGGTGTCTGCCTCCGCGCACAAAAGTGAGATGGGCATTGCTGCCTACA
CCGACGGCCATAAAGGCCCGCGCACCTCTGGACTTTTGTGCCTGACCCAT
CAGTGCCGACCCAACTCTACCACTGCGCACGCCTCACGGCGGATGCGCGG
CAGCAAGAAGGTATCGGGCTCCTTGAGGGTGAGTCTAGCCTTGCTCGCTA
GAAAGACCCCCCCCCTCGCTGTAGGCCATGCCTAGGCCAAAGCCTTGCCA
AGGCAGCGAGGGGAAGAAGGAAGTTAATAATACTCGGAGTATAAGAACGG
CCCTTACCATCATATTTTAGCACACAGAGAGAGTTGAGTTTTATTAGTTG
AGAGCGGAGATTCATCAACAGAACAGGGGTAGGGTTAGACTCGCAAGGCA
GTGCGGAGCAGGGTGTAGACAGGCGTACCTGTGGCGCCGTGCCAACCAGC
GCGGACTGCGACGAACAACTTTAACTTTCTCCAGCAGACAATACTTGGGA
CTAAATATGCACCATGGATGCATCCCACTCTGTCTATTGTATTAGTCTAT
ATCCAGGATCTTCTGCAGCGCAATAGCTTTTTTTTCGGCAGGACAACAAG
CGAGTGGTGTGTGGTGTGTGTGCGGACGACAACGAACGCCCTGCGCTGAT
TCTCTCTGTTTTCGGTAATTTCGTAAATAAATCCGAATACCAGGACGGAA
ACATGAGCGACGAGTCCCGCTGGTCGTGCAGGCCTTCGCTCGACCCATCC
GGCTCCGGATGCGCAATCACGTACACGCTGGGAGACGTCCAGTACCTCGG
AGACATGAGGATTGGTAAGTCTAAGCATTCGTTTGTCGCGGCGAGGCCGA
CTTATTTTAAGGTCGTTTCGAACCCCTCTTTTCCTGCGAAGAAACGTGAA
TTGAACGTGAATTATTTCAGTCATCATGTCGGTATCCGCGATTCAGCAGG
GTACGTACCATATAGACTAGACTTATCCGCAAATGAGCCTTTGGGGGTAC
CTCCCGGATATATCCGCTGTGACCGGGGACGAAAACTTTCCATCCCTGGG
GTGGTATACAACGTATACTTTTGACGTTTTGCTCGTTTGGAAGCAGATCG
CTGTATTATGTATTATGCTGTATACTGCTGTATAATACTACTGTATGTAT
GCGGTGATGCGGTGATGCTCTGTGTGTTTGCTGTCACTGCTGCTGCTGTT
GCTGCTGCCTGTCTACCGTTTCTCATAGCAGAGATAAGAGATAGCCCCCC
GCCACACCCCCTCCGCAGGGCCCCCGGATATATGAAAATATCCGCGATTT
TTCACGTTAGTTACCTCCCGCTGAGCCTTGTATGTATCCCGATATATCCA
TCCTATACCCCGATACCGACACCCCTGATTTTTTTTCGGCAACCGGGGAA
AGGAATTCCGCCGCTTTCGCCGGCCACATCACCATCCGTAGGCCTTTATC
TTTTATGCGTGCATAGTTTTGTGCATACAGTAACTAACTGGGCTTTTCGT
GCATAATCAGCAAAAGCTTAAAGTTGGAGCGTGCGTAGTATACATTTATG
TTTATTCTGCATAACTTTGTGCATAATAACTAACAACAGGGTTTTTCGTG
CATAAAGGTGATATGCCCGCGTTAGATTGGGGGTATAGGGGTGGCTCCGA
CGACAGTTTGTTTGCCCCACACAGAGCATTTAGCCGCATTTATCCCCACC
ATTTGGCCTTTCTTTCAAAAGAAAGTCTTTTGACTTCACATCATCAGACA
CTACCAATTAAGGGCAGAGAGAGTGGGCCTTAGATTCGAGATTCATTCGA
GATTCGGTGTAAACATGTGTGTGTATGTATGTACATATTGTAAGATAATA
AACGATACACGATAAACGCAAACTCCTAAAGACACCAAAGGACGACCTAA
AACCGTGCATAAGTACGACGAGCGTAAAGCGAGAATTTGTGCATAACTAC
GTGCTTAAGTCACCATTTTGAGCTTATGCACGCGGCGAAAAATGAGCTTA
TAACTTAAAATTGTCAGAAAAAAAGCATAATAAAAGATAAAGAAGGCCTA
CGATCCGCTGCTGCAACTACACTCTTCATAAAGTCTCACAGCAGACTTAA
CTCACAGGCTGCACGCTGCTCCCGATAGTATACTAGTCCAGGCTGGCTGT
GTCGGGAAGAAAGTCTCGGCCTCTGGCATGCCCTATGAGAGATGTTGTGA
CGAAATTGATTGGTAGTCGTGTGAGCTTCGGTTGGGGCTGCTGTATGAGC
GTCTGTCGGGCATAATGAATCAATTCAACCACAACAGCGACACCACCGAC
TCGCGCCGTTTTTTTTTCGTCGGCGGTGGCCTTGCTATGAACCTGTGCGA
GACTTCGTCGACGACGAGGTTCGCATGCTTTTCTGCGGTAGTACGGCCTT
CACACCCCGCGTGCGTGACCAATCGCGGATTTTCGGGTCGCGGAAATCGA
GAGGACTCTGTTTTTTTCTCGCCCCTTCGATTTCCGCGACCCGAAAAGAA
AAGAGGACCCATTTATTTCCGCGATCGCGGGAAAAAATCTTGGATCGCGG
AAAAAAATGGTTCGATAATAATAACGACCCTAGCCTTGTTTCCCCCCCCC
CAACTTGTCCCGCAACGCACGAAACATATAAATTTATTTGATTGCGTGTG
TGTGTGGTGGGCACTCCTACCCTTCCTGTCAGAAGTATTTACCCCCACAA
CACGTCGTCTGTCTGGCGTATAGCATGTACCGGATTTTTTGGACGCCGCA
CAAGAAATAAAGCGAGGTGGCGTTGGAAAACCGAAGTGATCTGTATTAAG
TTGAAGGTTCGCACCACAATCATACTTCGAAGTATACTGATTATTATATA
AAAGCCCGTTGTACGATAATTCAGCGAGATATTATATTATCGTCGTTCGG
GGCTATTGTAATGTATCGCGGTCGATGTGTTAAAAACCAGTCCCTGCAAT
GTGTCTCGTACAAGTAAAGTAGAACCTGACAGCTGAAACACTCCCTAGTT
GGTGTCCTCATTCCGGGAGATGAAGAGAGGGCGGTGGCAGCAGGGCAAGA
GGCGTCGACAGTAAAAATTATATTTCTTTCAGCCTCAAGCGGTTGCAGTA
CGGCGTTGTGTACGGGCAATCATTCTTTGTCCGACGAAGACGGTATGGTG
CACTACTCGCCCAAACACACCGTATCCTTGTTGGTGCCCCTTCCCTGACA
TCTTGCCTCGCAGCGCTGTACAAGGGGGACACGAGGACGAGAACCATGGA
AATTTACGTCGACGACGACATGATCATTACCTGGACAAGCTCGGGCACGA
CCACCGGGTTCGAGAGCGTCGAGCTTGGTACCCAAGGGCAGGTCATCGAG
CTGCGCGGAGTCCTGGATGACTCGGAGTGGCTCAGTATCCTGGAGGTCCG
TGTCTTTTATAGTGTATTATGTTTTGCTTTGTTTTTTGTTTGCGCAGGAT
TTATTATGCGGCAGAGTTCCCTTGCGTGTCGGTTGCGATGTCCAGACGAT
TGAAGCACGATACGATGAAACCGTGTGTTTAATTACGATGAAACCGCGTG
TTTAATCTTCTTGTTCTTCAAAAATGTTGTCCGCCAGCGGTTCCTTCTTG
GCGACCGCTACGCTGCAATAAAGTACCGTCGAAACCCGCAACAAGGCCCA
AGCACGCACTCAATTCCGTTCCTTTGGCACGAAACGTCTTGTACTCGTAG
GTGGAGATAGACATCGACGACGGTATCGACGACGACGACAACACCGTGGA
CGTGGACGTGGTTGAGGCCGGGCAGCTGGGAACGGTGACGGCTACGGCCG
ACCTGTACGACCTTCGCCTTGGCGACACGGTCGGCTGCGACCCTGATGGA
TGCACGGCAGCACTAACAAGGGTACGTGAATGCCGTCTTTGGGAAATATT
TGGACAGGCAGCCGTTGGCTGCGTTCTTGGGGTAAAGGAGGTTGCAATCC
GGGTTCTGATGCGAAAGCCGTTCGAGTCGAGTATAGTGTCCATGTTTCGC
ATACATCTCGCCTCTGTGTGTGTTGGGTGAGTGAGCATTTCGCACCGATC
ACGGCCGCACTGTTGATGGGGATATATATGCATTATTTTTTGTCTACAGC
TTGCCAGAAGAATCTCGGCAGAACCTAACCAAACCGCTCGCTTCTTGCCG
CCATGGTCAACAACAGATTTTGCTCTGCCTTCTCTCTATCTCCTTGCCTC
TCATGAAAAACGGTTTCAGGACGGCGATTTGTCCGAGGGGTCCAGGTGGT
CCTGCGCTCCCGAGCTCGGTGGCCCTTGCACCATCTCCTACGATCTCGGG
ACTGAGTACAACCTCGAGGAGCTTCGCCTCGGTGAGCGCACGCATCCCGT
AGCACCACATTCCGCATGTAAAACACACCGCCCAGTCTATTTGCTCTCCT
TGTTGTATAAATATCTGCGGTTTTGCACTGATCCTGAAGTGGAAGTTCGG
CGCGGCCATGAAGAGCTTGTTTGTACTCCCTGCGCCAGTCGCGACGCACA
GATGCCGACCCTTCGCACGCCTTTGTAACATGGGTGTATACCCCAATCCG
CTTTCGGAGGGCTGTAGAAGTGCGTCTCCTTTAGTCTAGTAAATTAAATT
TAAGCGTGCCACCCGTCTTAGCCTGCAAAAATCACGAAGAGCCTTTTATT
TTCCTTTTCCCCCGCCCCTTTTTGCAGCCATGTACAAGGGCGACATCAGG
GTGCGCACCGTGGACATCTCCGTCGACGGATCGCTGGTCACTACCTGGAC
GAGCTCAGGAACCACCACAGATTTCGAGGGCATCAACCTGTCTGGAGCGT
ACGGTCAAGTGGTCACCATCACGGGCAACAACCAGGTTGACTCGTCCTGG
CTAAGCATCATCGAGGTTGGTCCACCATGGTTGGTGTCGTTGCTTGATTT
CCTCTCCACCAGACCCAAGGATCGGTTGCTAATTTTTTGAAACCACATGA
TTTGCTGTGCCCCGTGGTCGTGCGCTGTGTTCGGCATGTGGCGTCGGGAT
TTTGTGGCGCTTCATGTTCAGCGTTGGGAGTTTTGGTGTGTCATCCTAGT
TGGGTCTGTAAGTGTCACAGTTCTCCTGGCTGCGTATGTAACGAACGATT
GATGCTGTCATCCTAAACACCACGTGACGATGTTCGTGCACGGCAACTCC
CGCCCTCAACCCCCCTCCCAGACGGAGATCATGGTGTACGACGGCGTCCC
CCCGCCACCAAGCCCCACCACTCCCTCTCCCGTGTTCTCGCCGACCACGC
CTTCCCCGGCCTTGACCATCACCAGCTCTCCTAATTCTGACCTTCCCACC
GGTAAGCACCTCTGGCTAGTGAAACCGTAAGGCCCACTGAAACCGGAATC
GTTTATCCGCATACACCGAGTCGTTTATCCGCGTGCACCAACGCTGCACG
CTGTGGTCGCCTCTGTGTTGCAACTGGAATATCACCTTCTGAATCGTTTT
GGAATTCAGACCTCTCACGGCTATCAGACCCTTCTTGATCATTTGAAGCT
CCTGTGGTTTGTTTCTCATCACTATTTCCCCGTCGTTCGAAATATCTAGC
GCGATTGCTGCAGTAGTAGTATATACCGCGTCTTTTGATGTCTGTTTGCT
CGATTTTATGCTCTGGTGGAGAAAGGGGTAGATTTTGTGTACCGAAGACC
GCGGTCAGTTCCGGGACAAACTCTCCTCCATTTTCTTCCTATTTTGGCAG
GAACCAACGCTTGTTTCGACAGCACGAGCGAAGATTACCGGTGCAGCCCC
CCCGCCGACGAGCCCACCTATCTGTGAGTGTGACTGGCACGCCCAACGAA
GCTGCTCGCTCGTAATGGTTCAGCAAAATTGATGATGGGCCACGCCAACG
AGTTGCCGTTGTTAAGAAATTGCTGTATTTCGTCTTTTCCCTCGGTGGTG
CTGCCACAAGTTAATTTAGAAGCCAGGACAGCTCCAACGCAGGCCACCGA
GAATCAACCGCAACACGAAGTCAAAGGTTTTCGCACTTGTTGTCGTCTCT
CTCTGTATCTATATATCTCTCTCTCTATCTCTCTCTCTCTCTCTCTGTGT
CTCTGTCTCTGTCTCTCGCCCTTTCGCGTCCGATAACTACTTCACTAAAT
AAACCGTTTCTATTTAATACAAATTCTGCTTTCCCGCGCGCACCCAATGT
TACCTATCGCGCCAGGGATTTGAACAACTGCAACTTCGTGGACGCTGACG
CCGCCGACCTCCCTGCGTGCTTCGAGAGCTTCGGCAAGGCCGGCATCGAG
ATGCTGTGAGTGGTTGTCCAACGACCACAACCAAGCAACGGCGTAGTTTA
ACGTGCACGAGGTTGCCTGCGAGAGATCGAGTCTGCCCTCCTTGCTTGAT
CAGACTGTGCTCTTAAGAATGCACTATCATCGCGCTTGTCCTGCTGTTGT
TTTGTTTTGCCTGGAAACGTTTAGCCACCTGACTTTCCATAGCGACCTGA
CGACGCTACCGGCGGGGGTGTTCTCGGGACTGGACAACGTGGTTGACATG
GACATGTCCTACACGGGACTGCAGTACCTGCCCGCCGGGGTATTCTCTGG
CCTCTCGGGGCTGAAGGAGCTGTGAGTATACTATCATACGACCCAGGATT
ATATGTAGGCCAATCGTGTCAGGTACGCTTGGCTCAAGCACGGAACGCTG
GCCCGTTATCCCTTCTCGCTGACTCCATAATTTTCAGCAATGAAAACGGG
CGAGGATCGTGCCTCTGAGTTCGGATGTAGTTCTTTGAATACCACATGCC
TTCTGCTGACCCCTTATATTTCGATGCTCTGGGACAATCGTTTTCTTTTG
CGCTCTGGATGTCCTAAAGTTCAATGCACTGGAGCAGCATAGAGGGTCTG
CCCGAGGGTCTCTTCGCCGACACGCCACTCCTCGAAAGCCTCGAGGTGTC
CTCCGCGAAGCTGAGCTCTCTGCCGGCCGGGGTTTTCGACCCGCTCGCCA
TGCTGGAATCCCTGTAAGTATGGAATATTCCGGTGATGGGAAGAACGTCC
CGTCAAAGTTGAAAAGGCAACCATCCGTAGCATCAGGGGGACACTTCTGT
TCGACCGTAGTTCCCATTTTCATCTTCAACGTGTTGATAGCTTTTGACTC
CTCTGGTTGCCCATCATCAAAACTCGCACCCCCTTCCCGACGCCTTCCGC
TCCTCCGCTGTCTCGCAAACGTTTCCCGGTCTCCGTCTAAACGCCAACGT
CAACGCCAACGTCTGGGCATCAACAACCGAAACTACAACGCCTCCTTTGC
TCCTTCGGCTTCCCGCGCAGGACCCTGTCGTCCCGTTACGATGGCGTGGA
AATACAGTGCCTTCCGGCCACGTGCGTAACATACCTATTGAGTGTTCTCG
TGTATTTAGATCGTTTTGCGTCCCGAAAAACTTGGTTTGTATGCCTACAG
CGGTTGGTTGCTGGCAGGCGATAGAATATTATACGGTGTGCAACGATTTG
TCCTCCCACGGTGGAGTTGAAATACCGCACTTGTCATCATGGACAGAGTG
CTTTTGGAGAGGCACCACTCGACACCGTCGACCTCGCCCTAGATCAGGCT
AGACAAAAGTACGCCCGTCAGATTGCTCCGCGGTGCCTGTTAGCACGGGA
CCCGCTCCCCGCGTGTTCGGTTCTCTTCAGCCGTAATGTTGCCATTGACA
CGCGTCGATGTTTTGTCGACACAACTCTTCGCGCCTTCCAGGAATGCCAC
AACGATTAGCCTGTGGACCCAATCGGTGGAGGAAGTTCGTGCTGGAACCT
GCGGTGAGTCTAGGGCTTTTCGCCTGGTAGGGGAATCCACGTGAAGGGTA
AAATGGTGCGACTCCATCAGATGCGGGGCGCGCAGAGCGCAACCGGCTCG
TACTTAATTAAGCAGGCCAATGTTTGTTTTTCAGCATGTATGTGTGTGTC
GTACGCACGGGGGAAGGTCTGCAACATATTTAGTTGGCAAAGGCGTTGAA
GCGGGCAGCTGAAGGGTTTTCTGGACACGATGCTTGTAGCCGGGACAGAA
CGACAGGATTTCGGTCGAAGTTCTTGGGTGCGGTTCTCGTGCTATTTTTC
TTTTTCTGGATGCTGAGTTTATTTTTCAAAACACGTCATCTGATTTAAGT
TGTCGCCACGTGTTTTGCCTGCCCTCTTTCAACCCAGAATGCGAGCCTGA
GGAGGCTATCTACTGCGAGGCCGGCACGTCATGCCAGCCTGGAGTCGGAG
GCTACACCTGCGGTGAGCATAGCACTCAACCTGGGCGCTAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig91:562429..572669-

>mRNA_C-linearis_contig91.16837.1 ID=mRNA_C-linearis_contig91.16837.1|Name=mRNA_C-linearis_contig91.16837.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3738bp|location=Sequence derived from alignment at C-linearis_contig91:562429..572669- (Chordaria linearis ClinC8C monoicous)
GAAACCCCCCCACACAACACCACTGAACGCGCCACCCACACAACAAACAG
AGAAGCCGTACACCACATCTCACTGCATCGCTCCTGTTCTCTCGCCCGCA
AAGAAGCCATGTTTCTTTCGCGTCGTAGCTGGTGGATAGGAGCAGCATTC
GTGTTCGCGAATTTCGAACTTGGGATCGCGAATTTCGAGGCTGGGACAAT
TACCAGCGTGGCCATTGATGCCCCTGTCTACGACGCACGTACGACCGTGA
CCTACGGGTGCTCGCCAGATGGTTGCGTCGGTGCCAACACGAGAGAAACC
CCCCCACACAACACCACTGAACGCGCCACCCACACAACAAACAGAGAAGC
CGTACACCACATCTCACTGCATCGCTCCTGTTCTCTCGCCCGCAAAGAAG
CCATGTTTCTTTCGCGTCGTAGCTGGTGGATAGGAGCAGCATTCGTGTTC
GCGAATTTCGAACTTGGGATCGCGAATTTCGAGGCTGGGACAATTACCAG
CGTGGCCATTGATGCCCCTGTCTACGACGCACGTACGACCGTGACCTACG
GGTGCTCGCCAGATGGTTGCGTCGGTGCCAACACGAGAGACGGAAACATG
AGCGACGAGTCCCGCTGGTCGTGCAGGCCTTCGCTCGACCCATCCGGCTC
CGGATGCGCAATCACGTACACGCTGGGAGACGTCCAGTACCTCGGAGACA
TGAGGATTGGACGGAAACATGAGCGACGAGTCCCGCTGGTCGTGCAGGCC
TTCGCTCGACCCATCCGGCTCCGGATGCGCAATCACGTACACGCTGGGAG
ACGTCCAGTACCTCGGAGACATGAGGATTGCGCTGTACAAGGGGGACACG
AGGACGAGAACCATGGAAATTTACGTCGACGACGACATGATCATTACCTG
GACAAGCTCGGGCACGACCACCGGGTTCGAGAGCGTCGAGCTTGGTACCC
AAGGGCAGGTCATCGAGCTGCGCGGAGTCCTGGATGACTCGGAGTGGCTC
AGTATCCTGGAGCGCTGTACAAGGGGGACACGAGGACGAGAACCATGGAA
ATTTACGTCGACGACGACATGATCATTACCTGGACAAGCTCGGGCACGAC
CACCGGGTTCGAGAGCGTCGAGCTTGGTACCCAAGGGCAGGTCATCGAGC
TGCGCGGAGTCCTGGATGACTCGGAGTGGCTCAGTATCCTGGAGGTGGAG
ATAGACATCGACGACGGTATCGACGACGACGACAACACCGTGGACGTGGA
CGTGGTTGAGGCCGGGCAGCTGGGAACGGTGACGGCTACGGCCGACCTGT
ACGACCTTCGCCTTGGCGACACGGTCGGCTGCGACCCTGATGGATGCACG
GCAGCACTAACAAGGGTGGAGATAGACATCGACGACGGTATCGACGACGA
CGACAACACCGTGGACGTGGACGTGGTTGAGGCCGGGCAGCTGGGAACGG
TGACGGCTACGGCCGACCTGTACGACCTTCGCCTTGGCGACACGGTCGGC
TGCGACCCTGATGGATGCACGGCAGCACTAACAAGGGACGGCGATTTGTC
CGAGGGGTCCAGGTGGTCCTGCGCTCCCGAGCTCGGTGGCCCTTGCACCA
TCTCCTACGATCTCGGGACTGAGTACAACCTCGAGGAGCTTCGCCTCGGA
CGGCGATTTGTCCGAGGGGTCCAGGTGGTCCTGCGCTCCCGAGCTCGGTG
GCCCTTGCACCATCTCCTACGATCTCGGGACTGAGTACAACCTCGAGGAG
CTTCGCCTCGCCATGTACAAGGGCGACATCAGGGTGCGCACCGTGGACAT
CTCCGTCGACGGATCGCTGGTCACTACCTGGACGAGCTCAGGAACCACCA
CAGATTTCGAGGGCATCAACCTGTCTGGAGCGTACGGTCAAGTGGTCACC
ATCACGGGCAACAACCAGGTTGACTCGTCCTGGCTAAGCATCATCGAGCC
ATGTACAAGGGCGACATCAGGGTGCGCACCGTGGACATCTCCGTCGACGG
ATCGCTGGTCACTACCTGGACGAGCTCAGGAACCACCACAGATTTCGAGG
GCATCAACCTGTCTGGAGCGTACGGTCAAGTGGTCACCATCACGGGCAAC
AACCAGGTTGACTCGTCCTGGCTAAGCATCATCGAGACGGAGATCATGGT
GTACGACGGCGTCCCCCCGCCACCAAGCCCCACCACTCCCTCTCCCGTGT
TCTCGCCGACCACGCCTTCCCCGGCCTTGACCATCACCAGCTCTCCTAAT
TCTGACCTTCCCACCGACGGAGATCATGGTGTACGACGGCGTCCCCCCGC
CACCAAGCCCCACCACTCCCTCTCCCGTGTTCTCGCCGACCACGCCTTCC
CCGGCCTTGACCATCACCAGCTCTCCTAATTCTGACCTTCCCACCGGAAC
CAACGCTTGTTTCGACAGCACGAGCGAAGATTACCGGTGCAGCCCCCCCG
CCGACGAGCCCACCTATCTGAACCAACGCTTGTTTCGACAGCACGAGCGA
AGATTACCGGTGCAGCCCCCCCGCCGACGAGCCCACCTATCTGGATTTGA
ACAACTGCAACTTCGTGGACGCTGACGCCGCCGACCTCCCTGCGTGCTTC
GAGAGCTTCGGCAAGGCCGGCATCGAGATGCTGGATTTGAACAACTGCAA
CTTCGTGGACGCTGACGCCGCCGACCTCCCTGCGTGCTTCGAGAGCTTCG
GCAAGGCCGGCATCGAGATGCTCCACCTGACTTTCCATAGCGACCTGACG
ACGCTACCGGCGGGGGTGTTCTCGGGACTGGACAACGTGGTTGACATGGA
CATGTCCTACACGGGACTGCAGTACCTGCCCGCCGGGGTATTCTCTGGCC
TCTCGGGGCTGAAGGAGCTCCACCTGACTTTCCATAGCGACCTGACGACG
CTACCGGCGGGGGTGTTCTCGGGACTGGACAACGTGGTTGACATGGACAT
GTCCTACACGGGACTGCAGTACCTGCCCGCCGGGGTATTCTCTGGCCTCT
CGGGGCTGAAGGAGCTTTCAATGCACTGGAGCAGCATAGAGGGTCTGCCC
GAGGGTCTCTTCGCCGACACGCCACTCCTCGAAAGCCTCGAGGTGTCCTC
CGCGAAGCTGAGCTCTCTGCCGGCCGGGGTTTTCGACCCGCTCGCCATGC
TGGAATCCCTTTCAATGCACTGGAGCAGCATAGAGGGTCTGCCCGAGGGT
CTCTTCGCCGACACGCCACTCCTCGAAAGCCTCGAGGTGTCCTCCGCGAA
GCTGAGCTCTCTGCCGGCCGGGGTTTTCGACCCGCTCGCCATGCTGGAAT
CCCTGACCCTGTCGTCCCGTTACGATGGCGTGGAAATACAGTGCCTTCCG
GCCACGACCCTGTCGTCCCGTTACGATGGCGTGGAAATACAGTGCCTTCC
GGCCACGAATGCCACAACGATTAGCCTGTGGACCCAATCGGTGGAGGAAG
TTCGTGCTGGAACCTGCGGAATGCCACAACGATTAGCCTGTGGACCCAAT
CGGTGGAGGAAGTTCGTGCTGGAACCTGCGAATGCGAGCCTGAGGAGGCT
ATCTACTGCGAGGCCGGCACGTCATGCCAGCCTGGAGTCGGAGGCTACAC
CTGCGGTGAGCATAGCACTCAACCTGGGCGCTAGAATGCGAGCCTGAGGA
GGCTATCTACTGCGAGGCCGGCACGTCATGCCAGCCTGGAGTCGGAGGCT
ACACCTGCGGTGAGCATAGCACTCAACCTGGGCGCTAG
back to top